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Items: 1 to 50 of 65

1.

Response of Wheat to a Multiple Species Microbial Inoculant Compared to Fertilizer Application.

Assainar SK, Abbott LK, Mickan BS, Whiteley AS, Siddique KHM, Solaiman ZM.

Front Plant Sci. 2018 Nov 13;9:1601. doi: 10.3389/fpls.2018.01601. eCollection 2018.

2.

Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses.

Kumaresan D, Stephenson J, Doxey AC, Bandukwala H, Brooks E, Hillebrand-Voiculescu A, Whiteley AS, Murrell JC.

Microbiome. 2018 Jan 2;6(1):1. doi: 10.1186/s40168-017-0383-2.

3.

Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics.

Malik AA, Thomson BC, Whiteley AS, Bailey M, Griffiths RI.

MBio. 2017 Jul 5;8(4). pii: e00799-17. doi: 10.1128/mBio.00799-17.

4.

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration.

Kumaresan D, Cross AT, Moreira-Grez B, Kariman K, Nevill P, Stevens J, Allcock RJN, O'Donnell AG, Dixon KW, Whiteley AS.

Sci Rep. 2017 Apr 3;7(1):564. doi: 10.1038/s41598-017-00650-6.

5.

Novel Primer Sets for Next Generation Sequencing-Based Analyses of Water Quality.

Lee E, Khurana MS, Whiteley AS, Monis PT, Bath A, Gordon C, Ryan UM, Paparini A.

PLoS One. 2017 Jan 24;12(1):e0170008. doi: 10.1371/journal.pone.0170008. eCollection 2017.

6.

Draft Genome Sequence of the Methane-Oxidizing Bacterium "Candidatus Methylomonas sp. LWB" Isolated from Movile Cave.

Stephenson J, Kumaresan D, Hillebrand-Voiculescu AM, Brooks E, Whiteley AS, Murrell JC.

Genome Announc. 2017 Jan 19;5(3). pii: e01491-16. doi: 10.1128/genomeA.01491-16.

7.

Soil Carbon-Fixation Rates and Associated Bacterial Diversity and Abundance in Three Natural Ecosystems.

Lynn TM, Ge T, Yuan H, Wei X, Wu X, Xiao K, Kumaresan D, Yu SS, Wu J, Whiteley AS.

Microb Ecol. 2017 Apr;73(3):645-657. doi: 10.1007/s00248-016-0890-x. Epub 2016 Nov 12.

PMID:
27838764
8.

Microbial phylogenetic and functional responses within acidified wastewater communities exhibiting enhanced phosphate uptake.

Weerasekara AW, Jenkins S, Abbott LK, Waite I, McGrath JW, Larma I, Eroglu E, O'Donnell A, Whiteley AS.

Bioresour Technol. 2016 Nov;220:55-61. doi: 10.1016/j.biortech.2016.08.037. Epub 2016 Aug 12.

PMID:
27566512
9.

Effect of simulated tillage on microbial autotrophic CO2 fixation in paddy and upland soils.

Ge T, Wu X, Liu Q, Zhu Z, Yuan H, Wang W, Whiteley AS, Wu J.

Sci Rep. 2016 Jan 22;6:19784. doi: 10.1038/srep19784.

10.

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil.

Wu X, Ge T, Wang W, Yuan H, Wegner CE, Zhu Z, Whiteley AS, Wu J.

Front Microbiol. 2015 May 8;6:379. doi: 10.3389/fmicb.2015.00379. eCollection 2015.

11.

Abundance and Diversity of CO2-Assimilating Bacteria and Algae Within Red Agricultural Soils Are Modulated by Changing Management Practice.

Yuan H, Ge T, Chen X, Liu S, Zhu Z, Wu X, Wei W, Whiteley AS, Wu J.

Microb Ecol. 2015 Nov;70(4):971-80. doi: 10.1007/s00248-015-0621-8. Epub 2015 May 10.

PMID:
25956939
12.

Marine bacterial communities are resistant to elevated carbon dioxide levels.

Oliver AE, Newbold LK, Whiteley AS, van der Gast CJ.

Environ Microbiol Rep. 2014 Dec;6(6):574-82.

PMID:
25756110
13.

Chemical fixation methods for Raman spectroscopy-based analysis of bacteria.

Read DS, Whiteley AS.

J Microbiol Methods. 2015 Feb;109:79-83. doi: 10.1016/j.mimet.2014.12.008. Epub 2014 Dec 19.

PMID:
25533216
14.

Weekly flow cytometric analysis of riverine phytoplankton to determine seasonal bloom dynamics.

Read DS, Bowes MJ, Newbold LK, Whiteley AS.

Environ Sci Process Impacts. 2014 Mar;16(3):594-603. doi: 10.1039/c3em00657c. Epub 2014 Feb 10.

PMID:
24510006
15.

Plant soil interactions alter carbon cycling in an upland grassland soil.

Thomson BC, Ostle NJ, McNamara NP, Oakley S, Whiteley AS, Bailey MJ, Griffiths RI.

Front Microbiol. 2013 Sep 10;4:253. doi: 10.3389/fmicb.2013.00253. eCollection 2013.

16.

Land coverage influences the bacterial community composition in the critical zone of a sub-Arctic basaltic environment.

Summers S, Whiteley AS, Kelly LC, Cockell CS.

FEMS Microbiol Ecol. 2013 Dec;86(3):381-93. doi: 10.1111/1574-6941.12167. Epub 2013 Jul 24.

17.

Evidence for phenotypic plasticity among multihost Campylobacter jejuni and C. coli lineages, obtained using ribosomal multilocus sequence typing and Raman spectroscopy.

Read DS, Woodcock DJ, Strachan NJ, Forbes KJ, Colles FM, Maiden MC, Clifton-Hadley F, Ridley A, Vidal A, Rodgers J, Whiteley AS, Sheppard SK.

Appl Environ Microbiol. 2013 Feb;79(3):965-73. doi: 10.1128/AEM.02521-12. Epub 2012 Nov 30.

18.

Non-destructive sampling of rock-dwelling microbial communities using sterile adhesive tape.

Cutler NA, Oliver AE, Viles HA, Whiteley AS.

J Microbiol Methods. 2012 Dec;91(3):391-8. doi: 10.1016/j.mimet.2012.09.022. Epub 2012 Sep 26.

PMID:
23022426
19.

Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform.

Whiteley AS, Jenkins S, Waite I, Kresoje N, Payne H, Mullan B, Allcock R, O'Donnell A.

J Microbiol Methods. 2012 Oct;91(1):80-8. doi: 10.1016/j.mimet.2012.07.008. Epub 2012 Jul 29.

PMID:
22849830
20.

The response of marine picoplankton to ocean acidification.

Newbold LK, Oliver AE, Booth T, Tiwari B, Desantis T, Maguire M, Andersen G, van der Gast CJ, Whiteley AS.

Environ Microbiol. 2012 Sep;14(9):2293-307. doi: 10.1111/j.1462-2920.2012.02762.x. Epub 2012 May 16.

PMID:
22591022
21.

The bacterial biogeography of British soils.

Griffiths RI, Thomson BC, James P, Bell T, Bailey M, Whiteley AS.

Environ Microbiol. 2011 Jun;13(6):1642-54. doi: 10.1111/j.1462-2920.2011.02480.x. Epub 2011 Apr 20.

PMID:
21507180
22.

Effects of sieving, drying and rewetting upon soil bacterial community structure and respiration rates.

Thomson BC, Ostle NJ, McNamara NP, Whiteley AS, Griffiths RI.

J Microbiol Methods. 2010 Oct;83(1):69-73. doi: 10.1016/j.mimet.2010.07.021. Epub 2010 Aug 4.

PMID:
20691223
23.

Fourier transform infrared spectroscopy as a metabolite fingerprinting tool for monitoring the phenotypic changes in complex bacterial communities capable of degrading phenol.

Wharfe ES, Jarvis RM, Winder CL, Whiteley AS, Goodacre R.

Environ Microbiol. 2010 Dec;12(12):3253-63. doi: 10.1111/j.1462-2920.2010.02300.x.

PMID:
20649644
24.

Metaproteomic and metagenomic analyses of defined oceanic microbial populations using microwave cell fixation and flow cytometric sorting.

Mary I, Oliver A, Skipp P, Holland R, Topping J, Tarran G, Scanlan DJ, O'Connor CD, Whiteley AS, Burkill PH, Zubkov MV.

FEMS Microbiol Ecol. 2010 Oct;74(1):10-8. doi: 10.1111/j.1574-6941.2010.00927.x. Epub 2010 Jul 5.

25.

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.

Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HT, Bodelier PL, Whiteley AS, van Veen JA, Kowalchuk GA.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10938-42. doi: 10.1073/pnas.0912421107. Epub 2010 Jun 1.

26.

Field scale molecular analysis for the monitoring of bacterial community structures during on-site diesel bioremediation.

Ciric L, Griffiths RI, Philp JC, Whiteley AS.

Bioresour Technol. 2010 Jul;101(14):5235-41. doi: 10.1016/j.biortech.2010.02.065. Epub 2010 Mar 19.

PMID:
20303748
27.

Protists have divergent effects on bacterial diversity along a productivity gradient.

Bell T, Bonsall MB, Buckling A, Whiteley AS, Goodall T, Griffiths RI.

Biol Lett. 2010 Oct 23;6(5):639-42. doi: 10.1098/rsbl.2010.0027. Epub 2010 Mar 10.

28.

Hydrocarbon utilization within a diesel-degrading bacterial consortium.

Ciric L, Philp JC, Whiteley AS.

FEMS Microbiol Lett. 2010 Feb;303(2):116-22. doi: 10.1111/j.1574-6968.2009.01871.x. Epub 2009 Dec 3.

29.

Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm.

Cunliffe M, Whiteley AS, Newbold L, Oliver A, Schäfer H, Murrell JC.

Appl Environ Microbiol. 2009 Nov;75(22):7173-81. doi: 10.1128/AEM.01374-09. Epub 2009 Sep 25.

30.

Dissolved organic carbon and bacterial populations in the gelatinous surface microlayer of a Norwegian fjord mesocosm.

Cunliffe M, Salter M, Mann PJ, Whiteley AS, Upstill-Goddard RC, Murrell JC.

FEMS Microbiol Lett. 2009 Oct;299(2):248-54. doi: 10.1111/j.1574-6968.2009.01751.x. Epub 2009 Aug 6.

31.

Vegetation affects the relative abundances of dominant soil bacterial taxa and soil respiration rates in an upland grassland soil.

Thomson BC, Ostle N, McNamara N, Bailey MJ, Whiteley AS, Griffiths RI.

Microb Ecol. 2010 Feb;59(2):335-43. doi: 10.1007/s00248-009-9575-z. Epub 2009 Aug 25.

PMID:
19705192
32.

Raman tweezers sorting of single microbial cells.

Huang WE, Ward AD, Whiteley AS.

Environ Microbiol Rep. 2009 Feb;1(1):44-9. doi: 10.1111/j.1758-2229.2008.00002.x.

PMID:
23765719
33.

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

Huang WE, Ferguson A, Singer AC, Lawson K, Thompson IP, Kalin RM, Larkin MJ, Bailey MJ, Whiteley AS.

Appl Environ Microbiol. 2009 Jan;75(1):234-41. doi: 10.1128/AEM.01861-08. Epub 2008 Nov 7.

34.

Characterizing the regulation of the Pu promoter in Acinetobacter baylyi ADP1.

Huang WE, Singer AC, Spiers AJ, Preston GM, Whiteley AS.

Environ Microbiol. 2008 Jul;10(7):1668-80. doi: 10.1111/j.1462-2920.2008.01583.x. Epub 2008 Mar 19.

PMID:
18363715
35.

Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

Huang WE, Stoecker K, Griffiths R, Newbold L, Daims H, Whiteley AS, Wagner M.

Environ Microbiol. 2007 Aug;9(8):1878-89.

PMID:
17635536
36.

Microbial analysis of soil and groundwater from a gasworks site and comparison with a sequenced biological reactive barrier remediation process.

Ferguson AS, Huang WE, Lawson KA, Doherty R, Gibert O, Dickson KW, Whiteley AS, Kulakov LA, Thompson IP, Kalin RM, Larkin MJ.

J Appl Microbiol. 2007 May;102(5):1227-38. Review.

37.

RNA stable-isotope probing.

Whiteley AS, Thomson B, Lueders T, Manefield M.

Nat Protoc. 2007;2(4):838-44.

PMID:
17446884
38.

Acylated homoserine lactones in the environment: chameleons of bioactivity.

Manefield M, Whiteley AS.

Philos Trans R Soc Lond B Biol Sci. 2007 Jul 29;362(1483):1235-40. Review.

39.

Single-cell Raman spectral profiles of Pseudomonas fluorescens SBW25 reflects in vitro and in planta metabolic history.

Huang WE, Bailey MJ, Thompson IP, Whiteley AS, Spiers AJ.

Microb Ecol. 2007 Apr;53(3):414-25. Epub 2007 Mar 2.

PMID:
17334857
40.

Genomic structure of the luciferase gene from the bioluminescent beetle, Nyctophila cf. caucasica.

Day JC, Chaichi MJ, Najafil I, Whiteley AS.

J Insect Sci. 2006;6:1-8. doi: 10.1673/031.006.3701.

41.

Quantitative in situ assay of salicylic acid in tobacco leaves using a genetically modified biosensor strain of Acinetobacter sp. ADP1.

Huang WE, Huang L, Preston GM, Naylor M, Carr JP, Li Y, Singer AC, Whiteley AS, Wang H.

Plant J. 2006 Jun;46(6):1073-83.

42.

Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies.

Whiteley AS, Manefield M, Lueders T.

Curr Opin Biotechnol. 2006 Feb;17(1):67-71. Epub 2005 Dec 7. Review.

PMID:
16337784
43.

Chromosomally located gene fusions constructed in Acinetobacter sp. ADP1 for the detection of salicylate.

Huang WE, Wang H, Zheng H, Huang L, Singer AC, Thompson I, Whiteley AS.

Environ Microbiol. 2005 Sep;7(9):1339-48.

PMID:
16104857
44.

Functional and compositional comparison of two activated sludge communities remediating coking effluent.

Manefield M, Griffiths RI, Leigh MB, Fisher R, Whiteley AS.

Environ Microbiol. 2005 May;7(5):715-22.

PMID:
15819853
45.

Calibration and deployment of custom-designed bioreporters for protecting biological remediation consortia from toxic shock.

Wiles S, Lilley AK, Philp JC, Bailey MJ, Whiteley AS.

Environ Microbiol. 2005 Feb;7(2):260-9.

PMID:
15658993
46.

Raman microscopic analysis of single microbial cells.

Huang WE, Griffiths RI, Thompson IP, Bailey MJ, Whiteley AS.

Anal Chem. 2004 Aug 1;76(15):4452-8.

PMID:
15283587
47.

Unravelling rhizosphere-microbial interactions: opportunities and limitations.

Singh BK, Millard P, Whiteley AS, Murrell JC.

Trends Microbiol. 2004 Aug;12(8):386-93. Review.

PMID:
15276615
48.

13CO2 pulse labelling of plants in tandem with stable isotope probing: methodological considerations for examining microbial function in the rhizosphere.

Griffiths RI, Manefield M, Ostle N, McNamara N, O'Donnell AG, Bailey MJ, Whiteley AS.

J Microbiol Methods. 2004 Jul;58(1):119-29.

PMID:
15177910
49.

N-acyl-l-homoserine lactones (AHLs) affect microbial community composition and function in activated sludge.

Valle A, Bailey MJ, Whiteley AS, Manefield M.

Environ Microbiol. 2004 Apr;6(4):424-33.

PMID:
15008819
50.

Temporal dynamics and degradation activity of an bacterial inoculum for treating waste metal-working fluid.

van der Gast CJ, Whiteley AS, Thompson IP.

Environ Microbiol. 2004 Mar;6(3):254-63.

PMID:
14871209

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