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Items: 1 to 50 of 194

1.

Multi-scale resistant kernel surfaces derived from inferred gene flow: An application with vernal pool breeding salamanders.

Winiarski KJ, Peterman WE, Whiteley AR, McGarigal K.

Mol Ecol Resour. 2019 Sep 4. doi: 10.1111/1755-0998.13089. [Epub ahead of print]

PMID:
31484210
2.

Analysis of human cGAS activity and structure.

Zhou W, Whiteley AT, Kranzusch PJ.

Methods Enzymol. 2019;625:13-40. doi: 10.1016/bs.mie.2019.04.012. Epub 2019 May 2.

PMID:
31455523
3.

RNA Stable Isotope Probing (RNA-SIP).

Ghori NU, Moreira-Grez B, Vuong P, Waite I, Morald T, Wise M, Whiteley AS.

Methods Mol Biol. 2019;2046:31-44. doi: 10.1007/978-1-4939-9721-3_3.

PMID:
31407294
4.

Reconditioning Degraded Mine Site Soils With Exogenous Soil Microbes: Plant Fitness and Soil Microbiome Outcomes.

Moreira-Grez B, Muñoz-Rojas M, Kariman K, Storer P, O'Donnell AG, Kumaresan D, Whiteley AS.

Front Microbiol. 2019 Jul 10;10:1617. doi: 10.3389/fmicb.2019.01617. eCollection 2019.

5.

The Exciting Potential and Remaining Uncertainties of Genetic Rescue.

Bell DA, Robinson ZL, Funk WC, Fitzpatrick SW, Allendorf FW, Tallmon DA, Whiteley AR.

Trends Ecol Evol. 2019 Jul 8. pii: S0169-5347(19)30173-9. doi: 10.1016/j.tree.2019.06.006. [Epub ahead of print] Review.

PMID:
31296345
6.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Jul 8. doi: 10.1038/s41564-019-0494-6. [Epub ahead of print]

PMID:
31285584
7.

An unusual presentation of an uncommon lymphoma, hepatosplenic T-cell lymphoma.

Amin S, Findeis SK, Whiteley A, Krause JR.

Proc (Bayl Univ Med Cent). 2019 Jan 7;32(1):129-130. doi: 10.1080/08998280.2018.1509592. eCollection 2019 Jan.

8.

Bacterial cGAS-like enzymes synthesize diverse nucleotide signals.

Whiteley AT, Eaglesham JB, de Oliveira Mann CC, Morehouse BR, Lowey B, Nieminen EA, Danilchanka O, King DS, Lee ASY, Mekalanos JJ, Kranzusch PJ.

Nature. 2019 Mar;567(7747):194-199. doi: 10.1038/s41586-019-0953-5. Epub 2019 Feb 20.

9.

Response of Wheat to a Multiple Species Microbial Inoculant Compared to Fertilizer Application.

Assainar SK, Abbott LK, Mickan BS, Whiteley AS, Siddique KHM, Solaiman ZM.

Front Plant Sci. 2018 Nov 13;9:1601. doi: 10.3389/fpls.2018.01601. eCollection 2018.

10.

Extracellular Matrix Remodeling Regulates Glucose Metabolism through TXNIP Destabilization.

Sullivan WJ, Mullen PJ, Schmid EW, Flores A, Momcilovic M, Sharpley MS, Jelinek D, Whiteley AE, Maxwell MB, Wilde BR, Banerjee U, Coller HA, Shackelford DB, Braas D, Ayer DE, de Aguiar Vallim TQ, Lowry WE, Christofk HR.

Cell. 2018 Sep 20;175(1):117-132.e21. doi: 10.1016/j.cell.2018.08.017. Epub 2018 Sep 6.

PMID:
30197082
11.

Structure of the Human cGAS-DNA Complex Reveals Enhanced Control of Immune Surveillance.

Zhou W, Whiteley AT, de Oliveira Mann CC, Morehouse BR, Nowak RP, Fischer ES, Gray NS, Mekalanos JJ, Kranzusch PJ.

Cell. 2018 Jul 12;174(2):300-311.e11. doi: 10.1016/j.cell.2018.06.026.

12.

Symptomatic recurrent varicose veins due to primary avalvular varicose anomalies (PAVA): A previously unreported cause of recurrence.

Whiteley AM, Holdstock JM, Whiteley MS.

SAGE Open Med Case Rep. 2018 May 17;6:2050313X18777166. doi: 10.1177/2050313X18777166. eCollection 2018.

13.

Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses.

Kumaresan D, Stephenson J, Doxey AC, Bandukwala H, Brooks E, Hillebrand-Voiculescu A, Whiteley AS, Murrell JC.

Microbiome. 2018 Jan 2;6(1):1. doi: 10.1186/s40168-017-0383-2.

14.

Listeria monocytogenes triggers noncanonical autophagy upon phagocytosis, but avoids subsequent growth-restricting xenophagy.

Mitchell G, Cheng MI, Chen C, Nguyen BN, Whiteley AT, Kianian S, Cox JS, Green DR, McDonald KL, Portnoy DA.

Proc Natl Acad Sci U S A. 2018 Jan 9;115(2):E210-E217. doi: 10.1073/pnas.1716055115. Epub 2017 Dec 26.

15.

Activation of the Listeria monocytogenes Virulence Program by a Reducing Environment.

Portman JL, Dubensky SB, Peterson BN, Whiteley AT, Portnoy DA.

MBio. 2017 Oct 17;8(5). pii: e01595-17. doi: 10.1128/mBio.01595-17.

16.

Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins.

Whiteley AM, Prado MA, Peng I, Abbas AR, Haley B, Paulo JA, Reichelt M, Katakam A, Sagolla M, Modrusan Z, Lee DY, Roose-Girma M, Kirkpatrick DS, McKenzie BS, Gygi SP, Finley D, Brown EJ.

Elife. 2017 Sep 21;6. pii: e26435. doi: 10.7554/eLife.26435.

17.

No evidence for ecological segregation protecting native trout from invasive hybridization.

Kovach RP, Muhlfeld CC, Al-Chokhachy R, Amish SJ, Kershner JL, Leary RF, Lowe WH, Luikart G, Matson P, Schmetterling DA, Shepard BB, Westley PAH, Whited D, Whiteley A, Allendorf FW.

Glob Chang Biol. 2017 Dec;23(12):e11-e12. doi: 10.1111/gcb.13825. Epub 2017 Aug 17. No abstract available.

PMID:
28741850
18.

Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics.

Malik AA, Thomson BC, Whiteley AS, Bailey M, Griffiths RI.

MBio. 2017 Jul 5;8(4). pii: e00799-17. doi: 10.1128/mBio.00799-17.

19.

Experimental test of genetic rescue in isolated populations of brook trout.

Robinson ZL, Coombs JA, Hudy M, Nislow KH, Letcher BH, Whiteley AR.

Mol Ecol. 2017 Sep;26(17):4418-4433. doi: 10.1111/mec.14225. Epub 2017 Jul 29.

PMID:
28664980
20.

Legacy introductions and climatic variation explain spatiotemporal patterns of invasive hybridization in a native trout.

Muhlfeld CC, Kovach RP, Al-Chokhachy R, Amish SJ, Kershner JL, Leary RF, Lowe WH, Luikart G, Matson P, Schmetterling DA, Shepard BB, Westley PAH, Whited D, Whiteley A, Allendorf FW.

Glob Chang Biol. 2017 Nov;23(11):4663-4674. doi: 10.1111/gcb.13681. Epub 2017 Apr 4.

PMID:
28374524
21.

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration.

Kumaresan D, Cross AT, Moreira-Grez B, Kariman K, Nevill P, Stevens J, Allcock RJN, O'Donnell AG, Dixon KW, Whiteley AS.

Sci Rep. 2017 Apr 3;7(1):564. doi: 10.1038/s41598-017-00650-6.

22.

Keeping things local: Subpopulation Nb and Ne in a stream network with partial barriers to fish migration.

Whiteley AR, Coombs JA, O'Donnell MJ, Nislow KH, Letcher BH.

Evol Appl. 2017 Feb 9;10(4):348-365. doi: 10.1111/eva.12454. eCollection 2017 Apr.

23.

A Redox-Responsive Transcription Factor Is Critical for Pathogenesis and Aerobic Growth of Listeria monocytogenes.

Whiteley AT, Ruhland BR, Edrozo MB, Reniere ML.

Infect Immun. 2017 Apr 21;85(5). pii: e00978-16. doi: 10.1128/IAI.00978-16. Print 2017 May.

24.

Novel Primer Sets for Next Generation Sequencing-Based Analyses of Water Quality.

Lee E, Khurana MS, Whiteley AS, Monis PT, Bath A, Gordon C, Ryan UM, Paparini A.

PLoS One. 2017 Jan 24;12(1):e0170008. doi: 10.1371/journal.pone.0170008. eCollection 2017.

25.

Draft Genome Sequence of the Methane-Oxidizing Bacterium "Candidatus Methylomonas sp. LWB" Isolated from Movile Cave.

Stephenson J, Kumaresan D, Hillebrand-Voiculescu AM, Brooks E, Whiteley AS, Murrell JC.

Genome Announc. 2017 Jan 19;5(3). pii: e01491-16. doi: 10.1128/genomeA.01491-16.

26.

c-di-AMP modulates Listeria monocytogenes central metabolism to regulate growth, antibiotic resistance and osmoregulation.

Whiteley AT, Garelis NE, Peterson BN, Choi PH, Tong L, Woodward JJ, Portnoy DA.

Mol Microbiol. 2017 Apr;104(2):212-233. doi: 10.1111/mmi.13622. Epub 2017 Mar 8.

27.

Clinical practitioners' views on the management of patients with medically unexplained physical symptoms (MUPS): a qualitative study.

Brownell AK, Atkins C, Whiteley A, Woollard RF, Kornelsen J.

BMJ Open. 2016 Dec 21;6(12):e012379. doi: 10.1136/bmjopen-2016-012379.

28.

Soil Carbon-Fixation Rates and Associated Bacterial Diversity and Abundance in Three Natural Ecosystems.

Lynn TM, Ge T, Yuan H, Wei X, Wu X, Xiao K, Kumaresan D, Yu SS, Wu J, Whiteley AS.

Microb Ecol. 2017 Apr;73(3):645-657. doi: 10.1007/s00248-016-0890-x. Epub 2016 Nov 12.

PMID:
27838764
29.

Microbial phylogenetic and functional responses within acidified wastewater communities exhibiting enhanced phosphate uptake.

Weerasekara AW, Jenkins S, Abbott LK, Waite I, McGrath JW, Larma I, Eroglu E, O'Donnell A, Whiteley AS.

Bioresour Technol. 2016 Nov;220:55-61. doi: 10.1016/j.biortech.2016.08.037. Epub 2016 Aug 12.

PMID:
27566512
30.

An In Vivo Selection Identifies Listeria monocytogenes Genes Required to Sense the Intracellular Environment and Activate Virulence Factor Expression.

Reniere ML, Whiteley AT, Portnoy DA.

PLoS Pathog. 2016 Jul 14;12(7):e1005741. doi: 10.1371/journal.ppat.1005741. eCollection 2016 Jul.

31.

EGFR Fusions as Novel Therapeutic Targets in Lung Cancer.

Konduri K, Gallant JN, Chae YK, Giles FJ, Gitlitz BJ, Gowen K, Ichihara E, Owonikoko TK, Peddareddigari V, Ramalingam SS, Reddy SK, Eaby-Sandy B, Vavalà T, Whiteley A, Chen H, Yan Y, Sheehan JH, Meiler J, Morosini D, Ross JS, Stephens PJ, Miller VA, Ali SM, Lovly CM.

Cancer Discov. 2016 Jun;6(6):601-11. doi: 10.1158/2159-8290.CD-16-0075. Epub 2016 Apr 21.

32.

A hierarchical model of daily stream temperature using air-water temperature synchronization, autocorrelation, and time lags.

Letcher BH, Hocking DJ, O'Neil K, Whiteley AR, Nislow KH, O'Donnell MJ.

PeerJ. 2016 Feb 29;4:e1727. doi: 10.7717/peerj.1727. eCollection 2016.

33.

Stigma and Developmental Disabilities in Nursing Practice and Education.

Whiteley AD, Kurtz DL, Cash PA.

Issues Ment Health Nurs. 2016 Jan;37(1):26-33. doi: 10.3109/01612840.2015.1081654.

PMID:
26818930
34.

Effect of simulated tillage on microbial autotrophic CO2 fixation in paddy and upland soils.

Ge T, Wu X, Liu Q, Zhu Z, Yuan H, Wang W, Whiteley AS, Wu J.

Sci Rep. 2016 Jan 22;6:19784. doi: 10.1038/srep19784.

35.

Winners in the 2014 Naylor Prize competition.

Charman N, Heron G, Whiteley A.

Ophthalmic Physiol Opt. 2016 Jan;36(1):71-2. doi: 10.1111/opo.12267. No abstract available.

PMID:
26769328
36.

Changes in seasonal climate outpace compensatory density-dependence in eastern brook trout.

Bassar RD, Letcher BH, Nislow KH, Whiteley AR.

Glob Chang Biol. 2016 Feb;22(2):577-93. doi: 10.1111/gcb.13135. Epub 2016 Jan 6.

PMID:
26490737
37.

The evolutionary legacy of size-selective harvesting extends from genes to populations.

Uusi-Heikkilä S, Whiteley AR, Kuparinen A, Matsumura S, Venturelli PA, Wolter C, Slate J, Primmer CR, Meinelt T, Killen SS, Bierbach D, Polverino G, Ludwig A, Arlinghaus R.

Evol Appl. 2015 Jul;8(6):597-620. doi: 10.1111/eva.12268. Epub 2015 May 27.

38.

Effective number of breeders provides a link between interannual variation in stream flow and individual reproductive contribution in a stream salmonid.

Whiteley AR, Coombs JA, Cembrola M, O'Donnell MJ, Hudy M, Nislow KH, Letcher BH.

Mol Ecol. 2015 Jul;24(14):3585-602. doi: 10.1111/mec.13273. Epub 2015 Jul 14.

PMID:
26080621
39.

The PAMP c-di-AMP Is Essential for Listeria monocytogenes Growth in Rich but Not Minimal Media due to a Toxic Increase in (p)ppGpp. [corrected].

Whiteley AT, Pollock AJ, Portnoy DA.

Cell Host Microbe. 2015 Jun 10;17(6):788-98. doi: 10.1016/j.chom.2015.05.006. Epub 2015 May 28. Erratum in: Cell Host Microbe. 2015 Jul 8;18(1):132.

40.

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil.

Wu X, Ge T, Wang W, Yuan H, Wegner CE, Zhu Z, Whiteley AS, Wu J.

Front Microbiol. 2015 May 8;6:379. doi: 10.3389/fmicb.2015.00379. eCollection 2015.

41.

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP.

Kellenberger CA, Chen C, Whiteley AT, Portnoy DA, Hammond MC.

J Am Chem Soc. 2015 May 27;137(20):6432-5. doi: 10.1021/jacs.5b00275. Epub 2015 May 15.

42.

Abundance and Diversity of CO2-Assimilating Bacteria and Algae Within Red Agricultural Soils Are Modulated by Changing Management Practice.

Yuan H, Ge T, Chen X, Liu S, Zhu Z, Wu X, Wei W, Whiteley AS, Wu J.

Microb Ecol. 2015 Nov;70(4):971-80. doi: 10.1007/s00248-015-0621-8. Epub 2015 May 10.

PMID:
25956939
43.

Marine bacterial communities are resistant to elevated carbon dioxide levels.

Oliver AE, Newbold LK, Whiteley AS, van der Gast CJ.

Environ Microbiol Rep. 2014 Dec;6(6):574-82.

PMID:
25756110
44.

Glutathione activates virulence gene expression of an intracellular pathogen.

Reniere ML, Whiteley AT, Hamilton KL, John SM, Lauer P, Brennan RG, Portnoy DA.

Nature. 2015 Jan 8;517(7533):170-3. doi: 10.1038/nature14029.

45.

Chemical fixation methods for Raman spectroscopy-based analysis of bacteria.

Read DS, Whiteley AS.

J Microbiol Methods. 2015 Feb;109:79-83. doi: 10.1016/j.mimet.2014.12.008. Epub 2014 Dec 19.

PMID:
25533216
46.

Genetic rescue to the rescue.

Whiteley AR, Fitzpatrick SW, Funk WC, Tallmon DA.

Trends Ecol Evol. 2015 Jan;30(1):42-9. doi: 10.1016/j.tree.2014.10.009. Epub 2014 Nov 27. Review.

PMID:
25435267
47.

Robust estimates of environmental effects on population vital rates: an integrated capture-recapture model of seasonal brook trout growth, survival and movement in a stream network.

Letcher BH, Schueller P, Bassar RD, Nislow KH, Coombs JA, Sakrejda K, Morrissey M, Sigourney DB, Whiteley AR, O'Donnell MJ, Dubreuil TL.

J Anim Ecol. 2015 Mar;84(2):337-52. doi: 10.1111/1365-2656.12308. Epub 2014 Dec 3.

PMID:
25327608
48.

Pelvic venous reflux is a major contributory cause of recurrent varicose veins in more than a quarter of women.

Whiteley AM, Taylor DC, Dos Santos SJ, Whiteley MS.

J Vasc Surg Venous Lymphat Disord. 2014 Oct;2(4):411-5. doi: 10.1016/j.jvsv.2014.05.005. Epub 2014 Jun 24.

PMID:
26993547
49.

Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams.

Jane SF, Wilcox TM, McKelvey KS, Young MK, Schwartz MK, Lowe WH, Letcher BH, Whiteley AR.

Mol Ecol Resour. 2015 Jan;15(1):216-27. doi: 10.1111/1755-0998.12285. Epub 2014 Jun 13.

PMID:
24890199
50.

Weekly flow cytometric analysis of riverine phytoplankton to determine seasonal bloom dynamics.

Read DS, Bowes MJ, Newbold LK, Whiteley AS.

Environ Sci Process Impacts. 2014 Mar;16(3):594-603. doi: 10.1039/c3em00657c. Epub 2014 Feb 10.

PMID:
24510006

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