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Items: 1 to 50 of 223

1.

Physicochemical amino acid properties better describe substitution rates in large populations.

Weber CC, Whelan S.

Mol Biol Evol. 2019 Jan 21. doi: 10.1093/molbev/msz003. [Epub ahead of print]

PMID:
30668757
2.

PVRIG and PVRL2 Are Induced in Cancer and Inhibit CD8+ T-cell Function.

Whelan S, Ophir E, Kotturi MF, Levy O, Ganguly S, Leung L, Vaknin I, Kumar S, Dassa L, Hansen K, Bernados D, Murter B, Soni A, Taube JM, Fader AN, Wang TL, Shih IM, White M, Pardoll DM, Liang SC.

Cancer Immunol Res. 2019 Feb;7(2):257-268. doi: 10.1158/2326-6066.CIR-18-0442. Epub 2019 Jan 18.

PMID:
30659054
3.

The effect of by-product inclusion and concentrate feeding rate on milk production and composition, pasture dry matter intake, and nitrogen excretion of mid-late lactation spring-calving cows grazing a perennial ryegrass-based pasture.

Condren SA, Kelly AK, Lynch MB, Boland TM, Whelan SJ, Grace C, Rajauria G, Pierce KM.

J Dairy Sci. 2019 Feb;102(2):1247-1256. doi: 10.3168/jds.2018-14970. Epub 2018 Dec 20.

PMID:
30580955
4.

Sweat Testing in Ireland

Blake O, Tsang V, Ghori R, Whelan S, Boran G, Linnane B.

Ir Med J. 2018 Aug 13;111(7):789.

PMID:
30520616
5.

Phase Transitions Drive the Formation of Vesicular Stomatitis Virus Replication Compartments.

Heinrich BS, Maliga Z, Stein DA, Hyman AA, Whelan SPJ.

MBio. 2018 Sep 4;9(5). pii: e02290-17. doi: 10.1128/mBio.02290-17.

6.

Reconstruction of the cell entry pathway of an extinct virus.

Robinson-McCarthy LR, McCarthy KR, Raaben M, Piccinotti S, Nieuwenhuis J, Stubbs SH, Bakkers MJG, Whelan SPJ.

PLoS Pathog. 2018 Aug 6;14(8):e1007123. doi: 10.1371/journal.ppat.1007123. eCollection 2018 Aug.

7.

Identification of Potent Ebola Virus Entry Inhibitors with Suitable Properties for in Vivo Studies.

Liu H, Tian Y, Lee K, Krishnan P, Wang MK, Whelan S, Mevers E, Soloveva V, Dedic B, Liu X, Cunningham JM.

J Med Chem. 2018 Jul 3. doi: 10.1021/acs.jmedchem.8b00704. [Epub ahead of print]

PMID:
29920098
8.

PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences.

Whelan S, Irisarri I, Burki F.

Bioinformatics. 2018 Nov 15;34(22):3929-3930. doi: 10.1093/bioinformatics/bty448.

PMID:
29868763
9.

STING-dependent translation inhibition restricts RNA virus replication.

Franz KM, Neidermyer WJ, Tan YJ, Whelan SPJ, Kagan JC.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E2058-E2067. doi: 10.1073/pnas.1716937115. Epub 2018 Feb 12.

10.

NRP2 and CD63 Are Host Factors for Lujo Virus Cell Entry.

Raaben M, Jae LT, Herbert AS, Kuehne AI, Stubbs SH, Chou YY, Blomen VA, Kirchhausen T, Dye JM, Brummelkamp TR, Whelan SP.

Cell Host Microbe. 2017 Nov 8;22(5):688-696.e5. doi: 10.1016/j.chom.2017.10.002.

11.
12.

Investigating the Effect of Social Robot Embodiment.

Whelan S, Kouroupetroglou C, Santorelli A, Raciti M, Barrett E, Casey D.

Stud Health Technol Inform. 2017;242:523-526.

PMID:
28873848
13.

Interacting with Dementia: The MARIO Approach.

Kouroupetroglou C, Casey D, Raciti M, Barrett E, D'Onofrio G, Ricciardi F, Giuliani F, Greco A, Sancarlo D, Mannion A, Whelan S, Pegman G, Koumpis A, Reforgiato Recupero D, Kouroupetroglou A, Santorelli A.

Stud Health Technol Inform. 2017;242:38-47.

PMID:
28873774
14.

Human Regulatory Protein Ki-1/57 Is a Target of SUMOylation and Affects PML Nuclear Body Formation.

Saito Â, Souza EE, Costa FC, Meirelles GV, Gonçalves KA, Santos MT, Bressan GC, McComb ME, Costello CE, Whelan SA, Kobarg J.

J Proteome Res. 2017 Sep 1;16(9):3147-3157. doi: 10.1021/acs.jproteome.7b00001. Epub 2017 Jul 31.

PMID:
28695742
15.

Reduced reproductive performance associated with warmer ambient temperatures during incubation in a winter-breeding, food-storing passerine.

Whelan S, Strickland D, Morand-Ferron J, Norris DR.

Ecol Evol. 2017 Mar 23;7(9):3029-3036. doi: 10.1002/ece3.2864. eCollection 2017 May.

16.

Vesicular stomatitis virus N protein-specific single-domain antibody fragments inhibit replication.

Hanke L, Schmidt FI, Knockenhauer KE, Morin B, Whelan SP, Schwartz TU, Ploegh HL.

EMBO Rep. 2017 Jun;18(6):1027-1037. doi: 10.15252/embr.201643764. Epub 2017 Apr 10.

17.

What lies beneath: HSV meningitis in the asymptomatic infant.

Whelan S, Capra L.

Arch Dis Child. 2017 Oct;102(10):987. doi: 10.1136/archdischild-2016-311841. Epub 2017 Feb 2. No abstract available.

PMID:
28154005
18.

The effect of by-product inclusion level on milk production, nutrient digestibility and excretion, and rumen fermentation parameters in lactating dairy cows offered a pasture-based diet.

Whelan SJ, Carey W, Boland TM, Lynch MB, Kelly AK, Rajauria G, Pierce KM.

J Dairy Sci. 2017 Feb;100(2):1055-1062. doi: 10.3168/jds.2016-11600. Epub 2016 Dec 14.

PMID:
27988110
19.

Mechanism of membrane fusion induced by vesicular stomatitis virus G protein.

Kim IS, Jenni S, Stanifer ML, Roth E, Whelan SP, van Oijen AM, Harrison SC.

Proc Natl Acad Sci U S A. 2017 Jan 3;114(1):E28-E36. doi: 10.1073/pnas.1618883114. Epub 2016 Dec 14.

20.

Inferring Trees.

Whelan S, Morrison DA.

Methods Mol Biol. 2017;1525:349-377.

PMID:
27896728
21.

Adult microbiota-deficient mice have distinct dendritic morphological changes: differential effects in the amygdala and hippocampus.

Luczynski P, Whelan SO, O'Sullivan C, Clarke G, Shanahan F, Dinan TG, Cryan JF.

Eur J Neurosci. 2016 Nov;44(9):2654-2666. doi: 10.1111/ejn.13291. Epub 2016 Jul 8.

22.

An In Vitro RNA Synthesis Assay for Rabies Virus Defines Ribonucleoprotein Interactions Critical for Polymerase Activity.

Morin B, Liang B, Gardner E, Ross RA, Whelan SP.

J Virol. 2016 Dec 16;91(1). pii: e01508-16. Print 2017 Jan 1.

23.

Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking.

Bogusz M, Whelan S.

Syst Biol. 2017 Mar 1;66(2):218-231. doi: 10.1093/sysbio/syw074.

PMID:
27633353
24.

Phenotypic lentivirus screens to identify functional single domain antibodies.

Schmidt FI, Hanke L, Morin B, Brewer R, Brusic V, Whelan SP, Ploegh HL.

Nat Microbiol. 2016 Jun 20;1(8):16080. doi: 10.1038/nmicrobiol.2016.80.

25.

Intermediate filaments enable pathogen docking to trigger type 3 effector translocation.

Russo BC, Stamm LM, Raaben M, Kim CM, Kahoud E, Robinson LR, Bose S, Queiroz AL, Herrera BB, Baxt LA, Mor-Vaknin N, Fu Y, Molina G, Markovitz DM, Whelan SP, Goldberg MB.

Nat Microbiol. 2016 Mar 7;1:16025. doi: 10.1038/nmicrobiol.2016.25.

26.

Tissue-resident Eomes(hi) T-bet(lo) CD56(bright) NK cells with reduced proinflammatory potential are enriched in the adult human liver.

Harmon C, Robinson MW, Fahey R, Whelan S, Houlihan DD, Geoghegan J, O'Farrelly C.

Eur J Immunol. 2016 Sep;46(9):2111-20. doi: 10.1002/eji.201646559.

27.

Rabies Internalizes into Primary Peripheral Neurons via Clathrin Coated Pits and Requires Fusion at the Cell Body.

Piccinotti S, Whelan SP.

PLoS Pathog. 2016 Jul 27;12(7):e1005753. doi: 10.1371/journal.ppat.1005753. eCollection 2016 Jul.

28.

Production of immunogenic West Nile virus-like particles using a herpes simplex virus 1 recombinant vector.

Taylor TJ, Diaz F, Colgrove RC, Bernard KA, DeLuca NA, Whelan SPJ, Knipe DM.

Virology. 2016 Sep;496:186-193. doi: 10.1016/j.virol.2016.06.006. Epub 2016 Jun 20.

29.

A Single Residue in Ebola Virus Receptor NPC1 Influences Cellular Host Range in Reptiles.

Ndungo E, Herbert AS, Raaben M, Obernosterer G, Biswas R, Miller EH, Wirchnianski AS, Carette JE, Brummelkamp TR, Whelan SP, Dye JM, Chandran K.

mSphere. 2016 Mar 30;1(2). pii: e00007-16. doi: 10.1128/mSphere.00007-16. eCollection 2016 Mar-Apr.

30.

Correction for Soh and Whelan, Tracking the Fate of Genetically Distinct Vesicular Stomatitis Virus Matrix Proteins Highlights the Role for Late Domains in Assembly.

Soh TK, Whelan SPJ.

J Virol. 2016 May 27;90(12):5847. doi: 10.1128/JVI.00633-16. Print 2016 Jun 15. No abstract available.

31.

O-Linked N-Acetylglucosamine (O-GlcNAc) Transferase and O-GlcNAcase Interact with Mi2β Protein at the Aγ-Globin Promoter.

Zhang Z, Costa FC, Tan EP, Bushue N, DiTacchio L, Costello CE, McComb ME, Whelan SA, Peterson KR, Slawson C.

J Biol Chem. 2016 Jul 22;291(30):15628-40. doi: 10.1074/jbc.M116.721928. Epub 2016 May 26.

32.

A New Transferrin Receptor Aptamer Inhibits New World Hemorrhagic Fever Mammarenavirus Entry.

Maier KE, Jangra RK, Shieh KR, Cureton DK, Xiao H, Snapp EL, Whelan SP, Chandran K, Levy M.

Mol Ther Nucleic Acids. 2016 May 24;5:e321. doi: 10.1038/mtna.2016.32.

33.

Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.

Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW.

J Proteome Res. 2016 Jul 1;15(7):2254-64. doi: 10.1021/acs.jproteome.6b00250. Epub 2016 Jun 2.

PMID:
27213235
34.

The emotional impact of a maternal death.

Whelan S.

Pract Midwife. 2016 Apr;19(4):24-5.

PMID:
27172677
35.

Epithelial Mesenchymal Transition Induces Aberrant Glycosylation through Hexosamine Biosynthetic Pathway Activation.

Lucena MC, Carvalho-Cruz P, Donadio JL, Oliveira IA, de Queiroz RM, Marinho-Carvalho MM, Sola-Penna M, de Paula IF, Gondim KC, McComb ME, Costello CE, Whelan SA, Todeschini AR, Dias WB.

J Biol Chem. 2016 Jun 17;291(25):12917-29. doi: 10.1074/jbc.M116.729236. Epub 2016 Apr 18.

36.

Repeatable Population Dynamics among Vesicular Stomatitis Virus Lineages Evolved under High Co-infection.

Williams ES, Morales NM, Wasik BR, Brusic V, Whelan SP, Turner PE.

Front Microbiol. 2016 Mar 31;7:370. doi: 10.3389/fmicb.2016.00370. eCollection 2016.

37.

Identification and Characterization of a Novel Broad-Spectrum Virus Entry Inhibitor.

Chou YY, Cuevas C, Carocci M, Stubbs SH, Ma M, Cureton DK, Chao L, Evesson F, He K, Yang PL, Whelan SP, Ross SR, Kirchhausen T, Gaudin R.

J Virol. 2016 Apr 14;90(9):4494-4510. doi: 10.1128/JVI.00103-16. Print 2016 May.

38.

Myeloid Engraftment in Humanized Mice: Impact of Granulocyte-Colony Stimulating Factor Treatment and Transgenic Mouse Strain.

Coughlan AM, Harmon C, Whelan S, O'Brien EC, O'Reilly VP, Crotty P, Kelly P, Ryan M, Hickey FB, O'Farrelly C, Little MA.

Stem Cells Dev. 2016 Apr 1;25(7):530-41. doi: 10.1089/scd.2015.0289.

PMID:
26879149
39.

Infectious Entry Pathway Mediated by the Human Endogenous Retrovirus K Envelope Protein.

Robinson LR, Whelan SP.

J Virol. 2016 Jan 20;90(7):3640-9. doi: 10.1128/JVI.03136-15.

40.

Overexpression of Catalase Diminishes Oxidative Cysteine Modifications of Cardiac Proteins.

Yao C, Behring JB, Shao D, Sverdlov AL, Whelan SA, Elezaby A, Yin X, Siwik DA, Seta F, Costello CE, Cohen RA, Matsui R, Colucci WS, McComb ME, Bachschmid MM.

PLoS One. 2015 Dec 7;10(12):e0144025. doi: 10.1371/journal.pone.0144025. eCollection 2015.

41.

Impact of Atrial Fibrillation and Sinus Rhythm Restoration on Reticulated Platelets.

Tafur AJ, McBane RD, Ammash N, Asirvatham SJ, Miller RD, Janczak D, Slusser JP, Grill DE, Whelan SL, Wysokinski WE.

Mayo Clin Proc. 2015 Dec;90(12):1650-8. doi: 10.1016/j.mayocp.2015.09.013. Epub 2015 Oct 30.

PMID:
26527035
42.
43.

Biosynthetic Machinery Involved in Aberrant Glycosylation: Promising Targets for Developing of Drugs Against Cancer.

Vasconcelos-Dos-Santos A, Oliveira IA, Lucena MC, Mantuano NR, Whelan SA, Dias WB, Todeschini AR.

Front Oncol. 2015 Jun 25;5:138. doi: 10.3389/fonc.2015.00138. eCollection 2015. Review.

44.

Structure of the L Protein of Vesicular Stomatitis Virus from Electron Cryomicroscopy.

Liang B, Li Z, Jenni S, Rahmeh AA, Morin BM, Grant T, Grigorieff N, Harrison SC, Whelan SPJ.

Cell. 2015 Jul 16;162(2):314-327. doi: 10.1016/j.cell.2015.06.018. Epub 2015 Jul 2.

45.

Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty.

Md Mukarram Hossain AS, Blackburne BP, Shah A, Whelan S.

Genome Biol Evol. 2015 Jul 1;7(8):2102-16. doi: 10.1093/gbe/evv127.

46.

Niemann-pick C1 is essential for ebolavirus replication and pathogenesis in vivo.

Herbert AS, Davidson C, Kuehne AI, Bakken R, Braigen SZ, Gunn KE, Whelan SP, Brummelkamp TR, Twenhafel NA, Chandran K, Walkley SU, Dye JM.

MBio. 2015 May 26;6(3):e00565-15. doi: 10.1128/mBio.00565-15.

47.

Rethinking the Response to Emerging Microbes: Vaccines and Therapeutics in the Ebola Era--a Conference at Harvard Medical School.

Knipe DM, Whelan SP.

J Virol. 2015 Aug;89(15):7446-8. doi: 10.1128/JVI.01251-15. Epub 2015 May 20.

48.

Covariation Is a Poor Measure of Molecular Coevolution.

Talavera D, Lovell SC, Whelan S.

Mol Biol Evol. 2015 Sep;32(9):2456-68. doi: 10.1093/molbev/msv109. Epub 2015 May 4.

49.

Recoding of the vesicular stomatitis virus L gene by computer-aided design provides a live, attenuated vaccine candidate.

Wang B, Yang C, Tekes G, Mueller S, Paul A, Whelan SP, Wimmer E.

MBio. 2015 Mar 31;6(2). pii: e00237-15. doi: 10.1128/mBio.00237-15.

50.

GeLL: a generalized likelihood library for phylogenetic models.

Money D, Whelan S.

Bioinformatics. 2015 Jul 15;31(14):2391-3. doi: 10.1093/bioinformatics/btv126. Epub 2015 Feb 27.

PMID:
25725494

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