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Items: 35

1.

Minimum founding populations for the first peopling of Sahul.

Bradshaw CJA, Ulm S, Williams AN, Bird MI, Roberts RG, Jacobs Z, Laviano F, Weyrich LS, Friedrich T, Norman K, Saltré F.

Nat Ecol Evol. 2019 Jul;3(7):1057-1063. doi: 10.1038/s41559-019-0902-6. Epub 2019 Jun 17.

PMID:
31209287
2.

Relating Urban Biodiversity to Human Health With the 'Holobiont' Concept.

Mills JG, Brookes JD, Gellie NJC, Liddicoat C, Lowe AJ, Sydnor HR, Thomas T, Weinstein P, Weyrich LS, Breed MF.

Front Microbiol. 2019 Mar 26;10:550. doi: 10.3389/fmicb.2019.00550. eCollection 2019.

3.

Laboratory contamination over time during low-biomass sample analysis.

Weyrich LS, Farrer AG, Eisenhofer R, Arriola LA, Young J, Selway CA, Handsley-Davis M, Adler CJ, Breen J, Cooper A.

Mol Ecol Resour. 2019 Jul;19(4):982-996. doi: 10.1111/1755-0998.13011. Epub 2019 Apr 29.

PMID:
30887686
4.

Assessing alignment-based taxonomic classification of ancient microbial DNA.

Eisenhofer R, Weyrich LS.

PeerJ. 2019 Mar 13;7:e6594. doi: 10.7717/peerj.6594. eCollection 2019.

5.

Retrospective eDNA assessment of potentially harmful algae in historical ship ballast tank and marine port sediments.

Shaw JLA, Weyrich LS, Hallegraeff G, Cooper A.

Mol Ecol. 2019 May;28(10):2476-2485. doi: 10.1111/mec.15055. Epub 2019 May 13.

PMID:
30793442
6.

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS.

Trends Microbiol. 2019 Feb;27(2):105-117. doi: 10.1016/j.tim.2018.11.003. Epub 2018 Nov 26. Review.

PMID:
30497919
7.

Consequences of colonialism: A microbial perspective to contemporary Indigenous health.

Skelly E, Kapellas K, Cooper A, Weyrich LS.

Am J Phys Anthropol. 2018 Oct;167(2):423-437. doi: 10.1002/ajpa.23637. Epub 2018 Aug 29.

PMID:
30159882
8.

Proper Authentication of Ancient DNA Is Still Essential.

Eisenhofer R, Weyrich LS.

Genes (Basel). 2018 Feb 26;9(3). pii: E122. doi: 10.3390/genes9030122.

9.

Coprolites reveal ecological interactions lost with the extinction of New Zealand birds.

Boast AP, Weyrich LS, Wood JR, Metcalf JL, Knight R, Cooper A.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1546-1551. doi: 10.1073/pnas.1712337115.

10.

The influence of Antarctic subglacial volcanism on the global iron cycle during the Last Glacial Maximum.

Frisia S, Weyrich LS, Hellstrom J, Borsato A, Golledge NR, Anesio AM, Bajo P, Drysdale RN, Augustinus PC, Rivard C, Cooper A.

Nat Commun. 2017 Jun 9;8:15425. doi: 10.1038/ncomms15425.

11.

Reply to Santiago-Rodriguez et al.: proper authentication of ancient DNA is essential.

Eisenhofer R, Cooper A, Weyrich LS.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix042. No abstract available.

PMID:
28369385
12.

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus.

Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Cooper A.

Nature. 2017 Apr 20;544(7650):357-361. doi: 10.1038/nature21674. Epub 2017 Mar 8.

PMID:
28273061
13.

Embracing the gut microbiota: the new frontier for inflammatory and infectious diseases.

van den Elsen LW, Poyntz HC, Weyrich LS, Young W, Forbes-Blom EE.

Clin Transl Immunology. 2017 Jan 20;6(1):e125. doi: 10.1038/cti.2016.91. eCollection 2017 Jan. Review.

14.

Soil DNA metabarcoding and high-throughput sequencing as a forensic tool: considerations, potential limitations and recommendations.

Young JM, Austin JJ, Weyrich LS.

FEMS Microbiol Ecol. 2017 Feb;93(2). pii: fiw207. Epub 2016 Oct 8.

PMID:
27979996
15.

Exploring Relationships between Host Genome and Microbiome: New Insights from Genome-Wide Association Studies.

Abdul-Aziz MA, Cooper A, Weyrich LS.

Front Microbiol. 2016 Oct 12;7:1611. eCollection 2016. Review.

16.

Isolating Viable Ancient Bacteria: What You Put In Is What You Get Out.

Eisenhofer R, Cooper A, Weyrich LS.

Genome Announc. 2016 Aug 25;4(4). pii: e00712-16. doi: 10.1128/genomeA.00712-16. No abstract available.

17.

High-throughput Sequencing of Trace Quantities of Soil Provides Reproducible and Discriminative Fungal DNA Profiles.

Young JM, Weyrich LS, Cooper A.

J Forensic Sci. 2016 Mar;61(2):478-484. doi: 10.1111/1556-4029.12996. Epub 2016 Feb 1.

PMID:
27404621
18.

Type Six Secretion System of Bordetella bronchiseptica and Adaptive Immune Components Limit Intracellular Survival During Infection.

Bendor L, Weyrich LS, Linz B, Rolin OY, Taylor DL, Goodfield LL, Smallridge WE, Kennett MJ, Harvill ET.

PLoS One. 2015 Oct 20;10(10):e0140743. doi: 10.1371/journal.pone.0140743. eCollection 2015.

19.

The microbiome of otitis media with effusion in Indigenous Australian children.

Jervis-Bardy J, Rogers GB, Morris PS, Smith-Vaughan HC, Nosworthy E, Leong LE, Smith RJ, Weyrich LS, De Haan J, Carney AS, Leach AJ, O'Leary S, Marsh RL.

Int J Pediatr Otorhinolaryngol. 2015 Sep;79(9):1548-55. doi: 10.1016/j.ijporl.2015.07.013. Epub 2015 Jul 17.

PMID:
26228497
20.

Using Amplicon Sequencing To Characterize and Monitor Bacterial Diversity in Drinking Water Distribution Systems.

Shaw JL, Monis P, Weyrich LS, Sawade E, Drikas M, Cooper AJ.

Appl Environ Microbiol. 2015 Sep;81(18):6463-73. doi: 10.1128/AEM.01297-15. Epub 2015 Jul 10.

21.

Reintroduction of locally extinct vertebrates impacts arid soil fungal communities.

Clarke LJ, Weyrich LS, Cooper A.

Mol Ecol. 2015 Jun;24(12):3194-205. doi: 10.1111/mec.13229.

PMID:
25943906
22.

Predicting the origin of soil evidence: High throughput eukaryote sequencing and MIR spectroscopy applied to a crime scene scenario.

Young JM, Weyrich LS, Breen J, Macdonald LM, Cooper A.

Forensic Sci Int. 2015 Jun;251:22-31. doi: 10.1016/j.forsciint.2015.03.008. Epub 2015 Mar 23.

PMID:
25839677
23.

Residual soil DNA extraction increases the discriminatory power between samples.

Young JM, Weyrich LS, Clarke LJ, Cooper A.

Forensic Sci Med Pathol. 2015 Jun;11(2):268-72. doi: 10.1007/s12024-015-9662-z. Epub 2015 Feb 27.

PMID:
25722081
24.

The skin microbiome: Associations between altered microbial communities and disease.

Weyrich LS, Dixit S, Farrer AG, Cooper AJ, Cooper AJ.

Australas J Dermatol. 2015 Nov;56(4):268-74. doi: 10.1111/ajd.12253. Epub 2015 Feb 25. Review.

PMID:
25715969
25.

Ancient DNA analysis of dental calculus.

Weyrich LS, Dobney K, Cooper A.

J Hum Evol. 2015 Feb;79:119-24. doi: 10.1016/j.jhevol.2014.06.018. Epub 2014 Dec 1.

PMID:
25476244
26.

Forensic soil DNA analysis using high-throughput sequencing: a comparison of four molecular markers.

Young JM, Weyrich LS, Cooper A.

Forensic Sci Int Genet. 2014 Nov;13:176-84. doi: 10.1016/j.fsigen.2014.07.014. Epub 2014 Aug 4.

PMID:
25151602
27.

Limitations and recommendations for successful DNA extraction from forensic soil samples: a review.

Young JM, Rawlence NJ, Weyrich LS, Cooper A.

Sci Justice. 2014 May;54(3):238-44. doi: 10.1016/j.scijus.2014.02.006. Epub 2014 Mar 11. Review.

PMID:
24796953
28.

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias.

Clarke LJ, Soubrier J, Weyrich LS, Cooper A.

Mol Ecol Resour. 2014 Nov;14(6):1160-70. doi: 10.1111/1755-0998.12265. Epub 2014 May 14.

PMID:
24751203
29.

Reply to Santiago-Rodriguez et al.: Was luxS really isolated from 25- to 40-million-year-old bacteria?

Weyrich LS, Llamas B, Cooper A.

FEMS Microbiol Lett. 2014 Apr;353(2):85-6. doi: 10.1111/1574-6968.12415. Epub 2014 Apr 2. No abstract available.

30.

Resident microbiota affect Bordetella pertussis infectious dose and host specificity.

Weyrich LS, Feaga HA, Park J, Muse SJ, Safi CY, Rolin OY, Young SE, Harvill ET.

J Infect Dis. 2014 Mar;209(6):913-21. doi: 10.1093/infdis/jit597. Epub 2013 Nov 13.

31.

Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions.

Adler CJ, Dobney K, Weyrich LS, Kaidonis J, Walker AW, Haak W, Bradshaw CJ, Townsend G, Sołtysiak A, Alt KW, Parkhill J, Cooper A.

Nat Genet. 2013 Apr;45(4):450-5, 455e1. doi: 10.1038/ng.2536. Epub 2013 Feb 17.

32.

Teaching ethical aptitude to graduate student researchers.

Weyrich LS, Harvill ET.

Account Res. 2013;20(1):5-12. doi: 10.1080/08989621.2013.749742.

PMID:
23281581
33.

Lack of cross-protection against Bordetella holmesii after pertussis vaccination.

Zhang X, Weyrich LS, Lavine JS, Karanikas AT, Harvill ET.

Emerg Infect Dis. 2012 Nov;18(11):1771-9. doi: 10.3201/eid1811.111544.

34.

A Type VI secretion system encoding locus is required for Bordetella bronchiseptica immunomodulation and persistence in vivo.

Weyrich LS, Rolin OY, Muse SJ, Park J, Spidale N, Kennett MJ, Hester SE, Chen C, Dudley EG, Harvill ET.

PLoS One. 2012;7(10):e45892. doi: 10.1371/journal.pone.0045892. Epub 2012 Oct 12.

35.

Role of the type III secretion system in a hypervirulent lineage of Bordetella bronchiseptica.

Buboltz AM, Nicholson TL, Weyrich LS, Harvill ET.

Infect Immun. 2009 Sep;77(9):3969-77. doi: 10.1128/IAI.01362-08. Epub 2009 Jul 13.

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