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Items: 39

1.

A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes.

Na H, Laver JD, Jeon J, Singh F, Ancevicius K, Fan Y, Cao WX, Nie K, Yang Z, Luo H, Wang M, Rissland O, Westwood JT, Kim PM, Smibert CA, Lipshitz HD, Sidhu SS.

RNA. 2016 Apr;22(4):636-55. doi: 10.1261/rna.055186.115. Epub 2016 Feb 4.

2.

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.

Laver JD, Li X, Ray D, Cook KB, Hahn NA, Nabeel-Shah S, Kekis M, Luo H, Marsolais AJ, Fung KY, Hughes TR, Westwood JT, Sidhu SS, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2015 May 12;16:94. doi: 10.1186/s13059-015-0659-4.

3.

Transcriptional profile of muscle following acute induction of symptoms in a mouse model of Kennedy's disease/spinobulbar muscular atrophy.

Halievski K, Mo K, Westwood JT, Monks DA.

PLoS One. 2015 Feb 26;10(2):e0118120. doi: 10.1371/journal.pone.0118120. eCollection 2015.

4.

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Chen L, Dumelie JG, Li X, Cheng MH, Yang Z, Laver JD, Siddiqui NU, Westwood JT, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2014 Jan 7;15(1):R4. doi: 10.1186/gb-2014-15-1-r4.

5.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Laver JD, Li X, Ancevicius K, Westwood JT, Smibert CA, Morris QD, Lipshitz HD.

Nucleic Acids Res. 2013 Nov;41(20):9438-60. doi: 10.1093/nar/gkt702. Epub 2013 Aug 13.

6.

Prediction of Drosophila melanogaster gene function using Support Vector Machines.

Mitsakakis N, Razak Z, Escobar M, Westwood JT.

BioData Min. 2013 Apr 2;6(1):8. doi: 10.1186/1756-0381-6-8.

7.

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics.

Jaime MD, Lopez-Llorca LV, Conesa A, Lee AY, Proctor M, Heisler LE, Gebbia M, Giaever G, Westwood JT, Nislow C.

BMC Genomics. 2012 Jun 22;13:267. doi: 10.1186/1471-2164-13-267.

8.

Synthetic antibodies as tools to probe RNA-binding protein function.

Laver JD, Ancevicius K, Sollazzo P, Westwood JT, Sidhu SS, Lipshitz HD, Smibert CA.

Mol Biosyst. 2012 Jun;8(6):1650-7. doi: 10.1039/c2mb00007e. Epub 2012 Apr 5.

PMID:
22481296
9.

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells.

Siddiqui NU, Li X, Luo H, Karaiskakis A, Hou H, Kislinger T, Westwood JT, Morris Q, Lipshitz HD.

Genome Biol. 2012 Feb 20;13(2):R11. doi: 10.1186/gb-2012-13-2-r11.

10.

Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster.

Zhang J, Marshall KE, Westwood JT, Clark MS, Sinclair BJ.

J Exp Biol. 2011 Dec 1;214(Pt 23):4021-9. doi: 10.1242/jeb.059535.

11.

Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster.

Gonsalves SE, Neal SJ, Kehoe AS, Westwood JT.

BMC Genomics. 2011 Sep 29;12:475. doi: 10.1186/1471-2164-12-475.

12.

Identification of heat shock factor 1 molecular and cellular targets during embryonic and adult female meiosis.

Le Masson F, Razak Z, Kaigo M, Audouard C, Charry C, Cooke H, Westwood JT, Christians ES.

Mol Cell Biol. 2011 Aug;31(16):3410-23. doi: 10.1128/MCB.05237-11. Epub 2011 Jun 20.

13.

Whole-genome analysis reveals that active heat shock factor binding sites are mostly associated with non-heat shock genes in Drosophila melanogaster.

Gonsalves SE, Moses AM, Razak Z, Robert F, Westwood JT.

PLoS One. 2011 Jan 14;6(1):e15934. doi: 10.1371/journal.pone.0015934.

14.

Epigenetic regulation of learning and memory by Drosophila EHMT/G9a.

Kramer JM, Kochinke K, Oortveld MA, Marks H, Kramer D, de Jong EK, Asztalos Z, Westwood JT, Stunnenberg HG, Sokolowski MB, Keleman K, Zhou H, van Bokhoven H, Schenck A.

PLoS Biol. 2011 Jan 4;9(1):e1000569. doi: 10.1371/journal.pbio.1000569.

15.

Microarray analysis of gene expression by skeletal muscle of three mouse models of Kennedy disease/spinal bulbar muscular atrophy.

Mo K, Razak Z, Rao P, Yu Z, Adachi H, Katsuno M, Sobue G, Lieberman AP, Westwood JT, Monks DA.

PLoS One. 2010 Sep 23;5(9):e12922. doi: 10.1371/journal.pone.0012922.

16.

Chronic alcohol exposure induced gene expression changes in the zebrafish brain.

Pan Y, Kaiguo M, Razak Z, Westwood JT, Gerlai R.

Behav Brain Res. 2011 Jan 1;216(1):66-76. doi: 10.1016/j.bbr.2010.07.017. Epub 2010 Jul 21.

17.

Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22.

Kim HJ, Morrow G, Westwood JT, Michaud S, Tanguay RM.

Exp Gerontol. 2010 Aug;45(7-8):611-20. doi: 10.1016/j.exger.2009.12.012. Epub 2009 Dec 29.

PMID:
20036725
18.

An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition.

Benoit B, He CH, Zhang F, Votruba SM, Tadros W, Westwood JT, Smibert CA, Lipshitz HD, Theurkauf WE.

Development. 2009 Mar;136(6):923-32. doi: 10.1242/dev.031815.

19.

Measuring mRNA stability during early Drosophila embryogenesis.

Semotok JL, Westwood JT, Goldman AL, Cooperstock RL, Lipshitz HD.

Methods Enzymol. 2008;448:299-334. doi: 10.1016/S0076-6879(08)02616-5.

PMID:
19111183
20.

The mother-to-child transition.

Tadros W, Westwood JT, Lipshitz HD.

Dev Cell. 2007 Jun;12(6):847-9. Review.

21.

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

Tadros W, Goldman AL, Babak T, Menzies F, Vardy L, Orr-Weaver T, Hughes TR, Westwood JT, Smibert CA, Lipshitz HD.

Dev Cell. 2007 Jan;12(1):143-55.

22.

Optimizing experiment and analysis parameters for spotted microarrays.

Neal SJ, Westwood JT.

Methods Enzymol. 2006;410:203-21. Review.

PMID:
16938553
23.

Thermoprotection of synaptic transmission in a Drosophila heat shock factor mutant is accompanied by increased expression of Hsp83 and DnaJ-1.

Neal SJ, Karunanithi S, Best A, So AK, Tanguay RM, Atwood HL, Westwood JT.

Physiol Genomics. 2006 May 16;25(3):493-501. Epub 2006 Apr 4.

PMID:
16595740
24.

Cold hardening and transcriptional change in Drosophila melanogaster.

Qin W, Neal SJ, Robertson RM, Westwood JT, Walker VK.

Insect Mol Biol. 2005 Dec;14(6):607-13.

PMID:
16313561
25.

Drosophila soluble guanylyl cyclase mutants exhibit increased foraging locomotion: behavioral and genomic investigations.

Riedl CA, Neal SJ, Robichon A, Westwood JT, Sokolowski MB.

Behav Genet. 2005 May;35(3):231-44.

PMID:
15864439
26.
27.

Visualization of nascent transcripts on Drosophila polytene chromosomes using BrUTP incorporation.

Chang WY, Winegarden NA, Paraiso JP, Stevens ML, Westwood JT.

Biotechniques. 2000 Nov;29(5):934-6. No abstract available.

28.

Human heat shock factor 1 is predominantly a nuclear protein before and after heat stress.

Mercier PA, Winegarden NA, Westwood JT.

J Cell Sci. 1999 Aug;112 ( Pt 16):2765-74.

29.

Cell-specific expression and heat-shock induction of Hsps during spermatogenesis in Drosophila melanogaster.

Michaud S, Marin R, Westwood JT, Tanguay RM.

J Cell Sci. 1997 Sep;110 ( Pt 17):1989-97.

30.

Xenopus heat shock factor 1 is a nuclear protein before heat stress.

Mercier PA, Foksa J, Ovsenek N, Westwood JT.

J Biol Chem. 1997 May 30;272(22):14147-51.

33.

Stress-induced oligomerization and chromosomal relocalization of heat-shock factor.

Westwood JT, Clos J, Wu C.

Nature. 1991 Oct 31;353(6347):822-7.

PMID:
1944557
34.

Molecular cloning and expression of a hexameric Drosophila heat shock factor subject to negative regulation.

Clos J, Westwood JT, Becker PB, Wilson S, Lambert K, Wu C.

Cell. 1990 Nov 30;63(5):1085-97.

PMID:
2257625
35.
36.

Patterns of protein synthesis during the cell cycle of Chinese hamster ovary cells.

Westwood JT, Church RB, Wagenaar EB.

Biochem Cell Biol. 1987 Mar;65(3):219-29.

PMID:
3580170
37.

Changes in protein phosphorylation during the cell cycle of Chinese hamster ovary cells.

Westwood JT, Church RB, Wagenaar EB.

J Biol Chem. 1985 Aug 25;260(18):10308-13.

38.

Synthesis of unique low molecular weight proteins during late G2 and mitosis.

Westwood JT, Wagenaar EB, Church RB.

J Biol Chem. 1985 Jan 25;260(2):695-8.

39.

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