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Items: 1 to 50 of 71

1.

Experimental warming alters the community composition, diversity, and N2 fixation activity of peat moss (Sphagnum fallax) microbiomes.

Carrell AA, Kolton M, Glass JB, Pelletier DA, Warren MJ, Kostka JE, Iversen CM, Hanson PJ, Weston DJ.

Glob Chang Biol. 2019 Sep;25(9):2993-3004. doi: 10.1111/gcb.14715. Epub 2019 Jul 2.

PMID:
31148286
2.

Correction to: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.

Yin H, Guo HB, Weston DJ, Borland AM, Ranjan P, Abraham PE, Jawdy SS, Wachira J, Tuskan GA, Tschaplinski TJ, Wullschleger SD, Guo H, Hettich RL, Gross SM, Wang Z, Visel A, Yang X.

BMC Genomics. 2019 Apr 10;20(1):279. doi: 10.1186/s12864-019-5663-8.

3.

Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations.

Nagy G, Veličković D, Chu RK, Carrell AA, Weston DJ, Ibrahim YM, Anderton CR, Smith RD.

Chem Commun (Camb). 2019 Jan 2;55(3):306-309. doi: 10.1039/c8cc07482h.

4.

Diversity of Active Viral Infections within the Sphagnum Microbiome.

Stough JMA, Kolton M, Kostka JE, Weston DJ, Pelletier DA, Wilhelm SW.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01124-18. doi: 10.1128/AEM.01124-18. Print 2018 Dec 1.

5.

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave.

Yin H, Guo HB, Weston DJ, Borland AM, Ranjan P, Abraham PE, Jawdy SS, Wachira J, Tuskan GA, Tschaplinski TJ, Wullschleger SD, Guo H, Hettich RL, Gross SM, Wang Z, Visel A, Yang X.

BMC Genomics. 2018 Aug 6;19(1):588. doi: 10.1186/s12864-018-4964-7. Erratum in: BMC Genomics. 2019 Apr 10;20(1):279.

6.

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D.

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. No abstract available.

7.

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome.

Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Pelletier DA, Weston DJ.

mSystems. 2018 Jan 23;3(1). pii: e00070-17. doi: 10.1128/mSystems.00070-17. eCollection 2018 Jan-Feb.

8.

Multimodal MSI in Conjunction with Broad Coverage Spatially Resolved MS2 Increases Confidence in Both Molecular Identification and Localization.

Veličković D, Chu RK, Carrell AA, Thomas M, Paša-Tolić L, Weston DJ, Anderton CR.

Anal Chem. 2018 Jan 2;90(1):702-707. doi: 10.1021/acs.analchem.7b04319. Epub 2017 Dec 19.

PMID:
29210566
9.

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest.

Cabugao KG, Timm CM, Carrell AA, Childs J, Lu TS, Pelletier DA, Weston DJ, Norby RJ.

Front Plant Sci. 2017 Oct 30;8:1834. doi: 10.3389/fpls.2017.01834. eCollection 2017.

10.

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.

Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ.

New Phytol. 2018 Jan;217(1):16-25. doi: 10.1111/nph.14860. Epub 2017 Oct 27.

11.

Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota.

Warren MJ, Lin X, Gaby JC, Kretz CB, Kolton M, Morton PL, Pett-Ridge J, Weston DJ, Schadt CW, Kostka JE, Glass JB.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e01174-17. doi: 10.1128/AEM.01174-17. Print 2017 Sep 1.

12.

Informing models through empirical relationships between foliar phosphorus, nitrogen and photosynthesis across diverse woody species in tropical forests of Panama.

Norby RJ, Gu L, Haworth IC, Jensen AM, Turner BL, Walker AP, Warren JM, Weston DJ, Xu C, Winter K.

New Phytol. 2017 Sep;215(4):1425-1437. doi: 10.1111/nph.14319. Epub 2016 Nov 21.

13.

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.

Abraham PE, Yin H, Borland AM, Weighill D, Lim SD, De Paoli HC, Engle N, Jones PC, Agh R, Weston DJ, Wullschleger SD, Tschaplinski T, Jacobson D, Cushman JC, Hettich RL, Tuskan GA, Yang X.

Nat Plants. 2016 Nov 21;2:16178. doi: 10.1038/nplants.2016.178.

PMID:
27869799
14.

Root bacterial endophytes alter plant phenotype, but not physiology.

Henning JA, Weston DJ, Pelletier DA, Timm CM, Jawdy SS, Classen AT.

PeerJ. 2016 Nov 1;4:e2606. eCollection 2016.

15.

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants.

Jia Q, Li G, Köllner TG, Fu J, Chen X, Xiong W, Crandall-Stotler BJ, Bowman JL, Weston DJ, Zhang Y, Chen L, Xie Y, Li FW, Rothfels CJ, Larsson A, Graham SW, Stevenson DW, Wong GK, Gershenzon J, Chen F.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12328-12333. Epub 2016 Oct 10.

16.

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.

Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ.

Front Plant Sci. 2016 Apr 26;7:497. doi: 10.3389/fpls.2016.00497. eCollection 2016.

17.

The Sphagnum microbiome: new insights from an ancient plant lineage.

Kostka JE, Weston DJ, Glass JB, Lilleskov EA, Shaw AJ, Turetsky MR.

New Phytol. 2016 Jul;211(1):57-64. doi: 10.1111/nph.13993. Epub 2016 May 13. Review.

18.

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.

Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL.

Front Microbiol. 2016 Apr 18;7:491. doi: 10.3389/fmicb.2016.00491. eCollection 2016.

19.

Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta).

Devos N, Szövényi P, Weston DJ, Rothfels CJ, Johnson MG, Shaw AJ.

New Phytol. 2016 Jul;211(1):300-18. doi: 10.1111/nph.13887. Epub 2016 Feb 22.

20.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.

Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.

Front Microbiol. 2015 Oct 14;6:1118. doi: 10.3389/fmicb.2015.01118. eCollection 2015.

21.

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?

Weston DJ, Rogers A, Tschaplinski TJ, Gunter LE, Jawdy SA, Engle NL, Heady LE, Tuskan GA, Wullschleger SD.

Ecol Evol. 2015 Jul;5(14):2839-50. doi: 10.1002/ece3.1565. Epub 2015 Jun 25.

22.

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.

Yang X, Cushman JC, Borland AM, Edwards EJ, Wullschleger SD, Tuskan GA, Owen NA, Griffiths H, Smith JA, De Paoli HC, Weston DJ, Cottingham R, Hartwell J, Davis SC, Silvera K, Ming R, Schlauch K, Abraham P, Stewart JR, Guo HB, Albion R, Ha J, Lim SD, Wone BW, Yim WC, Garcia T, Mayer JA, Petereit J, Nair SS, Casey E, Hettich RL, Ceusters J, Ranjan P, Palla KJ, Yin H, Reyes-García C, Andrade JL, Freschi L, Beltrán JD, Dever LV, Boxall SF, Waller J, Davies J, Bupphada P, Kadu N, Winter K, Sage RF, Aguilar CN, Schmutz J, Jenkins J, Holtum JA.

New Phytol. 2015 Aug;207(3):491-504. doi: 10.1111/nph.13393. Review.

23.

Quantification of proteins by flow cytometry: Quantification of human hepatic transporter P-gp and OATP1B1 using flow cytometry and mass spectrometry.

Hogg K, Thomas J, Ashford D, Cartwright J, Coldwell R, Weston DJ, Pillmoor J, Surry D, O'Toole P.

Methods. 2015 Jul 1;82:38-46. doi: 10.1016/j.ymeth.2015.03.030. Epub 2015 Apr 24.

PMID:
25916617
24.

Genomics in a changing arctic: critical questions await the molecular ecologist.

Wullschleger SD, Breen AL, Iversen CM, Olson MS, Näsholm T, Ganeteg U, Wallenstein MD, Weston DJ.

Mol Ecol. 2015 May;24(10):2301-9. doi: 10.1111/mec.13166. Epub 2015 Apr 20. Review.

PMID:
25809088
25.

New quantitative approaches reveal the spatial preference of nuclear compartments in mammalian fibroblasts.

Weston DJ, Russell RA, Batty E, Jensen K, Stephens DA, Adams NM, Freemont PS.

J R Soc Interface. 2015 Mar 6;12(104):20140894. doi: 10.1098/rsif.2014.0894.

26.

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus.

Labbé JL, Weston DJ, Dunkirk N, Pelletier DA, Tuskan GA.

Front Plant Sci. 2014 Oct 24;5:579. doi: 10.3389/fpls.2014.00579. eCollection 2014.

27.

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy.

Borland AM, Wullschleger SD, Weston DJ, Hartwell J, Tuskan GA, Yang X, Cushman JC.

Plant Cell Environ. 2015 Sep;38(9):1833-49. doi: 10.1111/pce.12479. Epub 2014 Dec 15. Review.

28.

Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function.

Weston DJ, Timm CM, Walker AP, Gu L, Muchero W, Schmutz J, Shaw AJ, Tuskan GA, Warren JM, Wullschleger SD.

Plant Cell Environ. 2015 Sep;38(9):1737-51. doi: 10.1111/pce.12458. Epub 2014 Dec 7. Review.

29.

Efficient purging of deleterious mutations in plants with haploid selfing.

Szövényi P, Devos N, Weston DJ, Yang X, Hock Z, Shaw JA, Shimizu KK, McDaniel SF, Wagner A.

Genome Biol Evol. 2014 May 14;6(5):1238-52. doi: 10.1093/gbe/evu099.

30.

Reactive metabolite trapping screens and potential pitfalls: bioactivation of a homomorpholine and formation of an unstable thiazolidine adduct.

Lenz EM, Martin S, Schmidt R, Morin PE, Smith R, Weston DJ, Bayrakdarian M.

Chem Res Toxicol. 2014 Jun 16;27(6):968-80. doi: 10.1021/tx5000409. Epub 2014 Jun 5.

PMID:
24855970
31.

Engineering crassulacean acid metabolism to improve water-use efficiency.

Borland AM, Hartwell J, Weston DJ, Schlauch KA, Tschaplinski TJ, Tuskan GA, Yang X, Cushman JC.

Trends Plant Sci. 2014 May;19(5):327-38. doi: 10.1016/j.tplants.2014.01.006. Epub 2014 Feb 19. Review.

32.

Direct determination of urinary creatinine by reactive-thermal desorption-extractive electrospray-ion mobility-tandem mass spectrometry.

Devenport NA, Blenkhorn DJ, Weston DJ, Reynolds JC, Creaser CS.

Anal Chem. 2014 Jan 7;86(1):357-61. doi: 10.1021/ac403133t. Epub 2013 Dec 19.

33.

Extending the Arabidopsis flowering paradigm to a mass flowering phenomenon in the tropics.

Weston DJ, Wullschleger SD, Tuskan GA.

Mol Ecol. 2013 Sep;22(18):4603-5.

PMID:
24167825
34.

Direct detection of a sulfonate ester genotoxic impurity by atmospheric-pressure thermal desorption-extractive electrospray-mass spectrometry.

Devenport NA, Sealey LC, Alruways FH, Weston DJ, Reynolds JC, Creaser CS.

Anal Chem. 2013 Jul 2;85(13):6224-7. doi: 10.1021/ac401054n. Epub 2013 Jun 21.

35.

A dual role of strigolactones in phosphate acquisition and utilization in plants.

Czarnecki O, Yang J, Weston DJ, Tuskan GA, Chen JG.

Int J Mol Sci. 2013 Apr 9;14(4):7681-701. doi: 10.3390/ijms14047681. Review.

36.

Enhanced performance in the determination of ibuprofen 1-β-O-acyl glucuronide in urine by combining high field asymmetric waveform ion mobility spectrometry with liquid chromatography-time-of-flight mass spectrometry.

Smith RW, Toutoungi DE, Reynolds JC, Bristow AW, Ray A, Sage A, Wilson ID, Weston DJ, Boyle B, Creaser CS.

J Chromatogr A. 2013 Feb 22;1278:76-81. doi: 10.1016/j.chroma.2012.12.065. Epub 2013 Jan 8.

PMID:
23336944
37.

Evolutionary analyses of non-family genes in plants.

Ye CY, Li T, Yin H, Weston DJ, Tuskan GA, Tschaplinski TJ, Yang X.

Plant J. 2013 Mar;73(5):788-97. doi: 10.1111/tpj.12073. Epub 2013 Jan 22.

38.

Revisiting the sequencing of the first tree genome: Populus trichocarpa.

Wullschleger SD, Weston DJ, DiFazio SP, Tuskan GA.

Tree Physiol. 2013 Apr;33(4):357-64. doi: 10.1093/treephys/tps081. Epub 2012 Oct 25.

PMID:
23100257
39.

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes.

Karve AA, Jawdy SS, Gunter LE, Allen SM, Yang X, Tuskan GA, Wullschleger SD, Weston DJ.

New Phytol. 2012 Nov;196(3):726-37. doi: 10.1111/j.1469-8137.2012.04288.x. Epub 2012 Sep 3.

40.

Direct extraction of urinary analytes from undeveloped reversed-phase thin layer chromatography plates using a solvent gradient combined with on-line electrospray ionisation ion mobility-mass spectrometry.

Devenport NA, Reynolds JC, Weston DJ, Wilson ID, Creaser CS.

Analyst. 2012 Aug 7;137(15):3510-3. doi: 10.1039/c2an35495k. Epub 2012 Jun 22.

PMID:
22724122
41.

Analysis of spatial point patterns in nuclear biology.

Weston DJ, Adams NM, Russell RA, Stephens DA, Freemont PS.

PLoS One. 2012;7(5):e36841. doi: 10.1371/journal.pone.0036841. Epub 2012 May 16.

42.

Modeling the molecular and climatic controls on flowering.

Wullschleger SD, Weston DJ.

New Phytol. 2012 May;194(3):599-601. doi: 10.1111/j.1469-8137.2012.04142.x. No abstract available.

43.

Enhanced analyte detection using in-source fragmentation of field asymmetric waveform ion mobility spectrometry-selected ions in combination with time-of-flight mass spectrometry.

Brown LJ, Smith RW, Toutoungi DE, Reynolds JC, Bristow AW, Ray A, Sage A, Wilson ID, Weston DJ, Boyle B, Creaser CS.

Anal Chem. 2012 May 1;84(9):4095-103. doi: 10.1021/ac300212r. Epub 2012 Apr 19.

PMID:
22455620
44.
45.

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA.

Mol Plant Microbe Interact. 2012 Jun;25(6):765-78. doi: 10.1094/MPMI-09-11-0253.

46.

From systems biology to photosynthesis and whole-plant physiology: a conceptual model for integrating multi-scale networks.

Weston DJ, Hanson PJ, Norby RJ, Tuskan GA, Wullschleger SD.

Plant Signal Behav. 2012 Feb;7(2):260-2. doi: 10.4161/psb.18802. Epub 2012 Feb 1.

47.

Timing and magnitude of C partitioning through a young loblolly pine (Pinus taeda L.) stand using 13C labeling and shade treatments.

Warren JM, Iversen CM, Garten CT Jr, Norby RJ, Childs J, Brice D, Evans RM, Gu L, Thornton P, Weston DJ.

Tree Physiol. 2012 Jun;32(6):799-813. doi: 10.1093/treephys/tpr129. Epub 2011 Dec 30.

PMID:
22210530
48.

Determination of free desmosine and isodesmosine as urinary biomarkers of lung disorder using ultra performance liquid chromatography-ion mobility-mass spectrometry.

Devenport NA, Reynolds JC, Parkash V, Cook J, Weston DJ, Creaser CS.

J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Dec 15;879(32):3797-801. doi: 10.1016/j.jchromb.2011.10.016. Epub 2011 Oct 22.

PMID:
22088351
49.
50.

Accurate-mass instrumentation should not always be the first-and-only choice for MS in the drug metabolism environment.

Weston DJ, Beattie IG.

Bioanalysis. 2011 Aug;3(16):1795-8. doi: 10.4155/bio.11.169. No abstract available.

PMID:
21877886

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