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Items: 1 to 50 of 233

1.

Searching for the neurite density with diffusion MRI: Challenges for biophysical modeling.

Lampinen B, Szczepankiewicz F, Novén M, van Westen D, Hansson O, Englund E, Mårtensson J, Westin CF, Nilsson M.

Hum Brain Mapp. 2019 Feb 25. doi: 10.1002/hbm.24542. [Epub ahead of print]

PMID:
30802367
2.

Limits to anatomical accuracy of diffusion tractography using modern approaches.

Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez EJ, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA.

Neuroimage. 2019 Jan 15;185:1-11. doi: 10.1016/j.neuroimage.2018.10.029. Epub 2018 Oct 11.

PMID:
30317017
3.

Inguinal hernia with ureter in patient with single kidney.

de Carvalho Neiva R, Westin CEG, de Arruda JGF, de Arruda PFF, Gatti M, Bogdan AP, Antoniassi T, Spessoto LCF, Facio Junior FN.

AME Case Rep. 2018 Feb 9;2:5. doi: 10.21037/acr.2018.01.05. eCollection 2018.

4.

Striato-nigro-striatal tract dispersion abnormalities in patients with chronic schizophrenia.

Rivas-Grajales AM, Savadjiev P, Kubicki M, Nestor PG, Niznikiewicz M, McCarley RW, Westin CF, Shenton ME, Levitt JJ.

Brain Imaging Behav. 2018 Aug 14. doi: 10.1007/s11682-018-9934-9. [Epub ahead of print]

PMID:
30109597
5.

MRI Findings After MRI-Guided Focal Laser Ablation of Prostate Cancer.

Westin C, Chatterjee A, Ku E, Yousuf A, Wang S, Thomas S, Fan X, Eggener S, Karczmar G, Oto A.

AJR Am J Roentgenol. 2018 Sep;211(3):595-604. doi: 10.2214/AJR.17.19201. Epub 2018 Jul 11.

PMID:
29995499
6.

Genetic load determines atrophy in hand cortico-striatal pathways in presymptomatic Huntington's disease.

Hong Y, O'Donnell LJ, Savadjiev P, Zhang F, Wassermann D, Pasternak O, Johnson H, Paulsen J, Vonsattel JP, Makris N, Westin CF, Rathi Y.

Hum Brain Mapp. 2018 Oct;39(10):3871-3883. doi: 10.1002/hbm.24217. Epub 2018 May 24.

PMID:
29797744
7.

A comparison of three fiber tract delineation methods and their impact on white matter analysis.

Sydnor VJ, Rivas-Grajales AM, Lyall AE, Zhang F, Bouix S, Karmacharya S, Shenton ME, Westin CF, Makris N, Wassermann D, O'Donnell LJ, Kubicki M.

Neuroimage. 2018 Sep;178:318-331. doi: 10.1016/j.neuroimage.2018.05.044. Epub 2018 May 19.

PMID:
29787865
8.

Lifespan Trajectories of White Matter Changes in Rhesus Monkeys.

Kubicki M, Baxi M, Pasternak O, Tang Y, Karmacharya S, Chunga N, Lyall AE, Rathi Y, Eckbo R, Bouix S, Mortazavi F, Papadimitriou G, Shenton ME, Westin CF, Killiany R, Makris N, Rosene DL.

Cereb Cortex. 2019 Apr 1;29(4):1584-1593. doi: 10.1093/cercor/bhy056.

PMID:
29701751
9.

Influence of the size and curvedness of neural projections on the orientationally averaged diffusion MR signal.

Özarslan E, Yolcu C, Herberthson M, Knutsson H, Westin CF.

Front Phys. 2018;6. pii: 17. doi: 10.3389/fphy.2018.00017. Epub 2018 Mar 2.

10.

Utilizing Mutual Information Analysis to Explore the Relationship Between Gray and White Matter Structural Pathologies in Schizophrenia.

Lyall AE, Savadjiev P, Del Re EC, Seitz J, O'Donnell LJ, Westin CF, Mesholam-Gately RI, Petryshen T, Wojcik JD, Nestor P, Niznikiewicz M, Goldstein J, Seidman LJ, McCarley RW, Shenton ME, Kubicki M.

Schizophr Bull. 2019 Mar 7;45(2):386-395. doi: 10.1093/schbul/sby028.

PMID:
29618096
11.

Cumulant expansions for measuring water exchange using diffusion MRI.

Ning L, Nilsson M, Lasič S, Westin CF, Rathi Y.

J Chem Phys. 2018 Feb 21;148(7):074109. doi: 10.1063/1.5014044.

12.

The challenge of mapping the human connectome based on diffusion tractography.

Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, Renjie H, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, Requejo FS, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M.

Nat Commun. 2017 Nov 7;8(1):1349. doi: 10.1038/s41467-017-01285-x.

13.

SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research.

Norton I, Essayed W, Zhang F, Pujol S, Yarmarkovich A, Golby AJ, Kindlmann G, Wassermann D, Estepar RSJ, Rathi Y, Pieper S, Kikinis R, Johnson HJ, Westin CF, O'Donnell LJ.

Cancer Res. 2017 Nov 1;77(21):e101-e103. doi: 10.1158/0008-5472.CAN-17-0332. Erratum in: Cancer Res. 2018 May 1;78(9):2445.

14.

Is hypogonadism the cause of penile self-amputation in a patient with prior testes self-mutilation?

Cavalcante VM, Westin CG, Fantin JP, Gonçalves Filho J, Gatti M, Bogdan AP, Arruda JG, Arruda PF, Spessoto LC, Antoniassi T, Fácio FN Jr.

Urologia. 2018 May;85(2):73-75. doi: 10.5301/uj.5000265. Epub 2017 May 9.

PMID:
28885657
15.

Differentiation of dental pulp stem cells into chondrocytes upon culture on porous chitosan-xanthan scaffolds in the presence of kartogenin.

Westin CB, Trinca RB, Zuliani C, Coimbra IB, Moraes ÂM.

Mater Sci Eng C Mater Biol Appl. 2017 Nov 1;80:594-602. doi: 10.1016/j.msec.2017.07.005. Epub 2017 Jul 8.

PMID:
28866206
16.

Liquid crystal phantom for validation of microscopic diffusion anisotropy measurements on clinical MRI systems.

Nilsson M, Larsson J, Lundberg D, Szczepankiewicz F, Witzel T, Westin CF, Bryskhe K, Topgaard D.

Magn Reson Med. 2018 Mar;79(3):1817-1828. doi: 10.1002/mrm.26814. Epub 2017 Jul 7.

17.

Quantifying the brain's sheet structure with normalized convolution.

Tax CMW, Westin CF, Dela Haije T, Fuster A, Viergever MA, Calabrese E, Florack L, Leemans A.

Med Image Anal. 2017 Jul;39:162-177. doi: 10.1016/j.media.2017.03.007. Epub 2017 Apr 4.

18.

Separating blood and water: Perfusion and free water elimination from diffusion MRI in the human brain.

Rydhög AS, Szczepankiewicz F, Wirestam R, Ahlgren A, Westin CF, Knutsson L, Pasternak O.

Neuroimage. 2017 Aug 1;156:423-434. doi: 10.1016/j.neuroimage.2017.04.023. Epub 2017 Apr 13.

19.

Dynamics of local magnetization in the eigenbasis of the Bloch-Torrey operator.

Herberthson M, Özarslan E, Knutsson H, Westin CF.

J Chem Phys. 2017 Mar 28;146(12):124201. doi: 10.1063/1.4978621.

20.

Resolution limit of cylinder diameter estimation by diffusion MRI: The impact of gradient waveform and orientation dispersion.

Nilsson M, Lasič S, Drobnjak I, Topgaard D, Westin CF.

NMR Biomed. 2017 Jul;30(7). doi: 10.1002/nbm.3711. Epub 2017 Mar 20.

21.

Co-clinical quantitative tumor volume imaging in ALK-rearranged NSCLC treated with crizotinib.

Nishino M, Sacher AG, Gandhi L, Chen Z, Akbay E, Fedorov A, Westin CF, Hatabu H, Johnson BE, Hammerman P, Wong KK.

Eur J Radiol. 2017 Mar;88:15-20. doi: 10.1016/j.ejrad.2016.12.028. Epub 2016 Dec 26.

22.

Multi-site harmonization of diffusion MRI data in a registration framework.

Mirzaalian H, Ning L, Savadjiev P, Pasternak O, Bouix S, Michailovich O, Karmacharya S, Grant G, Marx CE, Morey RA, Flashman LA, George MS, McAllister TW, Andaluz N, Shutter L, Coimbra R, Zafonte RD, Coleman MJ, Kubicki M, Westin CF, Stein MB, Shenton ME, Rathi Y.

Brain Imaging Behav. 2018 Feb;12(1):284-295. doi: 10.1007/s11682-016-9670-y.

PMID:
28176263
23.

Longitudinal diffusion changes in prodromal and early HD: Evidence of white-matter tract deterioration.

Shaffer JJ, Ghayoor A, Long JD, Kim RE, Lourens S, O'Donnell LJ, Westin CF, Rathi Y, Magnotta V, Paulsen JS, Johnson HJ.

Hum Brain Mapp. 2017 Mar;38(3):1460-1477. doi: 10.1002/hbm.23465. Epub 2017 Jan 3.

24.

Effective potential for magnetic resonance measurements of restricted diffusion.

Özarslan E, Yolcu C, Herberthson M, Westin CF, Knutsson H.

Front Phys. 2017;5. pii: 68. doi: 10.3389/fphy.2017.00068. Epub 2017 Dec 19.

25.

Automated white matter fiber tract identification in patients with brain tumors.

O'Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM 3rd, Rathi Y, Westin CF, Golby AJ.

Neuroimage Clin. 2016 Nov 25;13:138-153. eCollection 2017.

26.

Harmonizing Diffusion MRI Data Across Multiple Sites and Scanners.

Mirzaalian H, de Pierrefeu A, Savadjiev P, Pasternak O, Bouix S, Kubicki M, Westin CF, Shenton ME, Rathi Y.

Med Image Comput Comput Assist Interv. 2015 Oct;9349:12-19. Epub 2015 Nov 18.

27.

Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion.

Ning L, Özarslan E, Westin CF, Rathi Y.

Neuroimage. 2017 Feb 1;146:452-473. doi: 10.1016/j.neuroimage.2016.09.057. Epub 2016 Oct 14.

28.

New insights about time-varying diffusivity and its estimation from diffusion MRI.

Ning L, Setsompop K, Westin CF, Rathi Y.

Magn Reson Med. 2017 Aug;78(2):763-774. doi: 10.1002/mrm.26403. Epub 2016 Sep 9.

29.

Corrigendum to "A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging".

Ning L, Setsompop K, Michailovich O, Makris N, Shenton ME, Westin CF, Rathi Y.

Neuroimage. 2016 Nov 15;142:696. doi: 10.1016/j.neuroimage.2016.07.053. Epub 2016 Aug 1. No abstract available.

PMID:
27490271
30.

MRI evaluation of benign prostatic hyperplasia: Correlation with international prostate symptom score.

Guneyli S, Ward E, Peng Y, Nehal Yousuf A, Trilisky I, Westin C, Antic T, Oto A.

J Magn Reson Imaging. 2017 Mar;45(3):917-925. doi: 10.1002/jmri.25418. Epub 2016 Aug 3.

PMID:
27487205
31.

Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI.

Tax CMW, Dela Haije T, Fuster A, Westin CF, Viergever MA, Florack L, Leemans A.

Neuroimage. 2016 Nov 15;142:260-279. doi: 10.1016/j.neuroimage.2016.07.042. Epub 2016 Jul 25.

32.

The link between diffusion MRI and tumor heterogeneity: Mapping cell eccentricity and density by diffusional variance decomposition (DIVIDE).

Szczepankiewicz F, van Westen D, Englund E, Westin CF, Ståhlberg F, Lätt J, Sundgren PC, Nilsson M.

Neuroimage. 2016 Nov 15;142:522-532. doi: 10.1016/j.neuroimage.2016.07.038. Epub 2016 Jul 20.

33.

NMR signal for particles diffusing under potentials: From path integrals and numerical methods to a model of diffusion anisotropy.

Yolcu C, Memiç M, Şimşek K, Westin CF, Özarslan E.

Phys Rev E. 2016 May;93(5):052602. doi: 10.1103/PhysRevE.93.052602. Epub 2016 May 5.

PMID:
27300946
34.

Comparison of the properties of membranes produced with alginate and chitosan from mushroom and from shrimp.

Bierhalz AC, Westin CB, Moraes ÂM.

Int J Biol Macromol. 2016 Oct;91:496-504. doi: 10.1016/j.ijbiomac.2016.05.095. Epub 2016 May 27.

35.

Characterizing magnetic resonance signal decay due to Gaussian diffusion: the path integral approach and a convenient computational method.

Özarslan E, Westin CF, Mareci TH.

Concepts Magn Reson Part A Bridg Educ Res. 2015 Jul;44(4):203-213. Epub 2015 Dec 21.

36.

Inter-site and inter-scanner diffusion MRI data harmonization.

Mirzaalian H, Ning L, Savadjiev P, Pasternak O, Bouix S, Michailovich O, Grant G, Marx CE, Morey RA, Flashman LA, George MS, McAllister TW, Andaluz N, Shutter L, Coimbra R, Zafonte RD, Coleman MJ, Kubicki M, Westin CF, Stein MB, Shenton ME, Rathi Y.

Neuroimage. 2016 Jul 15;135:311-23. doi: 10.1016/j.neuroimage.2016.04.041. Epub 2016 Apr 30.

37.

Estimation of Bounded and Unbounded Trajectories in Diffusion MRI.

Ning L, Westin CF, Rathi Y.

Front Neurosci. 2016 Mar 31;10:129. doi: 10.3389/fnins.2016.00129. eCollection 2016.

38.

Q-space trajectory imaging for multidimensional diffusion MRI of the human brain.

Westin CF, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, Topgaard D, Nilsson M.

Neuroimage. 2016 Jul 15;135:345-62. doi: 10.1016/j.neuroimage.2016.02.039. Epub 2016 Feb 23.

39.

The white matter query language: a novel approach for describing human white matter anatomy.

Wassermann D, Makris N, Rathi Y, Shenton M, Kikinis R, Kubicki M, Westin CF.

Brain Struct Funct. 2016 Dec;221(9):4705-4721. Epub 2016 Jan 11.

40.

Constrained optimization of gradient waveforms for generalized diffusion encoding.

Sjölund J, Szczepankiewicz F, Nilsson M, Topgaard D, Westin CF, Knutsson H.

J Magn Reson. 2015 Dec;261:157-68. doi: 10.1016/j.jmr.2015.10.012. Epub 2015 Oct 31.

41.

Effect of Bronsted Acids and Bases, and Lewis Acid (Sn(2+)) on the Regiochemistry of the Reaction of Amines with Trifluoromethyl-β-diketones: Reaction of 3-Aminopyrrole to Selectively Produce Regioisomeric 1H-Pyrrolo[3,2-b]pyridines.

De Rosa M, Arnold D, Hartline D, Truong L, Verner R, Wang T, Westin C.

J Org Chem. 2015 Dec 18;80(24):12288-99. doi: 10.1021/acs.joc.5b02192. Epub 2015 Dec 7.

PMID:
26575797
42.

A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.

Ning L, Setsompop K, Michailovich O, Makris N, Shenton ME, Westin CF, Rathi Y.

Neuroimage. 2016 Jan 15;125:386-400. doi: 10.1016/j.neuroimage.2015.10.061. Epub 2015 Oct 23. Erratum in: Neuroimage. 2016 Nov 15;142:696.

43.

Sparse deconvolution of higher order tensor for fiber orientation distribution estimation.

Feng Y, Wu Y, Rathi Y, Westin CF.

Artif Intell Med. 2015 Nov;65(3):229-38. doi: 10.1016/j.artmed.2015.09.004. Epub 2015 Sep 15.

PMID:
26428956
44.

Conventions and nomenclature for double diffusion encoding NMR and MRI.

Shemesh N, Jespersen SN, Alexander DC, Cohen Y, Drobnjak I, Dyrby TB, Finsterbusch J, Koch MA, Kuder T, Laun F, Lawrenz M, Lundell H, Mitra PP, Nilsson M, Özarslan E, Topgaard D, Westin CF.

Magn Reson Med. 2016 Jan;75(1):82-7. doi: 10.1002/mrm.25901. Epub 2015 Sep 29. Review.

PMID:
26418050
45.

Abnormal white matter connections between medial frontal regions predict symptoms in patients with first episode schizophrenia.

Ohtani T, Bouix S, Lyall AE, Hosokawa T, Saito Y, Melonakos E, Westin CF, Seidman LJ, Goldstein J, Mesholam-Gately R, Petryshen T, Wojcik J, Kubicki M.

Cortex. 2015 Oct;71:264-76. doi: 10.1016/j.cortex.2015.05.028. Epub 2015 Jun 6.

46.

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery.

Pujol S, Wells W, Pierpaoli C, Brun C, Gee J, Cheng G, Vemuri B, Commowick O, Prima S, Stamm A, Goubran M, Khan A, Peters T, Neher P, Maier-Hein KH, Shi Y, Tristan-Vega A, Veni G, Whitaker R, Styner M, Westin CF, Gouttard S, Norton I, Chauvin L, Mamata H, Gerig G, Nabavi A, Golby A, Kikinis R.

J Neuroimaging. 2015 Nov-Dec;25(6):875-82. doi: 10.1111/jon.12283. Epub 2015 Aug 11.

47.

A Compressed-Sensing Approach for Super-Resolution Reconstruction of Diffusion MRI.

Ning L, Setsompop K, Michailovich O, Makris N, Westin CF, Rathi Y.

Inf Process Med Imaging. 2015;24:57-68.

48.

Preface. 24th International Conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015. Proceedings..

Ourselin S, Alexander DC, Westin CF, Cardoso MJ.

Inf Process Med Imaging. 2015;24:V-VII. No abstract available.

PMID:
26221662
49.

Estimating diffusion propagator and its moments using directional radial basis functions.

Ning L, Westin CF, Rathi Y.

IEEE Trans Med Imaging. 2015 Oct;34(10):2058-78. doi: 10.1109/TMI.2015.2418674. Epub 2015 Mar 31.

50.

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