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Items: 1 to 50 of 175

1.

Cytosine-5 RNA methylation links protein synthesis to cell metabolism.

Gkatza NA, Castro C, Harvey RF, Heiß M, Popis MC, Blanco S, Bornelöv S, Sajini AA, Gleeson JG, Griffin JL, West JA, Kellner S, Willis AE, Dietmann S, Frye M.

PLoS Biol. 2019 Jun 14;17(6):e3000297. doi: 10.1371/journal.pbio.3000297. eCollection 2019 Jun.

2.

A randomized 3-way crossover study indicates that high-protein feeding induces de novo lipogenesis in healthy humans.

Charidemou E, Ashmore T, Li X, McNally BD, West JA, Liggi S, Harvey M, Orford E, Griffin JL.

JCI Insight. 2019 May 30;4(12). pii: 124819. doi: 10.1172/jci.insight.124819. eCollection 2019 Jun 20.

3.

Clinical outcomes and patient satisfaction after total knee arthroplasty: a follow-up of the first 50 cases by a single surgeon.

West JA, Scudday T, Anderson S, Amin NH.

J Int Med Res. 2019 Apr;47(4):1667-1676. doi: 10.1177/0300060519832430. Epub 2019 Mar 12.

4.

Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex.

Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR.

Neuron. 2019 Apr 3;102(1):143-158.e7. doi: 10.1016/j.neuron.2019.01.027. Epub 2019 Feb 12.

PMID:
30770253
5.

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.

Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR.

Cell. 2019 Feb 7;176(4):743-756.e17. doi: 10.1016/j.cell.2019.01.017.

PMID:
30735633
6.

Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development.

Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS.

Nat Neurosci. 2018 Dec;21(12):1784-1792. doi: 10.1038/s41593-018-0265-3. Epub 2018 Nov 19.

7.

A dietary pattern derived using B-vitamins and its relationship with vascular markers over the life course.

Maddock J, Ambrosini GL, Griffin JL, West JA, Wong A, Hardy R, Ray S.

Clin Nutr. 2019 Jun;38(3):1464-1473. doi: 10.1016/j.clnu.2018.06.969. Epub 2018 Jun 28.

8.

Cyclooxygenase-2, Asymmetric Dimethylarginine, and the Cardiovascular Hazard From Nonsteroidal Anti-Inflammatory Drugs.

Ricciotti E, Castro C, Tang SY, Briggs WTE, West JA, Malik D, Rhoades SD, Meng H, Li X, Lahens NF, Sparks JA, Karlson EW, Weljie AM, Griffin JL, FitzGerald GA.

Circulation. 2018 Nov 20;138(21):2367-2378. doi: 10.1161/CIRCULATIONAHA.118.033540.

PMID:
29930022
9.

Three gene phylogeny of the Thoreales (Rhodophyta) reveals high species diversity.

Johnston ET, Dixon KR, West JA, Buhari N, Vis ML.

J Phycol. 2018 Apr;54(2):159-170. doi: 10.1111/jpy.12618. Epub 2018 Feb 13.

PMID:
29344959
10.

Nerve Blocks in the Geriatric Patient With Hip Fracture: A Review of the Current Literature and Relevant Neuroanatomy.

Amin NH, West JA, Farmer T, Basmajian HG.

Geriatr Orthop Surg Rehabil. 2017 Dec;8(4):268-275. doi: 10.1177/2151458517734046. Epub 2017 Oct 13. Review.

11.

Nox4 reprograms cardiac substrate metabolism via protein O-GlcNAcylation to enhance stress adaptation.

Nabeebaccus AA, Zoccarato A, Hafstad AD, Santos CX, Aasum E, Brewer AC, Zhang M, Beretta M, Yin X, West JA, Schröder K, Griffin JL, Eykyn TR, Abel ED, Mayr M, Shah AM.

JCI Insight. 2017 Dec 21;2(24). pii: 96184. doi: 10.1172/jci.insight.96184.

12.

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR.

Science. 2017 Dec 8;358(6368):1318-1323. doi: 10.1126/science.aap8809.

13.

In-office arthroscopy for the evaluation of chronic knee pain: A case report.

West JA, Amin NH.

SAGE Open Med Case Rep. 2017 Nov 14;5:2050313X17740992. doi: 10.1177/2050313X17740992. eCollection 2017.

14.

Kaposi's Sarcoma-Associated Herpesvirus Increases PD-L1 and Proinflammatory Cytokine Expression in Human Monocytes.

Host KM, Jacobs SR, West JA, Zhang Z, Costantini LM, Stopford CM, Dittmer DP, Damania B.

MBio. 2017 Oct 10;8(5). pii: e00917-17. doi: 10.1128/mBio.00917-17.

15.

Marginal distribution and high heterozygosity of asexual Caloglossa vieillardii (Delesseriaceae, Rhodophyta) along the Australian coasts.

Kamiya M, Saba E, West JA.

J Phycol. 2017 Dec;53(6):1283-1293. doi: 10.1111/jpy.12580. Epub 2017 Sep 27.

PMID:
28833125
16.

Analysis of chloroplast genomes and a supermatrix inform reclassification of the Rhodomelaceae (Rhodophyta).

Díaz-Tapia P, Maggs CA, West JA, Verbruggen H.

J Phycol. 2017 Oct;53(5):920-937. doi: 10.1111/jpy.12553. Epub 2017 Jul 11. Erratum in: J Phycol. 2018 Dec;54(6):765-766.

PMID:
28561261
17.

Metabolic basis to Sherpa altitude adaptation.

Horscroft JA, Kotwica AO, Laner V, West JA, Hennis PJ, Levett DZH, Howard DJ, Fernandez BO, Burgess SL, Ament Z, Gilbert-Kawai ET, Vercueil A, Landis BD, Mitchell K, Mythen MG, Branco C, Johnson RS, Feelisch M, Montgomery HE, Griffin JL, Grocott MPW, Gnaiger E, Martin DS, Murray AJ.

Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):6382-6387. doi: 10.1073/pnas.1700527114. Epub 2017 May 22.

18.

Inhibition of sarcolemmal FAT/CD36 by sulfo-N-succinimidyl oleate rapidly corrects metabolism and restores function in the diabetic heart following hypoxia/reoxygenation.

Mansor LS, Sousa Fialho MDL, Yea G, Coumans WA, West JA, Kerr M, Carr CA, Luiken JJFP, Glatz JFC, Evans RD, Griffin JL, Tyler DJ, Clarke K, Heather LC.

Cardiovasc Res. 2017 Jun 1;113(7):737-748. doi: 10.1093/cvr/cvx045.

19.

Long-Term Engraftment and Fetal Globin Induction upon BCL11A Gene Editing in Bone-Marrow-Derived CD34+ Hematopoietic Stem and Progenitor Cells.

Chang KH, Smith SE, Sullivan T, Chen K, Zhou Q, West JA, Liu M, Liu Y, Vieira BF, Sun C, Hong VP, Zhang M, Yang X, Reik A, Urnov FD, Rebar EJ, Holmes MC, Danos O, Jiang H, Tan S.

Mol Ther Methods Clin Dev. 2017 Jan 11;4:137-148. doi: 10.1016/j.omtm.2016.12.009. eCollection 2017 Mar 17.

20.

Odd Chain Fatty Acids; New Insights of the Relationship Between the Gut Microbiota, Dietary Intake, Biosynthesis and Glucose Intolerance.

Jenkins BJ, Seyssel K, Chiu S, Pan PH, Lin SY, Stanley E, Ament Z, West JA, Summerhill K, Griffin JL, Vetter W, Autio KJ, Hiltunen K, Hazebrouck S, Stepankova R, Chen CJ, Alligier M, Laville M, Moore M, Kraft G, Cherrington A, King S, Krauss RM, de Schryver E, Van Veldhoven PP, Ronis M, Koulman A.

Sci Rep. 2017 Mar 23;7:44845. doi: 10.1038/srep44845.

21.

Corrigendum: Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis.

Ramalingam N, Fowler B, Szpankowski L, Leyrat AA, Hukari K, Maung MT, Yorza W, Norris M, Cesar C, Shuga J, Gonzales ML, Sanada CD, Wang X, Yeung R, Hwang W, Axsom J, Devaraju NS, Angeles ND, Greene C, Zhou MF, Ong ES, Poh CC, Lam M, Choi H, Htoo Z, Lee L, Chin CS, Shen ZW, Lu CT, Holcomb I, Ooi A, Stolarczyk C, Shuga T, Livak KJ, Larsen C, Unger M, West JA.

Front Bioeng Biotechnol. 2017 Mar 14;5:11. doi: 10.3389/fbioe.2017.00011. eCollection 2017.

22.

Molecular phylogeny and taxonomic revision of the genus Wittrockiella (Pithophoraceae, Cladophorales), including the descriptions of W. australis sp. nov. and W. zosterae sp. nov.

Boedeker C, O'Kelly CJ, West JA, Hanyuda T, Neale A, Wakana I, Wilcox MD, Karsten U, Zuccarello GC.

J Phycol. 2017 Jun;53(3):522-540. doi: 10.1111/jpy.12530. Epub 2017 Apr 4.

PMID:
28295311
23.

Integration of metabolomics, lipidomics and clinical data using a machine learning method.

Acharjee A, Ament Z, West JA, Stanley E, Griffin JL.

BMC Bioinformatics. 2016 Nov 22;17(Suppl 15):440. doi: 10.1186/s12859-016-1292-2.

24.

Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis.

Ramalingam N, Fowler B, Szpankowski L, Leyrat AA, Hukari K, Maung MT, Yorza W, Norris M, Cesar C, Shuga J, Gonzales ML, Sanada CD, Wang X, Yeung R, Hwang W, Axsom J, Devaraju NS, Angeles ND, Greene C, Zhou MF, Ong ES, Poh CC, Lam M, Choi H, Htoo Z, Lee L, Chin CS, Shen ZW, Lu CT, Holcomb I, Ooi A, Stolarczyk C, Shuga T, Livak KJ, Larsen C, Unger M, West JA.

Front Bioeng Biotechnol. 2016 Sep 21;4:70. eCollection 2016. Erratum in: Front Bioeng Biotechnol. 2017 Mar 14;5:11.

25.

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization.

West JA, Mito M, Kurosaka S, Takumi T, Tanegashima C, Chujo T, Yanaka K, Kingston RE, Hirose T, Bond C, Fox A, Nakagawa S.

J Cell Biol. 2016 Sep 26;214(7):817-30. doi: 10.1083/jcb.201601071. Epub 2016 Sep 19.

26.

Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants.

Lee J, Cho CH, Park SI, Choi JW, Song HS, West JA, Bhattacharya D, Yoon HS.

BMC Biol. 2016 Sep 2;14:75. doi: 10.1186/s12915-016-0299-5.

27.

Metabolomics dataset of PPAR-pan treated rat liver.

Ament Z, West JA, Stanley E, Li X, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL.

Data Brief. 2016 May 10;8:196-202. doi: 10.1016/j.dib.2016.05.002. eCollection 2016 Sep.

28.

Rhodenigma contortum, an obscure new genus and species of Rhodogorgonales (Rhodophyta) from Western Australia.

West JA, Zuccarello GC, de Goër SL, Stavrias LA, Verbruggen H.

J Phycol. 2016 Jun;52(3):397-403. doi: 10.1111/jpy.12402. Epub 2016 Apr 14.

PMID:
27273532
29.

A targeted metabolomics assay for cardiac metabolism and demonstration using a mouse model of dilated cardiomyopathy.

West JA, Beqqali A, Ament Z, Elliott P, Pinto YM, Arbustini E, Griffin JL.

Metabolomics. 2016;12:59. Epub 2016 Mar 7.

30.

Nitrate enhances skeletal muscle fatty acid oxidation via a nitric oxide-cGMP-PPAR-mediated mechanism.

Ashmore T, Roberts LD, Morash AJ, Kotwica AO, Finnerty J, West JA, Murfitt SA, Fernandez BO, Branco C, Cowburn AS, Clarke K, Johnson RS, Feelisch M, Griffin JL, Murray AJ.

BMC Biol. 2015 Dec 22;13:110. doi: 10.1186/s12915-015-0221-6.

31.

PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling.

Ament Z, West JA, Stanley E, Ashmore T, Roberts LD, Wright J, Nicholls AW, Griffin JL.

Free Radic Biol Med. 2016 Jun;95:357-68. doi: 10.1016/j.freeradbiomed.2015.11.033. Epub 2015 Nov 30.

32.
33.

Clonal Dynamics In Vivo of Virus Integration Sites of T Cells Expressing a Safety Switch.

Chang EC, Liu H, West JA, Zhou X, Dakhova O, Wheeler DA, Heslop HE, Brenner MK, Dotti G.

Mol Ther. 2016 Apr;24(4):736-45. doi: 10.1038/mt.2015.217. Epub 2015 Dec 7.

34.

A comprehensive study of sensorimotor cortex excitability in chronic cocaine users: Integrating TMS and functional MRI data.

Hanlon CA, DeVries W, Dowdle LT, West JA, Siekman B, Li X, George MS.

Drug Alcohol Depend. 2015 Dec 1;157:28-35. doi: 10.1016/j.drugalcdep.2015.07.1196. Epub 2015 Sep 26.

35.

Molecular identity of human outer radial glia during cortical development.

Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR.

Cell. 2015 Sep 24;163(1):55-67. doi: 10.1016/j.cell.2015.09.004.

36.

Kaposi's Sarcoma-Associated Herpesvirus Viral Interferon Regulatory Factor 1 Interacts with a Member of the Interferon-Stimulated Gene 15 Pathway.

Jacobs SR, Stopford CM, West JA, Bennett CL, Giffin L, Damania B.

J Virol. 2015 Nov;89(22):11572-83. doi: 10.1128/JVI.01482-15. Epub 2015 Sep 9.

37.

Mechanistic insights revealed by lipid profiling in monogenic insulin resistance syndromes.

Eiden M, Koulman A, Hatunic M, West JA, Murfitt S, Osei M, Adams C, Wang X, Chu Y, Marney L, Roberts LD, O'Rahilly S, Semple RK, Savage DB, Griffin JL.

Genome Med. 2015 Jun 28;7:63. doi: 10.1186/s13073-015-0179-6. eCollection 2015.

38.

Modulation of the cGAS-STING DNA sensing pathway by gammaherpesviruses.

Ma Z, Jacobs SR, West JA, Stopford C, Zhang Z, Davis Z, Barber GN, Glaunsinger BA, Dittmer DP, Damania B.

Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):E4306-15. doi: 10.1073/pnas.1503831112. Epub 2015 Jul 21.

39.

Solitary supratentorial Listeria monocytogenes brain abscess in an immunocompromised patient.

West JA, Onofrio AR, Martinez LC, Opatowsky MJ, Spak CW, Layton KF.

Proc (Bayl Univ Med Cent). 2015 Jul;28(3):337-9.

40.

Radiographic findings in the nail-patella syndrome.

West JA, Louis TH.

Proc (Bayl Univ Med Cent). 2015 Jul;28(3):334-6.

41.

Comprehensive Metabolic Profiling of Age-Related Mitochondrial Dysfunction in the High-Fat-Fed ob/ob Mouse Heart.

Wang X, West JA, Murray AJ, Griffin JL.

J Proteome Res. 2015 Jul 2;14(7):2849-62. doi: 10.1021/acs.jproteome.5b00128. Epub 2015 Jun 22.

PMID:
25985803
42.

Behavioural and molecular endophenotypes in psychotic disorders reveal heritable abnormalities in glutamatergic neurotransmission.

Scoriels L, Salek RM, Goodby E, Grainger D, Dean AM, West JA, Griffin JL, Suckling J, Nathan PJ, Lennox BR, Murray GK, Bullmore ET, Jones PB.

Transl Psychiatry. 2015 Mar 31;5:e540. doi: 10.1038/tp.2015.26.

43.

A review of odd-chain fatty acid metabolism and the role of pentadecanoic Acid (c15:0) and heptadecanoic Acid (c17:0) in health and disease.

Jenkins B, West JA, Koulman A.

Molecules. 2015 Jan 30;20(2):2425-44. doi: 10.3390/molecules20022425. Review.

44.

Evasion of innate cytosolic DNA sensing by a gammaherpesvirus facilitates establishment of latent infection.

Sun C, Schattgen SA, Pisitkun P, Jorgensen JP, Hilterbrand AT, Wang LJ, West JA, Hansen K, Horan KA, Jakobsen MR, O'Hare P, Adler H, Sun R, Ploegh HL, Damania B, Upton JW, Fitzgerald KA, Paludan SR.

J Immunol. 2015 Feb 15;194(4):1819-31. doi: 10.4049/jimmunol.1402495. Epub 2015 Jan 16.

45.

Purification of specific chromatin regions using oligonucleotides: capture hybridization analysis of RNA targets (CHART).

Davis CP, West JA.

Methods Mol Biol. 2015;1262:167-82. doi: 10.1007/978-1-4939-2253-6_10.

PMID:
25555581
46.

Polyclonal T-cells express CD1a in Langerhans cell histiocytosis (LCH) lesions.

West JA, Olsen SL, Mitchell JM, Priddle RE, Luke JM, Akefeldt SO, Henter JI, Turville C, Kannourakis G.

PLoS One. 2014 Oct 24;9(10):e109586. doi: 10.1371/journal.pone.0109586. eCollection 2014.

47.

Impaired in vivo mitochondrial Krebs cycle activity after myocardial infarction assessed using hyperpolarized magnetic resonance spectroscopy.

Dodd MS, Atherton HJ, Carr CA, Stuckey DJ, West JA, Griffin JL, Radda GK, Clarke K, Heather LC, Tyler DJ.

Circ Cardiovasc Imaging. 2014 Nov;7(6):895-904. doi: 10.1161/CIRCIMAGING.114.001857. Epub 2014 Sep 8.

48.

Dietary nitrate increases arginine availability and protects mitochondrial complex I and energetics in the hypoxic rat heart.

Ashmore T, Fernandez BO, Branco-Price C, West JA, Cowburn AS, Heather LC, Griffin JL, Johnson RS, Feelisch M, Murray AJ.

J Physiol. 2014 Nov 1;592(21):4715-31. doi: 10.1113/jphysiol.2014.275263. Epub 2014 Aug 28.

49.

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming.

West JA, Cook A, Alver BH, Stadtfeld M, Deaton AM, Hochedlinger K, Park PJ, Tolstorukov MY, Kingston RE.

Nat Commun. 2014 Aug 27;5:4719. doi: 10.1038/ncomms5719.

50.

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.

West JA, Davis CP, Sunwoo H, Simon MD, Sadreyev RI, Wang PI, Tolstorukov MY, Kingston RE.

Mol Cell. 2014 Sep 4;55(5):791-802. doi: 10.1016/j.molcel.2014.07.012. Epub 2014 Aug 21.

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