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Principles of Intentional Mentoring.

Werner-Washburne M.

CBE Life Sci Educ. 2018 Sep;17(3):es8. doi: 10.1187/cbe.18-05-0074. No abstract available.


Mentoring for diversity in technology.

Werner-Washburne M.

Nat Biotechnol. 2018 Jan;36(1):113-115. doi: 10.1038/nbt.4025. Epub 2017 Dec 18. No abstract available.


Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast.

Young CP, Hillyer C, Hokamp K, Fitzpatrick DJ, Konstantinov NK, Welty JS, Ness SA, Werner-Washburne M, Fleming AB, Osley MA.

BMC Genomics. 2017 Jan 26;18(1):107. doi: 10.1186/s12864-017-3509-9.


Improving Underrepresented Minority Student Persistence in STEM.

Estrada M, Burnett M, Campbell AG, Campbell PB, Denetclaw WF, Gutiérrez CG, Hurtado S, John GH, Matsui J, McGee R, Okpodu CM, Robinson TJ, Summers MF, Werner-Washburne M, Zavala M.

CBE Life Sci Educ. 2016 fall;15(3). pii: es5. doi: 10.1187/cbe.16-01-0038.


Profiling a Selective Probe for RTG Branch of Yeast TORC1 Signaling Pathway.

Chen J, Young SM, Allen C, Waller A, Ursu O, Strouse JJ, Yao T, Golden JE, Peterson BR, Foutz TD, Chavez SE, Perez D, Evangelisti AM, Garcia MJ, Bologa CG, Carter MB, Salas VM, Oprea TI, Edwards BS, Panchaud N, De Virgilio C, Seeber A, Loewith R, Manzanilla E, Werner-Washburne M, Aubé J, Sklar LA.

Probe Reports from the NIH Molecular Libraries Program [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2010-.
2011 Apr 15 [updated 2013 Feb 25].


Identification of a small molecule yeast TORC1 inhibitor with a multiplex screen based on flow cytometry.

Chen J, Young SM, Allen C, Seeber A, Péli-Gulli MP, Panchaud N, Waller A, Ursu O, Yao T, Golden JE, Strouse JJ, Carter MB, Kang H, Bologa CG, Foutz TD, Edwards BS, Peterson BR, Aubé J, Werner-Washburne M, Loewith RJ, De Virgilio C, Sklar LA.

ACS Chem Biol. 2012 Apr 20;7(4):715-22. doi: 10.1021/cb200452r. Epub 2012 Feb 1.


Aging and the survival of quiescent and non-quiescent cells in yeast stationary-phase cultures.

Werner-Washburne M, Roy S, Davidson GS.

Subcell Biochem. 2012;57:123-43. doi: 10.1007/978-94-007-2561-4_6. Review.


A multiple network learning approach to capture system-wide condition-specific responses.

Roy S, Werner-Washburne M, Lane T.

Bioinformatics. 2011 Jul 1;27(13):1832-8. doi: 10.1093/bioinformatics/btr270. Epub 2011 May 5.


Engineering of a redox protein for DNA-directed assembly.

Szilvay GR, Brocato S, Ivnitski D, Li C, De La Iglesia P, Lau C, Chi E, Werner-Washburne M, Banta S, Atanassov P.

Chem Commun (Camb). 2011 Jul 14;47(26):7464-6. doi: 10.1039/c1cc11951f. Epub 2011 May 4.


The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures.

Davidson GS, Joe RM, Roy S, Meirelles O, Allen CP, Wilson MR, Tapia PH, Manzanilla EE, Dodson AE, Chakraborty S, Carter M, Young S, Edwards B, Sklar L, Werner-Washburne M.

Mol Biol Cell. 2011 Apr;22(7):988-98. doi: 10.1091/mbc.E10-06-0499. Epub 2011 Feb 2.


Scalable learning of large networks.

Roy S, Plis S, Werner-Washburne M, Lane T.

IET Syst Biol. 2009 Sep;3(5):404-13. doi: 10.1049/iet-syb.2008.0161.


Exploiting amino acid composition for predicting protein-protein interactions.

Roy S, Martinez D, Platero H, Lane T, Werner-Washburne M.

PLoS One. 2009 Nov 20;4(11):e7813. doi: 10.1371/journal.pone.0007813.


Budding yeast SSD1-V regulates transcript levels of many longevity genes and extends chronological life span in purified quiescent cells.

Li L, Lu Y, Qin LX, Bar-Joseph Z, Werner-Washburne M, Breeden LL.

Mol Biol Cell. 2009 Sep;20(17):3851-64. doi: 10.1091/mbc.E09-04-0347. Epub 2009 Jul 1.


Inference of functional networks of condition-specific response--a case study of quiescence in yeast.

Roy S, Lane T, Werner-Washburne M, Martinez D.

Pac Symp Biocomput. 2009:51-62.


Learning structurally consistent undirected probabilistic graphical models.

Roy S, Lane T, Werner-Washburne M.

Proc Int Conf Mach Learn. 2009;382:905-912.


A system for generating transcription regulatory networks with combinatorial control of transcription.

Roy S, Werner-Washburne M, Lane T.

Bioinformatics. 2008 May 15;24(10):1318-20. doi: 10.1093/bioinformatics/btn126. Epub 2008 Apr 8.


Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures.

Aragon AD, Rodriguez AL, Meirelles O, Roy S, Davidson GS, Tapia PH, Allen C, Joe R, Benn D, Werner-Washburne M.

Mol Biol Cell. 2008 Mar;19(3):1271-80. doi: 10.1091/mbc.E07-07-0666. Epub 2008 Jan 16.


A hidden-state Markov model for cell population deconvolution.

Roy S, Lane T, Allen C, Aragon AD, Werner-Washburne M.

J Comput Biol. 2006 Dec;13(10):1749-74.


Cell-directed assembly of lipid-silica nanostructures providing extended cell viability.

Baca HK, Ashley C, Carnes E, Lopez D, Flemming J, Dunphy D, Singh S, Chen Z, Liu N, Fan H, López GP, Brozik SM, Werner-Washburne M, Brinker CJ.

Science. 2006 Jul 21;313(5785):337-41.


Multivariate curve resolution of time course microarray data.

Wentzell PD, Karakach TK, Roy S, Martinez MJ, Allen CP, Werner-Washburne M.

BMC Bioinformatics. 2006 Jul 13;7:343.


Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures.

Allen C, Büttner S, Aragon AD, Thomas JA, Meirelles O, Jaetao JE, Benn D, Ruby SW, Veenhuis M, Madeo F, Werner-Washburne M.

J Cell Biol. 2006 Jul 3;174(1):89-100.


Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress.

Aragon AD, Quiñones GA, Thomas EV, Roy S, Werner-Washburne M.

Genome Biol. 2006;7(2):R9. Epub 2006 Feb 8. Erratum in: Genome Biol. 2006; 7(8):403.


An automated, pressure-driven sampling device for harvesting from liquid cultures for genomic and biochemical analyses.

Aragon AD, Quiñones GA, Allen C, Thomas J, Roy S, Davidson GS, Wentzell PD, Millier B, Jaetao JE, Rodriguez AL, Werner-Washburne M.

J Microbiol Methods. 2006 May;65(2):357-60. Epub 2005 Sep 28.


Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data.

Timlin JA, Haaland DM, Sinclair MB, Aragon AD, Martinez MJ, Werner-Washburne M.

BMC Genomics. 2005 May 11;6:72.


Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.

Martinez MJ, Roy S, Archuletta AB, Wentzell PD, Anna-Arriola SS, Rodriguez AL, Aragon AD, Quiñones GA, Allen C, Werner-Washburne M.

Mol Biol Cell. 2004 Dec;15(12):5295-305. Epub 2004 Sep 29.


"Sleeping beauty": quiescence in Saccharomyces cerevisiae.

Gray JV, Petsko GA, Johnston GC, Ringe D, Singer RA, Werner-Washburne M.

Microbiol Mol Biol Rev. 2004 Jun;68(2):187-206. Review.


Design, construction, characterization, and application of a hyperspectral microarray scanner.

Sinclair MB, Timlin JA, Haaland DM, Werner-Washburne M.

Appl Opt. 2004 Apr 1;43(10):2079-88.


The genome sequence of the filamentous fungus Neurospora crassa.

Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B.

Nature. 2003 Apr 24;422(6934):859-68.


Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays.

Martinez MJ, Aragon AD, Rodriguez AL, Weber JM, Timlin JA, Sinclair MB, Haaland DM, Werner-Washburne M.

Nucleic Acids Res. 2003 Feb 15;31(4):e18.


Comparative analysis of multiple genome-scale data sets.

Werner-Washburne M, Wylie B, Boyack K, Fuge E, Galbraith J, Weber J, Davidson G.

Genome Res. 2002 Oct;12(10):1564-73.


The genomics of yeast responses to environmental stress and starvation.

Gasch AP, Werner-Washburne M.

Funct Integr Genomics. 2002 Sep;2(4-5):181-92. Epub 2002 Apr 30. Review.


Analysis of the pdx-1 (snz-1/sno-1) region of the Neurospora crassa genome: correlation of pyridoxine-requiring phenotypes with mutations in two structural genes.

Bean LE, Dvorachek WH Jr, Braun EL, Errett A, Saenz GS, Giles MD, Werner-Washburne M, Nelson MA, Natvig DO.

Genetics. 2001 Mar;157(3):1067-75.


The highly conserved, coregulated SNO and SNZ gene families in Saccharomyces cerevisiae respond to nutrient limitation.

Padilla PA, Fuge EK, Crawford ME, Errett A, Werner-Washburne M.

J Bacteriol. 1998 Nov;180(21):5718-26. Erratum in: J Bacteriol 1998 Dec;180(24):6794.


Yeast bcy1 mutants with stationary phase-specific defects.

Peck VM, Fuge EK, Padilla PA, Gomez MA, Werner-Washburne M.

Curr Genet. 1997 Aug;32(2):83-92.


Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa.

Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, Miller R, Ortega J, Pavlova I, Perea J, Todisco S, Trujillo R, Valentine J, Wells A, Werner-Washburne M, Natvig DO, et al.

Fungal Genet Biol. 1997 Jun;21(3):348-63.


A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family.

Braun EL, Fuge EK, Padilla PA, Werner-Washburne M.

J Bacteriol. 1996 Dec;178(23):6865-72.


Stationary phase in Saccharomyces cerevisiae.

Werner-Washburne M, Braun EL, Crawford ME, Peck VM.

Mol Microbiol. 1996 Mar;19(6):1159-66. Review.


Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae.

Fuge EK, Braun EL, Werner-Washburne M.

J Bacteriol. 1994 Sep;176(18):5802-13.


Isolation and characterization of AAP1. A gene encoding an alanine/arginine aminopeptidase in yeast.

Caprioglio DR, Padilla C, Werner-Washburne M.

J Biol Chem. 1993 Jul 5;268(19):14310-5.


Stationary phase in the yeast Saccharomyces cerevisiae.

Werner-Washburne M, Braun E, Johnston GC, Singer RA.

Microbiol Rev. 1993 Jun;57(2):383-401. Review.


Heat shock-mediated cell cycle blockage and G1 cyclin expression in the yeast Saccharomyces cerevisiae.

Rowley A, Johnston GC, Butler B, Werner-Washburne M, Singer RA.

Mol Cell Biol. 1993 Feb;13(2):1034-41.


The translation machinery and 70 kd heat shock protein cooperate in protein synthesis.

Nelson RJ, Ziegelhoffer T, Nicolet C, Werner-Washburne M, Craig EA.

Cell. 1992 Oct 2;71(1):97-105.


SSC1, an essential member of the yeast HSP70 multigene family, encodes a mitochondrial protein.

Craig EA, Kramer J, Shilling J, Werner-Washburne M, Holmes S, Kosic-Smithers J, Nicolet CM.

Mol Cell Biol. 1989 Jul;9(7):3000-8.


Yeast Hsp70 RNA levels vary in response to the physiological status of the cell.

Werner-Washburne M, Becker J, Kosic-Smithers J, Craig EA.

J Bacteriol. 1989 May;171(5):2680-8.


Expression of members of the Saccharomyces cerevisiae hsp70 multigene family.

Werner-Washburne M, Craig EA.

Genome. 1989;31(2):684-9. Review.


A subfamily of stress proteins facilitates translocation of secretory and mitochondrial precursor polypeptides.

Deshaies RJ, Koch BD, Werner-Washburne M, Craig EA, Schekman R.

Nature. 1988 Apr 28;332(6167):800-5.


Complex interactions among members of an essential subfamily of hsp70 genes in Saccharomyces cerevisiae.

Werner-Washburne M, Stone DE, Craig EA.

Mol Cell Biol. 1987 Jul;7(7):2568-77.


Adenine nucleotide translocase-dependent anion transport in pea chloroplasts.

Woldegiorgis G, Voss S, Shrago E, Werner-Washburne M, Keegstra K.

Biochim Biophys Acta. 1985 Dec 16;810(3):340-5.


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