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Individual Assignment of Adult Diffuse Gliomas into the EM/PM Molecular Subtypes Using a TaqMan Low-Density Array.

Li J, Xue Y, Wenger A, Sun Y, Wang Z, Zhang CB, Zhang Y, Fekete Rydenhag B, Bertil Rydenhag B, Jakola AS, Jiang T, Carén H, Fan X.

Clin Cancer Res. 2019 Sep 3. pii: clincanres.0299.2019. doi: 10.1158/1078-0432.CCR-19-0299. [Epub ahead of print]


Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Aug 12. doi: 10.1038/s41587-019-0217-9. [Epub ahead of print]


High-coverage, long-read sequencing of Han Chinese trio reference samples.

Wang YC, Olson ND, Deikus G, Shah H, Wenger AM, Trow J, Xiao C, Sherry S, Salit ML, Zook JM, Smith M, Sebra R.

Sci Data. 2019 Jun 14;6(1):91. doi: 10.1038/s41597-019-0098-2.


Web-based self-help with and without chat counseling to reduce cocaine use in cocaine misusers: Results of a three-arm randomized controlled trial.

Schaub MP, Castro RP, Wenger A, Baumgartner C, Stark L, Ebert DD, Quednow BB, Haug S.

Internet Interv. 2019 May 22;17:100251. doi: 10.1016/j.invent.2019.100251. eCollection 2019 Sep.


Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, Kong X, Hormozdiari F, Lee D, Wenger AM, Hastie AR, Antaki D, Anantharaman T, Audano PA, Brand H, Cantsilieris S, Cao H, Cerveira E, Chen C, Chen X, Chin CS, Chong Z, Chuang NT, Lambert CC, Church DM, Clarke L, Farrell A, Flores J, Galeev T, Gorkin DU, Gujral M, Guryev V, Heaton WH, Korlach J, Kumar S, Kwon JY, Lam ET, Lee JE, Lee J, Lee WP, Lee SP, Li S, Marks P, Viaud-Martinez K, Meiers S, Munson KM, Navarro FCP, Nelson BJ, Nodzak C, Noor A, Kyriazopoulou-Panagiotopoulou S, Pang AWC, Qiu Y, Rosanio G, Ryan M, Stütz A, Spierings DCJ, Ward A, Welch AE, Xiao M, Xu W, Zhang C, Zhu Q, Zheng-Bradley X, Lowy E, Yakneen S, McCarroll S, Jun G, Ding L, Koh CL, Ren B, Flicek P, Chen K, Gerstein MB, Kwok PY, Lansdorp PM, Marth GT, Sebat J, Shi X, Bashir A, Ye K, Devine SE, Talkowski ME, Mills RE, Marschall T, Korbel JO, Eichler EE, Lee C.

Nat Commun. 2019 Apr 16;10(1):1784. doi: 10.1038/s41467-018-08148-z.


[A new life for old anatomical wakes].

Toutous Trellu L, Stahl Gretsch LI, Wenger A.

Rev Med Suisse. 2019 Mar 27;15(644):662-665. French.


Trabeculectomy with Suprachoroidal Derivation in Eyes with Uncontrolled Glaucoma: A Case Series with a 24-Month Follow-up.

Perez-Grossmann RA, Grigera DE, Wenger A.

Ophthalmol Ther. 2019 Jun;8(2):323-331. doi: 10.1007/s40123-019-0179-5. Epub 2019 Mar 16.


Intratumor DNA methylation heterogeneity in glioblastoma: implications for DNA methylation-based classification.

Wenger A, Ferreyra Vega S, Kling T, Bontell TO, Jakola AS, Carén H.

Neuro Oncol. 2019 May 6;21(5):616-627. doi: 10.1093/neuonc/noz011.


Quantitative Analysis of Heel Skin Microcirculation Using Laser Doppler Flowmetry and Tissue Spectrophotometry.

Held M, Bender D, Krauß S, Wenger A, Daigeler A, Rothenberger J.

Adv Skin Wound Care. 2019 Feb;32(2):88-92. doi: 10.1097/01.ASW.0000549610.99102.01.


Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions.

Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A, Nutiu R, Teichmann S, Bühler M.

Life Sci Alliance. 2018 Jul 31;1(4):e201800124. doi: 10.26508/lsa.201800124. eCollection 2018 Aug.


Efficacy of an Online Self-Help Treatment for Comorbid Alcohol Misuse and Emotional Problems in Young Adults: Protocol for a Randomized Controlled Trial.

Frohlich JR, Rapinda KK, Schaub MP, Wenger A, Baumgartner C, Johnson EA, O'Connor RM, Vincent N, Blankers M, Ebert DD, Hadjistavropoulos H, Mackenzie CS, Keough MT.

JMIR Res Protoc. 2018 Nov 1;7(11):e11298. doi: 10.2196/11298.


Fine sediment and particulate organic matter: A review and case study on ridge-to-reef transport, transformations, fates, and impacts on marine ecosystems.

Bainbridge Z, Lewis S, Bartley R, Fabricius K, Collier C, Waterhouse J, Garzon-Garcia A, Robson B, Burton J, Wenger A, Brodie J.

Mar Pollut Bull. 2018 Oct;135:1205-1220. doi: 10.1016/j.marpolbul.2018.08.002. Epub 2018 Sep 7. Review.


Step-by-Step: a new WHO digital mental health intervention for depression.

Carswell K, Harper-Shehadeh M, Watts S, Van't Hof E, Abi Ramia J, Heim E, Wenger A, van Ommeren M.

Mhealth. 2018 Aug 13;4:34. doi: 10.21037/mhealth.2018.08.01. eCollection 2018.


Efficacy of a mobile phone-based life-skills training program for substance use prevention among adolescents: study protocol of a cluster-randomised controlled trial.

Haug S, Paz Castro R, Wenger A, Schaub MP.

BMC Public Health. 2018 Sep 10;18(1):1102. doi: 10.1186/s12889-018-5969-5.


Independent erosion of conserved transcription factor binding sites points to shared hindlimb, vision and external testes loss in different mammals.

Berger MJ, Wenger AM, Guturu H, Bejerano G.

Nucleic Acids Res. 2018 Oct 12;46(18):9299-9308. doi: 10.1093/nar/gky741.


Scenario planning with linked land-sea models inform where forest conservation actions will promote coral reef resilience.

Delevaux JMS, Jupiter SD, Stamoulis KA, Bremer LL, Wenger AS, Dacks R, Garrod P, Falinski KA, Ticktin T.

Sci Rep. 2018 Aug 20;8(1):12465. doi: 10.1038/s41598-018-29951-0.


MCM2 promotes symmetric inheritance of modified histones during DNA replication.

Petryk N, Dalby M, Wenger A, Stromme CB, Strandsby A, Andersson R, Groth A.

Science. 2018 Sep 28;361(6409):1389-1392. doi: 10.1126/science.aau0294. Epub 2018 Aug 16.


An MTF1 binding site disrupted by a homozygous variant in the promoter of ATP7B likely causes Wilson Disease.

Chen HI, Jagadeesh KA, Birgmeier J, Wenger AM, Guturu H, Schelley S, Bernstein JA, Bejerano G.

Eur J Hum Genet. 2018 Dec;26(12):1810-1818. doi: 10.1038/s41431-018-0221-4. Epub 2018 Aug 7.


Phrank measures phenotype sets similarity to greatly improve Mendelian diagnostic disease prioritization.

Jagadeesh KA, Birgmeier J, Guturu H, Deisseroth CA, Wenger AM, Bernstein JA, Bejerano G.

Genet Med. 2019 Feb;21(2):464-470. doi: 10.1038/s41436-018-0072-y. Epub 2018 Jul 12.


Cell line-based xenograft mouse model of paediatric glioma stem cells mirrors the clinical course of the patient.

Larsson S, Wenger A, Dósa S, Sabel M, Kling T, Carén H.

Carcinogenesis. 2018 Oct 8;39(10):1304-1309. doi: 10.1093/carcin/bgy091.


Climate Velocity Can Inform Conservation in a Warming World.

Brito-Morales I, García Molinos J, Schoeman DS, Burrows MT, Poloczanska ES, Brown CJ, Ferrier S, Harwood TD, Klein CJ, McDonald-Madden E, Moore PJ, Pandolfi JM, Watson JEM, Wenger AS, Richardson AJ.

Trends Ecol Evol. 2018 Jun;33(6):441-457. doi: 10.1016/j.tree.2018.03.009. Epub 2018 Apr 30. Review.


Biallelic loss-of-function WNT5A mutations in an infant with severe and atypical manifestations of Robinow syndrome.

Birgmeier J, Esplin ED, Jagadeesh KA, Guturu H, Wenger AM, Chaib H, Buckingham JA, Bejerano G, Bernstein JA.

Am J Med Genet A. 2018 Apr;176(4):1030-1036. doi: 10.1002/ajmg.a.38636.


Defining wet season water quality target concentrations for ecosystem conservation using empirical light attenuation models: A case study in the Great Barrier Reef (Australia).

Petus C, Devlin M, Teixera da Silva E, Lewis S, Waterhouse J, Wenger A, Bainbridge Z, Tracey D.

J Environ Manage. 2018 May 1;213:451-466. doi: 10.1016/j.jenvman.2018.02.028.


The Effects of Social Presence on Adherence-Focused Guidance in Problematic Cannabis Users: Protocol for the CANreduce 2.0 Randomized Controlled Trial.

Amann M, Haug S, Wenger A, Baumgartner C, Ebert DD, Berger T, Stark L, Walter M, Schaub MP.

JMIR Res Protoc. 2018 Jan 31;7(1):e30. doi: 10.2196/resprot.9484.


Determinants for Effective ALECSAT Immunotherapy Treatment on Autologous Patient-Derived Glioblastoma Stem Cells.

Wenger A, Werlenius K, Hallner A, Thorén FB, Farahmand D, Tisell M, Smits A, Rydenhag B, Jakola AS, Carén H.

Neoplasia. 2018 Jan;20(1):25-31. doi: 10.1016/j.neo.2017.10.006. Epub 2017 Dec 1.


Pediatric brain tumor cells release exosomes with a miRNA repertoire that differs from exosomes secreted by normal cells.

Tűzesi Á, Kling T, Wenger A, Lunavat TR, Jang SC, Rydenhag B, Lötvall J, Pollard SM, Danielsson A, Carén H.

Oncotarget. 2017 Oct 6;8(52):90164-90175. doi: 10.18632/oncotarget.21621. eCollection 2017 Oct 27.


Species-specific impacts of suspended sediments on gill structure and function in coral reef fishes.

Hess S, Prescott LJ, Hoey AS, McMahon SA, Wenger AS, Rummer JL.

Proc Biol Sci. 2017 Nov 15;284(1866). pii: 20171279. doi: 10.1098/rspb.2017.1279.


Variant Review with the Integrative Genomics Viewer.

Robinson JT, Thorvaldsdóttir H, Wenger AM, Zehir A, Mesirov JP.

Cancer Res. 2017 Nov 1;77(21):e31-e34. doi: 10.1158/0008-5472.CAN-17-0337.


Mutations of AKT3 are associated with a wide spectrum of developmental disorders including extreme megalencephaly.

Alcantara D, Timms AE, Gripp K, Baker L, Park K, Collins S, Cheng C, Stewart F, Mehta SG, Saggar A, Sztriha L, Zombor M, Caluseriu O, Mesterman R, Van Allen MI, Jacquinet A, Ygberg S, Bernstein JA, Wenger AM, Guturu H, Bejerano G, Gomez-Ospina N, Lehman A, Alfei E, Pantaleoni C, Conti V, Guerrini R, Moog U, Graham JM Jr, Hevner R, Dobyns WB, O'Driscoll M, Mirzaa GM.

Brain. 2017 Oct 1;140(10):2610-2622. doi: 10.1093/brain/awx203.


Alcohol e-Help: study protocol for a web-based self-help program to reduce alcohol use in adults with drinking patterns considered harmful, hazardous or suggestive of dependence in middle-income countries.

Schaub MP, Tiburcio M, Martinez N, Ambekar A, Balhara YPS, Wenger A, Monezi Andrade AL, Padruchny D, Osipchik S, Gehring E, Poznyak V, Rekve D, Souza-Formigoni MLO; WHO e-Health Project on Alcohol and Health Investigators Group.

Addiction. 2018 Feb;113(2):346-352. doi: 10.1111/add.14034. Epub 2017 Oct 26.


[Completeness and reproducibility of surgical reports: A retrospective analysis of documentation quality using the example of Dupuytren's disease].

Russe E, Wenger A, Wechselberger G, Piza-Katzer H.

Handchir Mikrochir Plast Chir. 2017 Aug;49(3):148-153. doi: 10.1055/s-0043-115221. Epub 2017 Aug 14. German.


Tracing the influence of land-use change on water quality and coral reefs using a Bayesian model.

Brown CJ, Jupiter SD, Albert S, Klein CJ, Mangubhai S, Maina JM, Mumby P, Olley J, Stewart-Koster B, Tulloch V, Wenger A.

Sci Rep. 2017 Jul 6;7(1):4740. doi: 10.1038/s41598-017-05031-7.


Long-read genome sequencing identifies causal structural variation in a Mendelian disease.

Merker JD, Wenger AM, Sneddon T, Grove M, Zappala Z, Fresard L, Waggott D, Utiramerur S, Hou Y, Smith KS, Montgomery SB, Wheeler M, Buchan JG, Lambert CC, Eng KS, Hickey L, Korlach J, Ford J, Ashley EA.

Genet Med. 2018 Jan;20(1):159-163. doi: 10.1038/gim.2017.86. Epub 2017 Jun 22.


Predicting island biosecurity risk from introduced fauna using Bayesian Belief Networks.

Lohr C, Wenger A, Woodberry O, Pressey RL, Morris K.

Sci Total Environ. 2017 Dec 1;601-602:1173-1181. doi: 10.1016/j.scitotenv.2017.05.281. Epub 2017 Jun 9.


RNA fate determination through cotranscriptional adenosine methylation and microprocessor binding.

Knuckles P, Carl SH, Musheev M, Niehrs C, Wenger A, Bühler M.

Nat Struct Mol Biol. 2017 Jul;24(7):561-569. doi: 10.1038/nsmb.3419. Epub 2017 Jun 5.


Skin Perfusion Changes within 12 h after Axillary Plexus Block.

Wenger A, Amr A, Schaller HE, Rothenberger J.

Eur Surg Res. 2017;58(5-6):227-234. doi: 10.1159/000475813. Epub 2017 Jun 1.


Quantification of the vasodilatory effect of axillary plexus block. A prospective controlled study.

Wenger A, Rothenberger J, Hakim-Meibodi LE, Notheisen T, Schaller HE.

J Surg Res. 2017 May 15;212:153-158. doi: 10.1016/j.jss.2017.01.009. Epub 2017 Jan 27.


Patient-derived cells modeling pediatric glioma.

Wenger A, Larsson S, Carén H.

Aging (Albany NY). 2017 May 8;9(5):1353-1354. doi: 10.18632/aging.101237. No abstract available.


[Reliable Flaps for Congenitally Malformed Hands].

Piza-Katzer H, Wenger A.

Handchir Mikrochir Plast Chir. 2017 Feb;49(1):20-28. doi: 10.1055/s-0042-116353. Epub 2017 Apr 19. Review. German.


Binding of Thioflavin-T to Amyloid Fibrils Leads to Fluorescence Self-Quenching and Fibril Compaction.

Lindberg DJ, Wenger A, Sundin E, Wesén E, Westerlund F, Esbjörner EK.

Biochemistry. 2017 Apr 25;56(16):2170-2174. doi: 10.1021/acs.biochem.7b00035. Epub 2017 Apr 17.


Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours.

Kling T, Wenger A, Beck S, Carén H.

Clin Epigenetics. 2017 Apr 4;9:33. doi: 10.1186/s13148-017-0333-7. eCollection 2017.


Relation of Heart Rate and its Variability during Sleep with Age, Physical Activity, and Body Composition in Young Children.

Herzig D, Eser P, Radtke T, Wenger A, Rusterholz T, Wilhelm M, Achermann P, Arhab A, Jenni OG, Kakebeeke TH, Leeger-Aschmann CS, Messerli-Bürgy N, Meyer AH, Munsch S, Puder JJ, Schmutz EA, Stülb K, Zysset AE, Kriemler S.

Front Physiol. 2017 Feb 24;8:109. doi: 10.3389/fphys.2017.00109. eCollection 2017.


Stem cell cultures derived from pediatric brain tumors accurately model the originating tumors.

Wenger A, Larsson S, Danielsson A, Elbæk KJ, Kettunen P, Tisell M, Sabel M, Lannering B, Nordborg C, Schepke E, Carén H.

Oncotarget. 2017 Mar 21;8(12):18626-18639. doi: 10.18632/oncotarget.14826.


[Technique of Suspension Surgery Using Palmaris Longus Tendon for Correction of Severe Blepharoptosis].

Wenger A, Piza-Katzer H.

Klin Monbl Augenheilkd. 2017 Jan;234(1):46-52. doi: 10.1055/s-0042-121805. Epub 2017 Jan 30. German.


The direction of human mesenchymal stem cells into the chondrogenic lineage is influenced by the features of hydrogel carriers.

Hansson A, Wenger A, Henriksson HB, Li S, Johansson BR, Brisby H.

Tissue Cell. 2017 Feb;49(1):35-44. doi: 10.1016/j.tice.2016.12.004. Epub 2016 Dec 13.


M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity.

Jagadeesh KA, Wenger AM, Berger MJ, Guturu H, Stenson PD, Cooper DN, Bernstein JA, Bejerano G.

Nat Genet. 2016 Dec;48(12):1581-1586. doi: 10.1038/ng.3703. Epub 2016 Oct 24.


Chitayat syndrome: hyperphalangism, characteristic facies, hallux valgus and bronchomalacia results from a recurrent c.266A>G p.(Tyr89Cys) variant in the ERF gene.

Balasubramanian M, Lord H, Levesque S, Guturu H, Thuriot F, Sillon G, Wenger AM, Sureka DL, Lester T, Johnson DS, Bowen J, Calhoun AR, Viskochil DH; DDD Study, Bejerano G, Bernstein JA, Chitayat D.

J Med Genet. 2017 Mar;54(3):157-165. doi: 10.1136/jmedgenet-2016-104143. Epub 2016 Oct 13.


Systematic reanalysis of clinical exome data yields additional diagnoses: implications for providers.

Wenger AM, Guturu H, Bernstein JA, Bejerano G.

Genet Med. 2017 Feb;19(2):209-214. doi: 10.1038/gim.2016.88. Epub 2016 Jul 21.


The impact of individual and combined abiotic factors on daily otolith growth in a coral reef fish.

Wenger AS, Whinney J, Taylor B, Kroon F.

Sci Rep. 2016 Jun 28;6:28875. doi: 10.1038/srep28875.


Efficacy of an internet-based self-help intervention to reduce co-occurring alcohol misuse and depression symptoms in adults: study protocol of a three-arm randomised controlled trial.

Schaub MP, Blankers M, Lehr D, Boss L, Riper H, Dekker J, Goudriaan AE, Maier LJ, Haug S, Amann M, Dey M, Wenger A, Ebert DD.

BMJ Open. 2016 May 25;6(5):e011457. doi: 10.1136/bmjopen-2016-011457.

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