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Items: 44

1.

Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota.

Zhang S, Song W, Wemheuer B, Reveillaud J, Webster N, Thomas T.

mSystems. 2019 Aug 13;4(4). pii: e00288-19. doi: 10.1128/mSystems.00288-19.

2.

Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages.

Bakenhus I, Wemheuer B, Akyol P, Giebel HA, Dlugosch L, Daniel R, Simon M.

Syst Appl Microbiol. 2019 Sep;42(5):126000. doi: 10.1016/j.syapm.2019.06.005. Epub 2019 Jul 4.

PMID:
31303385
3.

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean.

Wemheuer F, von Hoyningen-Huene AJE, Pohlner M, Degenhardt J, Engelen B, Daniel R, Wemheuer B.

Archaea. 2019 Mar 3;2019:3717239. doi: 10.1155/2019/3717239. eCollection 2019.

4.

The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions.

Pohlner M, Dlugosch L, Wemheuer B, Mills H, Engelen B, Reese BK.

Front Microbiol. 2019 Apr 2;10:659. doi: 10.3389/fmicb.2019.00659. eCollection 2019.

5.

Different response of bacteria, archaea and fungi to process parameters in nine full-scale anaerobic digesters.

Langer SG, Gabris C, Einfalt D, Wemheuer B, Kazda M, Bengelsdorf FR.

Microb Biotechnol. 2019 Apr 17. doi: 10.1111/1751-7915.13409. [Epub ahead of print]

6.

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches.

Song W, Wemheuer B, Zhang S, Steensen K, Thomas T.

Microbiome. 2019 Mar 4;7(1):36. doi: 10.1186/s40168-019-0649-y.

7.

Modularity and predicted functions of the global sponge-microbiome network.

Lurgi M, Thomas T, Wemheuer B, Webster NS, Montoya JM.

Nat Commun. 2019 Mar 1;10(1):992. doi: 10.1038/s41467-019-08925-4.

8.

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes.

Wemheuer B, Thomas T, Wemheuer F.

Microorganisms. 2019 Jan 27;7(2). pii: E37. doi: 10.3390/microorganisms7020037.

9.

Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi).

Wilkes Walburn J, Wemheuer B, Thomas T, Copeland E, O'Connor W, Booth M, Fielder S, Egan S.

Microb Biotechnol. 2019 Mar;12(2):275-288. doi: 10.1111/1751-7915.13323. Epub 2018 Dec 1.

10.

Biogeography of the human ocular microbiota.

Ozkan J, Willcox M, Wemheuer B, Wilcsek G, Coroneo M, Thomas T.

Ocul Surf. 2019 Jan;17(1):111-118. doi: 10.1016/j.jtos.2018.11.005. Epub 2018 Nov 13.

PMID:
30445178
11.

Assembly processes of trophic guilds in the root mycobiome of temperate forests.

Schröter K, Wemheuer B, Pena R, Schöning I, Ehbrecht M, Schall P, Ammer C, Daniel R, Polle A.

Mol Ecol. 2019 Jan;28(2):348-364. doi: 10.1111/mec.14887. Epub 2018 Oct 28.

PMID:
30276908
12.

Identification and Visualization of a Distinct Microbiome in Ocular Surface Conjunctival Tissue.

Ozkan J, Coroneo M, Willcox M, Wemheuer B, Thomas T.

Invest Ophthalmol Vis Sci. 2018 Aug 1;59(10):4268-4276. doi: 10.1167/iovs.18-24651.

PMID:
30140925
13.

Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade.

Daniel R, Simon M, Wemheuer B.

Front Microbiol. 2018 Jun 1;9:1185. doi: 10.3389/fmicb.2018.01185. eCollection 2018. No abstract available.

14.

Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra.

Wemheuer F, Wemheuer B, Hollensteiner J, Daniel R, Poehlein A.

Genome Announc. 2018 Feb 8;6(6). pii: e00017-18. doi: 10.1128/genomeA.00017-18.

15.

Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne.

Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B.

Genome Announc. 2018 Feb 1;6(5). pii: e00011-18. doi: 10.1128/genomeA.00011-18.

16.

First Insights into the Draft Genome Sequence of the Endophyte Paenibacillus amylolyticus Strain GM1FR, Isolated from Festuca rubra L.

Poehlein A, Hollensteiner J, Granzow S, Wemheuer B, Vidal S, Wemheuer F.

Genome Announc. 2018 Jan 25;6(4). pii: e01516-17. doi: 10.1128/genomeA.01516-17.

17.

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces.

Pohlner M, Degenhardt J, von Hoyningen-Huene AJE, Wemheuer B, Erlmann N, Schnetger B, Badewien TH, Engelen B.

Front Microbiol. 2017 Dec 18;8:2550. doi: 10.3389/fmicb.2017.02550. eCollection 2017.

18.

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.

Wemheuer B, Wemheuer F, Meier D, Billerbeck S, Giebel HA, Simon M, Scherber C, Daniel R.

Microorganisms. 2017 Nov 5;5(4). pii: E68. doi: 10.3390/microorganisms5040068.

19.

Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle.

Dogs M, Wemheuer B, Wolter L, Bergen N, Daniel R, Simon M, Brinkhoff T.

Syst Appl Microbiol. 2017 Sep;40(6):370-382. doi: 10.1016/j.syapm.2017.05.006. Epub 2017 Jun 15.

PMID:
28641923
20.

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment.

Granzow S, Kaiser K, Wemheuer B, Pfeiffer B, Daniel R, Vidal S, Wemheuer F.

Front Microbiol. 2017 May 29;8:902. doi: 10.3389/fmicb.2017.00902. eCollection 2017.

21.

Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea.

Wöhlbrand L, Wemheuer B, Feenders C, Ruppersberg HS, Hinrichs C, Blasius B, Daniel R, Rabus R.

Front Microbiol. 2017 Mar 24;8:442. doi: 10.3389/fmicb.2017.00442. eCollection 2017.

22.

Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L.

Wemheuer F, Hollensteiner J, Poehlein A, Granzow S, Daniel R, Vidal S, Wemheuer B.

Genome Announc. 2017 Mar 30;5(13). pii: e00086-17. doi: 10.1128/genomeA.00086-17.

23.

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes.

Wemheuer F, Kaiser K, Karlovsky P, Daniel R, Vidal S, Wemheuer B.

Sci Rep. 2017 Jan 19;7:40914. doi: 10.1038/srep40914.

24.

Assessing Bacterial and Fungal Diversity in the Plant Endosphere.

Wemheuer B, Wemheuer F.

Methods Mol Biol. 2017;1539:75-84.

PMID:
27900685
25.

Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies.

Schneider D, Wemheuer F, Pfeiffer B, Wemheuer B.

Methods Mol Biol. 2017;1539:13-22.

PMID:
27900681
26.

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests.

Kaiser K, Wemheuer B, Korolkow V, Wemheuer F, Nacke H, Schöning I, Schrumpf M, Daniel R.

Sci Rep. 2016 Sep 21;6:33696. doi: 10.1038/srep33696.

27.

Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage.

Billerbeck S, Wemheuer B, Voget S, Poehlein A, Giebel HA, Brinkhoff T, Gram L, Jeffrey WH, Daniel R, Simon M.

Nat Microbiol. 2016 May 16;1(7):16063. doi: 10.1038/nmicrobiol.2016.63.

PMID:
27572966
28.

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.

Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.

Biotechnol Biofuels. 2016 Jun 7;9:121. doi: 10.1186/s13068-016-0534-x. eCollection 2016.

29.

Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing.

Tiede J, Wemheuer B, Traugott M, Daniel R, Tscharntke T, Ebeling A, Scherber C.

PLoS One. 2016 Feb 9;11(2):e0148781. doi: 10.1371/journal.pone.0148781. eCollection 2016.

30.

Impact of grassland management regimes on bacterial endophyte diversity differs with grass species.

Wemheuer F, Wemheuer B, Kretzschmar D, Pfeiffer B, Herzog S, Daniel R, Vidal S.

Lett Appl Microbiol. 2016 Apr;62(4):323-9. doi: 10.1111/lam.12551. Epub 2016 Mar 9.

31.

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system.

Osterholz H, Singer G, Wemheuer B, Daniel R, Simon M, Niggemann J, Dittmar T.

ISME J. 2016 Jul;10(7):1717-30. doi: 10.1038/ismej.2015.231. Epub 2016 Jan 22.

32.

Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils.

Herzog S, Wemheuer F, Wemheuer B, Daniel R.

PLoS One. 2015 Dec 22;10(12):e0145575. doi: 10.1371/journal.pone.0145575. eCollection 2015.

33.

Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea.

Kanukollu S, Wemheuer B, Herber J, Billerbeck S, Lucas J, Daniel R, Simon M, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv145. doi: 10.1093/femsec/fiv145. Epub 2015 Nov 24.

PMID:
26607167
34.

Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors.

Gram L, Rasmussen BB, Wemheuer B, Bernbom N, Ng YY, Porsby CH, Breider S, Brinkhoff T.

Syst Appl Microbiol. 2015 Oct;38(7):483-93. doi: 10.1016/j.syapm.2015.07.006. Epub 2015 Aug 14.

PMID:
26343311
35.

The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches.

Wemheuer B, Wemheuer F, Hollensteiner J, Meyer FD, Voget S, Daniel R.

Front Microbiol. 2015 Aug 11;6:805. doi: 10.3389/fmicb.2015.00805. eCollection 2015.

36.

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.

Aßhauer KP, Wemheuer B, Daniel R, Meinicke P.

Bioinformatics. 2015 Sep 1;31(17):2882-4. doi: 10.1093/bioinformatics/btv287. Epub 2015 May 7.

37.

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans.

Wietz M, Wemheuer B, Simon H, Giebel HA, Seibt MA, Daniel R, Brinkhoff T, Simon M.

Environ Microbiol. 2015 Oct;17(10):3822-31. doi: 10.1111/1462-2920.12842. Epub 2015 Apr 8.

PMID:
25753990
38.

A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes.

Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B, Alawi M, Poehlein A, Chow J, Turaev D, Rattei T, Schmeisser C, Salomon J, Olsen PB, Daniel R, Grundhoff A, Borchert MS, Streit WR.

PLoS One. 2014 Sep 10;9(9):e106707. doi: 10.1371/journal.pone.0106707. eCollection 2014.

39.

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses.

Voget S, Wemheuer B, Brinkhoff T, Vollmers J, Dietrich S, Giebel HA, Beardsley C, Sardemann C, Bakenhus I, Billerbeck S, Daniel R, Simon M.

ISME J. 2015 Feb;9(2):371-84. doi: 10.1038/ismej.2014.134. Epub 2014 Aug 1.

40.

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches.

Wemheuer B, Güllert S, Billerbeck S, Giebel HA, Voget S, Simon M, Daniel R.

FEMS Microbiol Ecol. 2014 Feb;87(2):378-89. doi: 10.1111/1574-6941.12230. Epub 2013 Oct 25.

41.

Metagenome survey of a multispecies and alga-associated biofilm revealed key elements of bacterial-algal interactions in photobioreactors.

Krohn-Molt I, Wemheuer B, Alawi M, Poehlein A, Güllert S, Schmeisser C, Pommerening-Röser A, Grundhoff A, Daniel R, Hanelt D, Streit WR.

Appl Environ Microbiol. 2013 Oct;79(20):6196-206. doi: 10.1128/AEM.01641-13. Epub 2013 Aug 2.

42.

High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods.

Sahm K, John P, Nacke H, Wemheuer B, Grote R, Daniel R, Antranikian G.

Extremophiles. 2013 Jul;17(4):649-62. doi: 10.1007/s00792-013-0548-2. Epub 2013 May 26.

PMID:
23708551
43.

Microbial diversity and biochemical potential encoded by thermal spring metagenomes derived from the Kamchatka Peninsula.

Wemheuer B, Taube R, Akyol P, Wemheuer F, Daniel R.

Archaea. 2013;2013:136714. doi: 10.1155/2013/136714. Epub 2013 Feb 27.

44.

RNA-based assessment of diversity and composition of active archaeal communities in the German Bight.

Wemheuer B, Wemheuer F, Daniel R.

Archaea. 2012;2012:695826. doi: 10.1155/2012/695826. Epub 2012 Nov 12.

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