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Candida auris: A Review of Recommendations for Detection and Control in Healthcare Settings.

Caceres DH, Forsberg K, Welsh RM, Sexton DJ, Lockhart SR, Jackson BR, Chiller T.

J Fungi (Basel). 2019 Nov 28;5(4). pii: E111. doi: 10.3390/jof5040111. Review.


Virus-induced natural killer cell lysis of T cell subsets.

Daniels KA, O'Donnell CL, Castonguay C, Strutt TM, McKinstry KK, Swain SL, Welsh RM.

Virology. 2020 Jan 2;539:26-37. doi: 10.1016/j.virol.2019.10.003. Epub 2019 Oct 18.


Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast Candida auris.

Welsh RM, Sexton DJ, Forsberg K, Vallabhaneni S, Litvintseva A.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e00007-19. doi: 10.1128/JCM.00007-19. Print 2019 Apr.


Cutting Edge: Early Attrition of Memory T Cells during Inflammation and Costimulation Blockade Is Regulated Concurrently by Proapoptotic Proteins Fas and Bim.

Jangalwe S, Kapoor VN, Xu J, Girnius N, Kennedy NJ, Edwards YJK, Welsh RM, Davis RJ, Brehm MA.

J Immunol. 2019 Feb 1;202(3):647-651. doi: 10.4049/jimmunol.1800278. Epub 2019 Jan 4.


Phenotypic switching in newly emerged multidrug-resistant pathogen Candida auris.

Bentz ML, Sexton DJ, Welsh RM, Litvintseva AP.

Med Mycol. 2018 Oct 16. doi: 10.1093/mmy/myy100. [Epub ahead of print]


Direct Detection of Emergent Fungal Pathogen Candida auris in Clinical Skin Swabs by SYBR Green-Based Quantitative PCR Assay.

Sexton DJ, Kordalewska M, Bentz ML, Welsh RM, Perlin DS, Litvintseva AP.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e01337-18. doi: 10.1128/JCM.01337-18. Print 2018 Dec.


Evaluation of a new T2 Magnetic Resonance assay for rapid detection of emergent fungal pathogen Candida auris on clinical skin swab samples.

Sexton DJ, Bentz ML, Welsh RM, Litvintseva AP.

Mycoses. 2018 Oct;61(10):786-790. doi: 10.1111/myc.12817. Epub 2018 Jul 13.


Molecular Epidemiology of Candida auris in Colombia Reveals a Highly Related, Countrywide Colonization With Regional Patterns in Amphotericin B Resistance.

Escandón P, Chow NA, Caceres DH, Gade L, Berkow EL, Armstrong P, Rivera S, Misas E, Duarte C, Moulton-Meissner H, Welsh RM, Parra C, Pescador LA, Villalobos N, Salcedo S, Berrio I, Varón C, Espinosa-Bode A, Lockhart SR, Jackson BR, Litvintseva AP, Beltran M, Chiller TM.

Clin Infect Dis. 2019 Jan 1;68(1):15-21. doi: 10.1093/cid/ciy411.


Weak vaccinia virus-induced NK cell regulation of CD4 T cells is associated with reduced NK cell differentiation and cytolytic activity.

Hatfield SD, Daniels KA, O'Donnell CL, Waggoner SN, Welsh RM.

Virology. 2018 Jun;519:131-144. doi: 10.1016/j.virol.2018.04.012. Epub 2018 Apr 30.


Candida auris for the clinical microbiology laboratory: Not your grandfather's Candida species.

Lockhart SR, Berkow EL, Chow N, Welsh RM.

Clin Microbiol Newsl. 2017 Jul 1;39(13):99-103. doi: 10.1016/j.clinmicnews.2017.06.003.


Severity of Acute Infectious Mononucleosis Correlates with Cross-Reactive Influenza CD8 T-Cell Receptor Repertoires.

Aslan N, Watkin LB, Gil A, Mishra R, Clark FG, Welsh RM, Ghersi D, Luzuriaga K, Selin LK.

MBio. 2017 Dec 5;8(6). pii: e01841-17. doi: 10.1128/mBio.01841-17.


Transient expression of ZBTB32 in anti-viral CD8+ T cells limits the magnitude of the effector response and the generation of memory.

Shin HM, Kapoor VN, Kim G, Li P, Kim HR, Suresh M, Kaech SM, Wherry EJ, Selin LK, Leonard WJ, Welsh RM, Berg LJ.

PLoS Pathog. 2017 Aug 21;13(8):e1006544. doi: 10.1371/journal.ppat.1006544. eCollection 2017 Aug.


Survival, Persistence, and Isolation of the Emerging Multidrug-Resistant Pathogenic Yeast Candida auris on a Plastic Health Care Surface.

Welsh RM, Bentz ML, Shams A, Houston H, Lyons A, Rose LJ, Litvintseva AP.

J Clin Microbiol. 2017 Oct;55(10):2996-3005. doi: 10.1128/JCM.00921-17. Epub 2017 Jul 26.


Modulation of let-7 miRNAs controls the differentiation of effector CD8 T cells.

Wells AC, Daniels KA, Angelou CC, Fagerberg E, Burnside AS, Markstein M, Alfandari D, Welsh RM, Pobezinskaya EL, Pobezinsky LA.

Elife. 2017 Jul 24;6. pii: e26398. doi: 10.7554/eLife.26398.


Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators.

Welsh RM, Rosales SM, Zaneveld JR, Payet JP, McMinds R, Hubbs SL, Vega Thurber RL.

PeerJ. 2017 May 31;5:e3315. doi: 10.7717/peerj.3315. eCollection 2017.


Notes from the Field: Ongoing Transmission of Candida auris in Health Care Facilities - United States, June 2016-May 2017.

Tsay S, Welsh RM, Adams EH, Chow NA, Gade L, Berkow EL, Poirot E, Lutterloh E, Quinn M, Chaturvedi S, Kerins J, Black SR, Kemble SK, Barrett PM; MSD, Barton K, Shannon DJ, Bradley K, Lockhart SR, Litvintseva AP, Moulton-Meissner H, Shugart A, Kallen A, Vallabhaneni S, Chiller TM, Jackson BR.

MMWR Morb Mortal Wkly Rep. 2017 May 19;66(19):514-515. doi: 10.15585/mmwr.mm6619a7. No abstract available.


Heterologous Immunity and Persistent Murine Cytomegalovirus Infection.

Che JW, Daniels KA, Selin LK, Welsh RM.

J Virol. 2017 Jan 3;91(2). pii: e01386-16. doi: 10.1128/JVI.01386-16. Print 2017 Jan 15.


Type 1 interferon licenses naïve CD8 T cells to mediate anti-viral cytotoxicity.

Urban SL, Berg LJ, Welsh RM.

Virology. 2016 Jun;493:52-9. doi: 10.1016/j.virol.2016.03.005. Epub 2016 Mar 19.


IRF4 Regulates the Ratio of T-Bet to Eomesodermin in CD8+ T Cells Responding to Persistent LCMV Infection.

Nayar R, Schutten E, Jangalwe S, Durost PA, Kenney LL, Conley JM, Daniels K, Brehm MA, Welsh RM, Berg LJ.

PLoS One. 2015 Dec 29;10(12):e0144826. doi: 10.1371/journal.pone.0144826. eCollection 2015.


Bacterial predation in a marine host-associated microbiome.

Welsh RM, Zaneveld JR, Rosales SM, Payet JP, Burkepile DE, Thurber RV.

ISME J. 2016 Jun;10(6):1540-4. doi: 10.1038/ismej.2015.219. Epub 2015 Nov 27.


The Mitochondrial Phosphatase PGAM5 Is Dispensable for Necroptosis but Promotes Inflammasome Activation in Macrophages.

Moriwaki K, Farias Luz N, Balaji S, De Rosa MJ, O'Donnell CL, Gough PJ, Bertin J, Welsh RM, Chan FK.

J Immunol. 2016 Jan 1;196(1):407-15. doi: 10.4049/jimmunol.1501662. Epub 2015 Nov 18.


Evaluation of non-reciprocal heterologous immunity between unrelated viruses.

Che JW, Selin LK, Welsh RM.

Virology. 2015 Aug;482:89-97. doi: 10.1016/j.virol.2015.03.002. Epub 2015 Mar 31.


Generation of cellular immune memory and B-cell immunity is impaired by natural killer cells.

Rydyznski C, Daniels KA, Karmele EP, Brooks TR, Mahl SE, Moran MT, Li C, Sutiwisesak R, Welsh RM, Waggoner SN.

Nat Commun. 2015 Feb 27;6:6375. doi: 10.1038/ncomms7375.


Regulatory T cells resist virus infection-induced apoptosis.

Che JW, Kraft AR, Selin LK, Welsh RM.

J Virol. 2015 Feb;89(4):2112-20. doi: 10.1128/JVI.02245-14. Epub 2014 Dec 3.


Out-of-sequence signal 3 as a mechanism for virus-induced immune suppression of CD8 T cell responses.

Urban SL, Welsh RM.

PLoS Pathog. 2014 Sep 25;10(9):e1004357. doi: 10.1371/journal.ppat.1004357. eCollection 2014 Sep.


MHC basis of T cell-dependent heterologous immunity to arenaviruses.

Daniels KA, Hatfield SD, Welsh RM, Brehm MA.

Virology. 2014 Sep;464-465:213-217. doi: 10.1016/j.virol.2014.07.012. Epub 2014 Aug 3.


Regulation of tissue-dependent differences in CD8+ T cell apoptosis during viral infection.

Kapoor VN, Shin HM, Cho OH, Berg LJ, Kang J, Welsh RM.

J Virol. 2014 Sep 1;88(17):9490-503. doi: 10.1128/JVI.01223-14. Epub 2014 Jun 18.


Graded levels of IRF4 regulate CD8+ T cell differentiation and expansion, but not attrition, in response to acute virus infection.

Nayar R, Schutten E, Bautista B, Daniels K, Prince AL, Enos M, Brehm MA, Swain SL, Welsh RM, Berg LJ.

J Immunol. 2014 Jun 15;192(12):5881-93. doi: 10.4049/jimmunol.1303187. Epub 2014 May 16.


Clonal exhaustion as a mechanism to protect against severe immunopathology and death from an overwhelming CD8 T cell response.

Cornberg M, Kenney LL, Chen AT, Waggoner SN, Kim SK, Dienes HP, Welsh RM, Selin LK.

Front Immunol. 2013 Dec 20;4:475. doi: 10.3389/fimmu.2013.00475. eCollection 2013.


Therapeutic depletion of natural killer cells controls persistent infection.

Waggoner SN, Daniels KA, Welsh RM.

J Virol. 2014 Feb;88(4):1953-60. doi: 10.1128/JVI.03002-13. Epub 2013 Nov 27.


Long-lasting T cell-independent IgG responses require MyD88-mediated pathways and are maintained by high levels of virus persistence.

Raval FM, Mishra R, Garcea RL, Welsh RM, Szomolanyi-Tsuda E.

MBio. 2013 Nov 5;4(6):e00812-13. doi: 10.1128/mBio.00812-13.


Disparate epitopes mediating protective heterologous immunity to unrelated viruses share peptide-MHC structural features recognized by cross-reactive T cells.

Shen ZT, Nguyen TT, Daniels KA, Welsh RM, Stern LJ.

J Immunol. 2013 Nov 15;191(10):5139-52. doi: 10.4049/jimmunol.1300852. Epub 2013 Oct 14.


Epigenetic modifications induced by Blimp-1 Regulate CD8⁺ T cell memory progression during acute virus infection.

Shin HM, Kapoor V, Guan T, Kaech SM, Welsh RM, Berg LJ.

Immunity. 2013 Oct 17;39(4):661-75. doi: 10.1016/j.immuni.2013.08.032. Epub 2013 Oct 10.


Inflammatory cytokine-mediated evasion of virus-induced tumors from NK cell control.

Mishra R, Polic B, Welsh RM, Szomolanyi-Tsuda E.

J Immunol. 2013 Jul 15;191(2):961-70. doi: 10.4049/jimmunol.1203328. Epub 2013 Jun 14.


Possible role of a cell surface carbohydrate in evolution of resistance to viral infections in old world primates.

Rodriguez IA, Welsh RM.

J Virol. 2013 Aug;87(15):8317-26. doi: 10.1128/JVI.01118-13. Epub 2013 Jun 5.


NK cells controlling virus-specific T cells: Rheostats for acute vs. persistent infections.

Welsh RM, Waggoner SN.

Virology. 2013 Jan 5;435(1):37-45. doi: 10.1016/j.virol.2012.10.005. Review.


Alloreactive CD8 T cells rescued from apoptosis during co-stimulation blockade by Toll-like receptor stimulation remain susceptible to Fas-induced cell death.

Priyadharshini B, Thornley TB, Daniels KA, Cuthbert A, Welsh RM, Greiner DL, Brehm MA.

Immunology. 2013 Apr;138(4):322-32. doi: 10.1111/imm.12044.


Global distribution of a wild alga revealed by targeted metagenomics.

Worden AZ, Janouskovec J, McRose D, Engman A, Welsh RM, Malfatti S, Tringe SG, Keeling PJ.

Curr Biol. 2012 Sep 11;22(17):R675-7. doi: 10.1016/j.cub.2012.07.054. No abstract available.


Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals.

Correa AM, Welsh RM, Vega Thurber RL.

ISME J. 2013 Jan;7(1):13-27. doi: 10.1038/ismej.2012.75. Epub 2012 Jul 12.


Loss of anti-viral immunity by infection with a virus encoding a cross-reactive pathogenic epitope.

Chen AT, Cornberg M, Gras S, Guillonneau C, Rossjohn J, Trees A, Emonet S, de la Torre JC, Welsh RM, Selin LK.

PLoS Pathog. 2012;8(4):e1002633. doi: 10.1371/journal.ppat.1002633. Epub 2012 Apr 19.


Increased protection from vaccinia virus infection in mice genetically prone to lymphoproliferative disorders.

Seedhom MO, Mathurin KS, Kim SK, Welsh RM.

J Virol. 2012 Jun;86(11):6010-22. doi: 10.1128/JVI.07176-11. Epub 2012 Mar 21.


Type 1 interferons and antiviral CD8 T-cell responses.

Welsh RM, Bahl K, Marshall HD, Urban SL.

PLoS Pathog. 2012 Jan;8(1):e1002352. doi: 10.1371/journal.ppat.1002352. Epub 2012 Jan 5. Review. No abstract available.


Mice completely lacking immunoproteasomes show major changes in antigen presentation.

Kincaid EZ, Che JW, York I, Escobar H, Reyes-Vargas E, Delgado JC, Welsh RM, Karow ML, Murphy AJ, Valenzuela DM, Yancopoulos GD, Rock KL.

Nat Immunol. 2011 Dec 25;13(2):129-35. doi: 10.1038/ni.2203.


Natural killer cells act as rheostats modulating antiviral T cells.

Waggoner SN, Cornberg M, Selin LK, Welsh RM.

Nature. 2011 Nov 20;481(7381):394-8. doi: 10.1038/nature10624.


Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges.

Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden AZ.

Environ Microbiol. 2012 Jan;14(1):162-76. doi: 10.1111/j.1462-2920.2011.02576.x. Epub 2011 Sep 14.


Differential distributions of synechococcus subgroups across the california current system.

Paerl RW, Johnson KS, Welsh RM, Worden AZ, Chavez FP, Zehr JP.

Front Microbiol. 2011 Apr 4;2:59. doi: 10.3389/fmicb.2011.00059. eCollection 2011.


Virus-induced transient immune suppression and the inhibition of T cell proliferation by type I interferon.

Marshall HD, Urban SL, Welsh RM.

J Virol. 2011 Jun;85(12):5929-39. doi: 10.1128/JVI.02516-10. Epub 2011 Apr 6.


Computer simulations of heterologous immunity: highlights of an interdisciplinary cooperation.

Calcagno C, Puzone R, Pearson YE, Cheng Y, Ghersi D, Selin LK, Welsh RM, Celada F.

Autoimmunity. 2011 Jun;44(4):304-14. doi: 10.3109/08916934.2010.523220. Epub 2011 Jan 27. Review.


Maturation-dependent licensing of naive T cells for rapid TNF production.

Priyadharshini B, Welsh RM, Greiner DL, Gerstein RM, Brehm MA.

PLoS One. 2010 Nov 24;5(11):e15038. doi: 10.1371/journal.pone.0015038.


Broad cross-reactive TCR repertoires recognizing dissimilar Epstein-Barr and influenza A virus epitopes.

Clute SC, Naumov YN, Watkin LB, Aslan N, Sullivan JL, Thorley-Lawson DA, Luzuriaga K, Welsh RM, Puzone R, Celada F, Selin LK.

J Immunol. 2010 Dec 1;185(11):6753-64. doi: 10.4049/jimmunol.1000812. Epub 2010 Nov 3.

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