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Boron Doped Diamond as a Low Biofouling Material in Aquatic Environments: Assessment of Pseudomonas aeruginosa Biofilm Formation.

Simcox LJ, Pereira RPA, Wellington EMH, Macpherson JV.

ACS Appl Mater Interfaces. 2019 Jul 17;11(28):25024-25033. doi: 10.1021/acsami.9b07245. Epub 2019 Jul 1.


Microbial community drivers of PK/NRP gene diversity in selected global soils.

Borsetto C, Amos GCA, da Rocha UN, Mitchell AL, Finn RD, Laidi RF, Vallin C, Pearce DA, Newsham KK, Wellington EMH.

Microbiome. 2019 May 22;7(1):78. doi: 10.1186/s40168-019-0692-8.


A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria.

Kim DW, Thawng CN, Lee K, Wellington EMH, Cha CJ.

Environ Int. 2019 Jun;127:206-215. doi: 10.1016/j.envint.2019.03.046. Epub 2019 Mar 28.


Editorial: The Search for Biological Active Agent(s) From Actinobacteria.

Lee LH, Chan KG, Stach J, Wellington EMH, Goh BH.

Front Microbiol. 2018 May 1;9:824. doi: 10.3389/fmicb.2018.00824. eCollection 2018. No abstract available.


Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance.

Larsson DGJ, Andremont A, Bengtsson-Palme J, Brandt KK, de Roda Husman AM, Fagerstedt P, Fick J, Flach CF, Gaze WH, Kuroda M, Kvint K, Laxminarayan R, Manaia CM, Nielsen KM, Plant L, Ploy MC, Segovia C, Simonet P, Smalla K, Snape J, Topp E, van Hengel AJ, Verner-Jeffreys DW, Virta MPJ, Wellington EM, Wernersson AS.

Environ Int. 2018 Aug;117:132-138. doi: 10.1016/j.envint.2018.04.041. Epub 2018 May 7.


The widespread dissemination of integrons throughout bacterial communities in a riverine system.

Amos GCA, Ploumakis S, Zhang L, Hawkey PM, Gaze WH, Wellington EMH.

ISME J. 2018 Mar;12(3):681-691. doi: 10.1038/s41396-017-0030-8. Epub 2018 Jan 26.


100 Days of marine Synechococcus-Ruegeria pomeroyi interaction: A detailed analysis of the exoproteome.

Kaur A, Hernandez-Fernaud JR, Aguilo-Ferretjans MDM, Wellington EM, Christie-Oleza JA.

Environ Microbiol. 2018 Feb;20(2):785-799. doi: 10.1111/1462-2920.14012. Epub 2017 Dec 15.


Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation.

Lidbury IDEA, Murphy ARJ, Fraser TD, Bending GD, Jones AME, Moore JD, Goodall A, Tibbett M, Hammond JP, Scanlan DJ, Wellington EMH.

Sci Rep. 2017 May 19;7(1):2179. doi: 10.1038/s41598-017-02327-6.


The 'known' genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils.

Lidbury IDEA, Fraser T, Murphy ARJ, Scanlan DJ, Bending GD, Jones AME, Moore JD, Goodall A, Tibbett M, Hammond JP, Wellington EMH.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.474. Epub 2017 Apr 16.


Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape.

King HC, Khera-Butler T, James P, Oakley BB, Erenso G, Aseffa A, Knight R, Wellington EM, Courtenay O.

PLoS One. 2017 Mar 23;12(3):e0173811. doi: 10.1371/journal.pone.0173811. eCollection 2017.


Expanding the Repertoire of Carbapenem-Hydrolyzing Metallo-ß-Lactamases by Functional Metagenomic Analysis of Soil Microbiota.

Gudeta DD, Bortolaia V, Pollini S, Docquier JD, Rossolini GM, Amos GC, Wellington EM, Guardabassi L.

Front Microbiol. 2016 Dec 26;7:1985. doi: 10.3389/fmicb.2016.01985. eCollection 2016.


Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community.

Lehmann K, Bell T, Bowes MJ, Amos GCA, Gaze WH, Wellington EMH, Singer AC.

Water Res. 2016 Dec 1;106:163-170. doi: 10.1016/j.watres.2016.09.035. Epub 2016 Sep 20.


Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons.

Cleary DW, Bishop AH, Zhang L, Topp E, Wellington EM, Gaze WH.

FEMS Microbiol Ecol. 2016 Oct;92(10). pii: fiw159. doi: 10.1093/femsec/fiw159. Epub 2016 Aug 5.


Structural and Biochemical Characterization of Rm3, a Subclass B3 Metallo-β-Lactamase Identified from a Functional Metagenomic Study.

Salimraj R, Zhang L, Hinchliffe P, Wellington EM, Brem J, Schofield CJ, Gaze WH, Spencer J.

Antimicrob Agents Chemother. 2016 Sep 23;60(10):5828-40. doi: 10.1128/AAC.00750-16. Print 2016 Oct.


Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria.

Lidbury ID, Murphy AR, Scanlan DJ, Bending GD, Jones AM, Moore JD, Goodall A, Hammond JP, Wellington EM.

Environ Microbiol. 2016 Oct;18(10):3535-3549. doi: 10.1111/1462-2920.13390. Epub 2016 Jul 7.


Erratum for Gudeta et al., The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing β-Lactamases of Potential Clinical Relevance.

Gudeta DD, Bortolaia V, Amos G, Wellington EM, Brandt KK, Poirel L, Nielsen JB, Westh H, Guardabassi L.

Antimicrob Agents Chemother. 2016 Mar 25;60(4):2599. doi: 10.1128/AAC.00375-16. Print 2016 Apr. No abstract available.


Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils.

Muzafar M, Green LE, Calvo-Bado LA, Tichauer E, King H, James P, Wellington EMH.

Anaerobe. 2016 Apr;38:81-87. doi: 10.1016/j.anaerobe.2015.12.010. Epub 2015 Dec 30.


The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing β-Lactamases of Potential Clinical Relevance.

Gudeta DD, Bortolaia V, Amos G, Wellington EM, Brandt KK, Poirel L, Nielsen JB, Westh H, Guardabassi L.

Antimicrob Agents Chemother. 2015 Oct 19;60(1):151-60. doi: 10.1128/AAC.01424-15. Print 2016 Jan. Erratum in: Antimicrob Agents Chemother. 2016 Apr;60(4):2599.


Designing and Implementing an Assay for the Detection of Rare and Divergent NRPS and PKS Clones in European, Antarctic and Cuban Soils.

Amos GC, Borsetto C, Laskaris P, Krsek M, Berry AE, Newsham KK, Calvo-Bado L, Pearce DA, Vallin C, Wellington EM.

PLoS One. 2015 Sep 23;10(9):e0138327. doi: 10.1371/journal.pone.0138327. eCollection 2015.


The variability and seasonality of the environmental reservoir of Mycobacterium bovis shed by wild European badgers.

King HC, Murphy A, James P, Travis E, Porter D, Hung YJ, Sawyer J, Cork J, Delahay RJ, Gaze W, Courtenay O, Wellington EM.

Sci Rep. 2015 Aug 6;5:12318. doi: 10.1038/srep12318.


Performance of a Noninvasive Test for Detecting Mycobacterium bovis Shedding in European Badger (Meles meles) Populations.

King HC, Murphy A, James P, Travis E, Porter D, Sawyer J, Cork J, Delahay RJ, Gaze W, Courtenay O, Wellington EM.

J Clin Microbiol. 2015 Jul;53(7):2316-23. doi: 10.1128/JCM.00762-15. Epub 2015 Jun 3.


Mining for Nonribosomal Peptide Synthetase and Polyketide Synthase Genes Revealed a High Level of Diversity in the Sphagnum Bog Metagenome.

Müller CA, Oberauner-Wappis L, Peyman A, Amos GC, Wellington EM, Berg G.

Appl Environ Microbiol. 2015 Aug;81(15):5064-72. doi: 10.1128/AEM.00631-15. Epub 2015 May 22.


The role of the environment in transmission of Dichelobacter nodosus between ewes and their lambs.

Muzafar M, Calvo-Bado LA, Green LE, Smith EM, Russell CL, Grogono-Thomas R, Wellington EM.

Vet Microbiol. 2015 Aug 31;179(1-2):53-9. doi: 10.1016/j.vetmic.2015.04.010. Epub 2015 Apr 22.


First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH).

Witcomb LA, Green LE, Calvo-Bado LA, Russell CL, Smith EM, Grogono-Thomas R, Wellington EM.

Vet Microbiol. 2015 Apr 17;176(3-4):321-7. doi: 10.1016/j.vetmic.2015.01.022. Epub 2015 Feb 9.


The hidden resistome of retail chicken meat.

Amos GC, Carter A, Hawkey PM, Gaze WH, Wellington EM.

J Glob Antimicrob Resist. 2015 Mar;3(1):44-46. doi: 10.1016/j.jgar.2014.11.003. Epub 2015 Jan 14. No abstract available.


Validated predictive modelling of the environmental resistome.

Amos GC, Gozzard E, Carter CE, Mead A, Bowes MJ, Hawkey PM, Zhang L, Singer AC, Gaze WH, Wellington EM.

ISME J. 2015 Jun;9(6):1467-76. doi: 10.1038/ismej.2014.237. Epub 2015 Feb 13.


Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics.

Johnson-Rollings AS, Wright H, Masciandaro G, Macci C, Doni S, Calvo-Bado LA, Slade SE, Vallin Plou C, Wellington EM.

ISME J. 2014 Oct;8(10):2148-50. doi: 10.1038/ismej.2014.130. Epub 2014 Jul 18.


Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara Soils.

Selama O, Amos GC, Djenane Z, Borsetto C, Laidi RF, Porter D, Nateche F, Wellington EM, Hacène H.

Biomed Res Int. 2014;2014:317524. doi: 10.1155/2014/317524. Epub 2014 May 27.


Dynamics and impact of footrot and climate on hoof horn length in 50 ewes from one farm over a period of 10 months.

Smith EM, Green OD, Calvo-Bado LA, Witcomb LA, Grogono-Thomas R, Russell CL, Brown JC, Medley GF, KilBride AL, Wellington EM, Green LE.

Vet J. 2014 Sep;201(3):295-301. doi: 10.1016/j.tvjl.2014.05.021. Epub 2014 May 23.


Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment.

Amos GC, Hawkey PM, Gaze WH, Wellington EM.

J Antimicrob Chemother. 2014 Jul;69(7):1785-91. doi: 10.1093/jac/dku079. Epub 2014 May 5.


A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep.

Witcomb LA, Green LE, Kaler J, Ul-Hassan A, Calvo-Bado LA, Medley GF, Grogono-Thomas R, Wellington EM.

Prev Vet Med. 2014 Jul 1;115(1-2):48-55. doi: 10.1016/j.prevetmed.2014.03.004. Epub 2014 Mar 16.


Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes.

Amos GC, Zhang L, Hawkey PM, Gaze WH, Wellington EM.

Vet Microbiol. 2014 Jul 16;171(3-4):441-7. doi: 10.1016/j.vetmic.2014.02.017. Epub 2014 Feb 16.


Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats.

Dealtry S, Ding GC, Weichelt V, Dunon V, Schlüter A, Martini MC, Del Papa MF, Lagares A, Amos GC, Wellington EM, Gaze WH, Sipkema D, Sjöling S, Springael D, Heuer H, van Elsas JD, Thomas C, Smalla K.

PLoS One. 2014 Feb 24;9(2):e89922. doi: 10.1371/journal.pone.0089922. eCollection 2014.


The world bacterial biogeography and biodiversity through databases: a case study of NCBI Nucleotide Database and GBIF Database.

Selama O, James P, Nateche F, Wellington EM, Hacène H.

Biomed Res Int. 2013;2013:240175. doi: 10.1155/2013/240175. Epub 2013 Oct 21.


Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.


Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity.

Pontiroli A, Khera TT, Oakley BB, Mason S, Dowd SE, Travis ER, Erenso G, Aseffa A, Courtenay O, Wellington EM.

PLoS One. 2013 Jul 18;8(7):e68648. doi: 10.1371/journal.pone.0068648. Print 2013.


Influence of humans on evolution and mobilization of environmental antibiotic resistome.

Gaze WH, Krone SM, Larsson DG, Li XZ, Robinson JA, Simonet P, Smalla K, Timinouni M, Topp E, Wellington EM, Wright GD, Zhu YG.

Emerg Infect Dis. 2013 Jul;19(7). doi: 10.3201/eid1907.120871.


Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements.

Russell CL, Smith EM, Calvo-Bado LA, Green LE, Wellington EM, Medley GF, Moore LJ, Grogono-Thomas R.

Infect Genet Evol. 2014 Mar;22:273-9. doi: 10.1016/j.meegid.2013.05.026. Epub 2013 Jun 7.


The role of the natural environment in the emergence of antibiotic resistance in gram-negative bacteria.

Wellington EM, Boxall AB, Cross P, Feil EJ, Gaze WH, Hawkey PM, Johnson-Rollings AS, Jones DL, Lee NM, Otten W, Thomas CM, Williams AP.

Lancet Infect Dis. 2013 Feb;13(2):155-65. doi: 10.1016/S1473-3099(12)70317-1. Review.


Metagenomic analysis of a southern maritime antarctic soil.

Pearce DA, Newsham KK, Thorne MA, Calvo-Bado L, Krsek M, Laskaris P, Hodson A, Wellington EM.

Front Microbiol. 2012 Dec 5;3:403. doi: 10.3389/fmicb.2012.00403. eCollection 2012.


Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor.

Martín JF, Santos-Beneit F, Rodríguez-García A, Sola-Landa A, Smith MC, Ellingsen TE, Nieselt K, Burroughs NJ, Wellington EM.

Appl Microbiol Biotechnol. 2012 Jul;95(1):61-75. doi: 10.1007/s00253-012-4129-6. Epub 2012 May 24. Review.


Diversity analysis of streptomycetes and associated phosphotranspherase genes in soil.

Laskaris P, Sekine T, Wellington EM.

PLoS One. 2012;7(4):e35756. doi: 10.1371/journal.pone.0035756. Epub 2012 Apr 23.


Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture.

Thomas L, Hodgson DA, Wentzel A, Nieselt K, Ellingsen TE, Moore J, Morrissey ER, Legaie R; STREAM Consortium, Wohlleben W, Rodríguez-García A, Martín JF, Burroughs NJ, Wellington EM, Smith MC.

Mol Cell Proteomics. 2012 Feb;11(2):M111.013797. doi: 10.1074/mcp.M111.013797. Epub 2011 Dec 6.


An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of Mycobacterium bovis.

Travis ER, Gaze WH, Pontiroli A, Sweeney FP, Porter D, Mason S, Keeling MJ, Jones RM, Sawyer J, Aranaz A, Rizaldos EC, Cork J, Delahay RJ, Wilson GJ, Hewinson RG, Courtenay O, Wellington EM.

PLoS One. 2011;6(11):e27369. doi: 10.1371/journal.pone.0027369. Epub 2011 Nov 14.


Enterotoxin-producing staphylococci cause intestinal inflammation by a combination of direct epithelial cytopathy and superantigen-mediated T-cell activation.

Edwards LA, O'Neill C, Furman MA, Hicks S, Torrente F, Pérez-Machado M, Wellington EM, Phillips AD, Murch SH.

Inflamm Bowel Dis. 2012 Apr;18(4):624-40. doi: 10.1002/ibd.21852. Epub 2011 Sep 1.


Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images.

Tsibidis GD, Burroughs NJ, Gaze W, Wellington EM.

Micron. 2011 Dec;42(8):911-20. doi: 10.1016/j.micron.2011.06.010. Epub 2011 Jul 1.


Mimivirus-like particles in acanthamoebae from Sewage Sludge.

Gaze WH, Morgan G, Zhang L, Wellington EM.

Emerg Infect Dis. 2011 Jun;17(6):1127-9. doi: 10.3201/eid/1706.101282. No abstract available.


Meticillin-resistant Staphylococcus aureus in pigs from Thailand.

Anukool U, O'Neill CE, Butr-Indr B, Hawkey PM, Gaze WH, Wellington EM.

Int J Antimicrob Agents. 2011 Jul;38(1):86-7. doi: 10.1016/j.ijantimicag.2011.02.018. Epub 2011 May 8. No abstract available.


Pathogen quantitation in complex matrices: a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition.

Pontiroli A, Travis ER, Sweeney FP, Porter D, Gaze WH, Mason S, Hibberd V, Holden J, Courtenay O, Wellington EM.

PLoS One. 2011 Mar 23;6(3):e17916. doi: 10.1371/journal.pone.0017916.


Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome.

Calvo-Bado LA, Oakley BB, Dowd SE, Green LE, Medley GF, Ul-Hassan A, Bateman V, Gaze W, Witcomb L, Grogono-Thomas R, Kaler J, Russell CL, Wellington EM.

ISME J. 2011 Sep;5(9):1426-37. doi: 10.1038/ismej.2011.25. Epub 2011 Mar 24.

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