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Wolbachia, Cardinium and climate: an analysis of global data.

Charlesworth J, Weinert LA, Araujo EV Jr, Welch JJ.

Biol Lett. 2019 Aug 30;15(8):20190273. doi: 10.1098/rsbl.2019.0273. Epub 2019 Aug 21.


Langerhans Cell Histiocytosis in the Pediatric Population: Treatment of Isolated Craniofacial Lesions.

Gargano F, Welch JJ, Klinge PM, Sullivan SR, Taylor HO.

J Craniofac Surg. 2019 Jun;30(4):1191-1193. doi: 10.1097/SCS.0000000000005249.


Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.

Gossmann TI, Shanmugasundram A, Börno S, Duvaux L, Lemaire C, Kuhl H, Klages S, Roberts LD, Schade S, Gostner JM, Hildebrand F, Vowinckel J, Bichet C, Mülleder M, Calvani E, Zelezniak A, Griffin JL, Bork P, Allaine D, Cohas A, Welch JJ, Timmermann B, Ralser M.

Curr Biol. 2019 May 20;29(10):1712-1720.e7. doi: 10.1016/j.cub.2019.04.020. Epub 2019 May 9.


The distribution of epistasis on simple fitness landscapes.

Fraïsse C, Welch JJ.

Biol Lett. 2019 Apr 26;15(4):20180881. doi: 10.1098/rsbl.2018.0881.


Advancing Cancer Research in Africa Through Early-Career Awards: The BIG Cat Initiative.

Vogel AL, Freeman JA, Duncan K, Alaro J, Welch JJ, Rodrigues B, Vanderpuye V, Harford JB, Williams M.

J Glob Oncol. 2019 Apr;5:1-8. doi: 10.1200/JGO.18.00223.


Coadapted genomes and selection on hybrids: Fisher's geometric model explains a variety of empirical patterns.

Simon A, Bierne N, Welch JJ.

Evol Lett. 2018 Aug 14;2(5):472-498. doi: 10.1002/evl3.66. eCollection 2018 Oct.


In Regard to Beadle and Anderson.

Le QT, Yom SS, Wee JTS, Lee AWM, Grau C, Grégoire V, Porceddu S, Welch JJ, Mehanna H.

Int J Radiat Oncol Biol Phys. 2018 Sep 1;102(1):229-230. doi: 10.1016/j.ijrobp.2018.05.015. Epub 2018 Aug 8. No abstract available.


The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies.

Fraïsse C, Roux C, Gagnaire PA, Romiguier J, Faivre N, Welch JJ, Bierne N.

PeerJ. 2018 Jul 30;6:e5198. doi: 10.7717/peerj.5198. eCollection 2018.


Refining risk classification in childhood B acute lymphoblastic leukemia: results of DFCI ALL Consortium Protocol 05-001.

Vrooman LM, Blonquist TM, Harris MH, Stevenson KE, Place AE, Hunt SK, O'Brien JE, Asselin BL, Athale UH, Clavell LA, Cole PD, Kelly KM, Laverdiere C, Leclerc JM, Michon B, Schorin MA, Sulis ML, Welch JJG, Neuberg DS, Sallan SE, Silverman LB.

Blood Adv. 2018 Jun 26;2(12):1449-1458. doi: 10.1182/bloodadvances.2018016584.


Outcome of children and adolescents with Down syndrome treated on Dana-Farber Cancer Institute Acute Lymphoblastic Leukemia Consortium protocols 00-001 and 05-001.

Athale UH, Puligandla M, Stevenson KE, Asselin B, Clavell LA, Cole PD, Kelly KM, Laverdiere C, Leclerc JM, Michon B, Schorin MA, Sulis ML, Welch JJG, Harris MH, Neuberg DS, Sallan SE, Silverman LB.

Pediatr Blood Cancer. 2018 Oct;65(10):e27256. doi: 10.1002/pbc.27256. Epub 2018 Jun 7.


Prognostic impact of kinase-activating fusions and IKZF1 deletions in pediatric high-risk B-lineage acute lymphoblastic leukemia.

Tran TH, Harris MH, Nguyen JV, Blonquist TM, Stevenson KE, Stonerock E, Asselin BL, Athale UH, Clavell LA, Cole PD, Kelly KM, Laverdiere C, Leclerc JM, Michon B, Schorin MA, Welch JJG, Reshmi SC, Neuberg DS, Sallan SE, Loh ML, Silverman LB.

Blood Adv. 2018 Mar 13;2(5):529-533. doi: 10.1182/bloodadvances.2017014704.


Epstein-Barr virus DNA in serum as an early prognostic marker in children and adolescents with Hodgkin lymphoma.

Welch JJG, Schwartz CL, Higman M, Chen L, Buxton A, Kanakry JA, Kahwash SB, Hutchison RE, Friedman DL, Ambinder RF.

Blood Adv. 2017 Apr 24;1(11):681-684. doi: 10.1182/bloodadvances.2016002618. eCollection 2017 Apr 25.


In Reply to Zoto Mustafayev and Ozyar.

Le QT, Yom SS, Ng RHW, Bratman SV, Welch JJ, Chan KCA, Kim KY.

Int J Radiat Oncol Biol Phys. 2017 Dec 1;99(5):1307. doi: 10.1016/j.ijrobp.2017.08.036. No abstract available.


An investigation of toxicities and survival in Hispanic children and adolescents with ALL: Results from the Dana-Farber Cancer Institute ALL Consortium protocol 05-001.

Kahn JM, Cole PD, Blonquist TM, Stevenson K, Jin Z, Barrera S, Davila R, Roberts E, Neuberg DS, Athale UH, Clavell LA, Laverdiere C, Leclerc JM, Michon B, Schorin MA, Welch JJG, Sallan SE, Silverman LB, Kelly KM.

Pediatr Blood Cancer. 2018 Mar;65(3). doi: 10.1002/pbc.26871. Epub 2017 Nov 1.


Why Might Bacterial Pathogens Have Small Genomes?

Weinert LA, Welch JJ.

Trends Ecol Evol. 2017 Dec;32(12):936-947. doi: 10.1016/j.tree.2017.09.006. Epub 2017 Oct 17. Review.


Clinical Utility of Epstein-Barr Virus DNA Testing in the Treatment of Nasopharyngeal Carcinoma Patients.

Kim KY, Le QT, Yom SS, Ng RHW, Chan KCA, Bratman SV, Welch JJ, Divi RL, Petryshyn RA, Conley BA.

Int J Radiat Oncol Biol Phys. 2017 Aug 1;98(5):996-1001. doi: 10.1016/j.ijrobp.2017.03.018. Epub 2017 Mar 18. Review.


Formation of an international intergroup to coordinate clinical trials in head and neck cancers: HNCIG.

Le QT, Welch JJ, Vermorken JB, Rischin D, Mehanna H; all HNCIG investigators.

Oral Oncol. 2017 Aug;71:180-183. doi: 10.1016/j.oraloncology.2017.05.022. Epub 2017 Jun 22.


Understanding predictors of continued long-term pediatric cancer care across the region: A report from the Consortium for New England Childhood Cancer Survivors.

Welch JJG, Kenney LB, Hirway P, Usmani GN, Kadan-Lottick N, Grewal SS, Huang M, Bradeen H, Ader J, Diller L, Schwartz CL.

Pediatr Blood Cancer. 2017 Oct;64(10). doi: 10.1002/pbc.26564. Epub 2017 Apr 28.


Two cases of humoral hypercalcemia of malignancy complicating infantile fibrosarcoma.

Hirschfeld R, Welch JJG, Harrison DJ, Kremsdorf R, Chawla A.

Pediatr Blood Cancer. 2017 Oct;64(10). doi: 10.1002/pbc.26511. Epub 2017 Mar 29.


What's wrong with evolutionary biology?

Welch JJ.

Biol Philos. 2017;32(2):263-279. doi: 10.1007/s10539-016-9557-8. Epub 2016 Dec 20.


The evolution, diversity, and host associations of rhabdoviruses.

Longdon B, Murray GG, Palmer WJ, Day JP, Parker DJ, Welch JJ, Obbard DJ, Jiggins FM.

Virus Evol. 2015 Nov 13;1(1):vev014. eCollection 2015.


How Variable Is Our Delivery of Information? Approaches to Patient Education About Oral Chemotherapy in the Pediatric Oncology Clinic.

Kahn JM, Athale UH, Clavell LA, Cole PD, Leclerc JM, Laverdiere C, Michon B, Schorin MA, Welch JJ, Sallan SE, Silverman LB, Kelly KM.

J Pediatr Health Care. 2017 Jan - Feb;31(1):e1-e6. doi: 10.1016/j.pedhc.2016.06.004. Epub 2016 Jul 25.


Functional Delivery of siRNA by Disulfide-Constrained Cyclic Amphipathic Peptides.

Welch JJ, Swanekamp RJ, King C, Dean DA, Nilsson BL.

ACS Med Chem Lett. 2016 Mar 30;7(6):584-9. doi: 10.1021/acsmedchemlett.6b00031. eCollection 2016 Jun 9.


The genetics of speciation: Insights from Fisher's geometric model.

Fraïsse C, Gunnarsson PA, Roze D, Bierne N, Welch JJ.

Evolution. 2016 Jul;70(7):1450-64. doi: 10.1111/evo.12968. Epub 2016 Jul 5.


The effect of genetic structure on molecular dating and tests for temporal signal.

Murray GG, Wang F, Harrison EM, Paterson GK, Mather AE, Harris SR, Holmes MA, Rambaut A, Welch JJ.

Methods Ecol Evol. 2016 Jan;7(1):80-89. Epub 2015 Sep 22.


Rare Pediatric Non-Hodgkin Lymphomas: A Report From Children's Oncology Group Study ANHL 04B1.

O'Suoji C, Welch JJ, Perkins SL, Smith LM, Weitzman S, Simko SJ, Galardy PJ, Bollard CM, Gross TG, Termuhlen AM.

Pediatr Blood Cancer. 2016 May;63(5):794-800. doi: 10.1002/pbc.25881. Epub 2016 Jan 5.


The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution?

Murray GG, Weinert LA, Rhule EL, Welch JJ.

Syst Biol. 2016 Mar;65(2):265-79. doi: 10.1093/sysbio/syv084. Epub 2015 Nov 11.


Intravenous pegylated asparaginase versus intramuscular native Escherichia coli L-asparaginase in newly diagnosed childhood acute lymphoblastic leukaemia (DFCI 05-001): a randomised, open-label phase 3 trial.

Place AE, Stevenson KE, Vrooman LM, Harris MH, Hunt SK, O'Brien JE, Supko JG, Asselin BL, Athale UH, Clavell LA, Cole PD, Kelly KM, Laverdiere C, Leclerc JM, Michon B, Schorin MA, Welch JJ, Lipshultz SE, Kutok JL, Blonquist TM, Neuberg DS, Sallan SE, Silverman LB.

Lancet Oncol. 2015 Dec;16(16):1677-90. doi: 10.1016/S1470-2045(15)00363-0. Epub 2015 Nov 6.


The National Clinical Trials Network: Conducting Successful Clinical Trials of New Therapies for Rare Cancers.

Schott AF, Welch JJ, Verschraegen CF, Kurzrock R.

Semin Oncol. 2015 Oct;42(5):731-9. doi: 10.1053/j.seminoncol.2015.07.010. Epub 2015 Jul 10. Review.


Wolbachia in butterflies and moths: geographic structure in infection frequency.

Ahmed MZ, Araujo-Jnr EV, Welch JJ, Kawahara AY.

Front Zool. 2015 Jul 16;12:16. doi: 10.1186/s12983-015-0107-z. eCollection 2015.


Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels.

Fraïsse C, Belkhir K, Welch JJ, Bierne N.

Mol Ecol. 2016 Jan;25(1):269-86. doi: 10.1111/mec.13299. Epub 2015 Jul 30.


The incidence of bacterial endosymbionts in terrestrial arthropods.

Weinert LA, Araujo-Jnr EV, Ahmed MZ, Welch JJ.

Proc Biol Sci. 2015 May 22;282(1807):20150249. doi: 10.1098/rspb.2015.0249.


Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission.

Paterson GK, Harrison EM, Murray GGR, Welch JJ, Warland JH, Holden MTG, Morgan FJE, Ba X, Koop G, Harris SR, Maskell DJ, Peacock SJ, Herrtage ME, Parkhill J, Holmes MA.

Nat Commun. 2015 Mar 27;6:6560. doi: 10.1038/ncomms7560.


Rates of vaccine evolution show strong effects of latency: implications for varicella zoster virus epidemiology.

Weinert LA, Depledge DP, Kundu S, Gershon AA, Nichols RA, Balloux F, Welch JJ, Breuer J.

Mol Biol Evol. 2015 Apr;32(4):1020-8. doi: 10.1093/molbev/msu406. Epub 2015 Jan 6.


Clinical trial designs for rare diseases: studies developed and discussed by the International Rare Cancers Initiative.

Bogaerts J, Sydes MR, Keat N, McConnell A, Benson A, Ho A, Roth A, Fortpied C, Eng C, Peckitt C, Coens C, Pettaway C, Arnold D, Hall E, Marshall E, Sclafani F, Hatcher H, Earl H, Ray-Coquard I, Paul J, Blay JY, Whelan J, Panageas K, Wheatley K, Harrington K, Licitra L, Billingham L, Hensley M, McCabe M, Patel PM, Carvajal R, Wilson R, Glynne-Jones R, McWilliams R, Leyvraz S, Rao S, Nicholson S, Filiaci V, Negrouk A, Lacombe D, Dupont E, Pauporté I, Welch JJ, Law K, Trimble T, Seymour M.

Eur J Cancer. 2015 Feb;51(3):271-81. doi: 10.1016/j.ejca.2014.10.027. Epub 2014 Dec 24. Review.


Consensus report of a joint NCI thoracic malignancies steering committee: FDA workshop on strategies for integrating biomarkers into clinical development of new therapies for lung cancer leading to the inception of "master protocols" in lung cancer.

Malik SM, Pazdur R, Abrams JS, Socinski MA, Sause WT, Harpole DH Jr, Welch JJ, Korn EL, Ullmann CD, Hirsch FR.

J Thorac Oncol. 2014 Oct;9(10):1443-8. doi: 10.1097/JTO.0000000000000314.


The evolution and genetics of virus host shifts.

Longdon B, Brockhurst MA, Russell CA, Welch JJ, Jiggins FM.

PLoS Pathog. 2014 Nov 6;10(11):e1004395. doi: 10.1371/journal.ppat.1004395. eCollection 2014 Nov. Review.


Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections.

Armitage AE, Deforche K, Welch JJ, Van Laethem K, Camacho R, Rambaut A, Iversen AK.

J Virol. 2014 Nov;88(21):12882-94. doi: 10.1128/JVI.01460-14. Epub 2014 Aug 27.


Standing and flowing: the complex origins of adaptive variation.

Welch JJ, Jiggins CD.

Mol Ecol. 2014 Aug;23(16):3935-7. doi: 10.1111/mec.12859.


Proteolytic stability of amphipathic peptide hydrogels composed of self-assembled pleated β-sheet or coassembled rippled β-sheet fibrils.

Swanekamp RJ, Welch JJ, Nilsson BL.

Chem Commun (Camb). 2014 Sep 11;50(70):10133-6. doi: 10.1039/c4cc04644g.


Inferring host range dynamics from comparative data: the protozoan parasites of new world monkeys.

Waxman D, Weinert LA, Welch JJ.

Am Nat. 2014 Jul;184(1):65-74. doi: 10.1086/676589. Epub 2014 Jun 3.


National Cancer Institute's Precision Medicine Initiatives for the new National Clinical Trials Network.

Abrams J, Conley B, Mooney M, Zwiebel J, Chen A, Welch JJ, Takebe N, Malik S, McShane L, Korn E, Williams M, Staudt L, Doroshow J.

Am Soc Clin Oncol Educ Book. 2014:71-6. doi: 10.14694/EdBook_AM.2014.34.71. Review.


A shared population of epidemic methicillin-resistant Staphylococcus aureus 15 circulates in humans and companion animals.

Harrison EM, Weinert LA, Holden MT, Welch JJ, Wilson K, Morgan FJ, Harris SR, Loeffler A, Boag AK, Peacock SJ, Paterson GK, Waller AS, Parkhill J, Holmes MA.

MBio. 2014 May 13;5(3):e00985-13. doi: 10.1128/mBio.00985-13.


Gene-flow in a mosaic hybrid zone: is local introgression adaptive?

Fraïsse C, Roux C, Welch JJ, Bierne N.

Genetics. 2014 Jul;197(3):939-51. doi: 10.1534/genetics.114.161380. Epub 2014 Apr 29.


The genetics of speciation: are complex incompatibilities easier to evolve?

Fraïsse C, Elderfield JA, Welch JJ.

J Evol Biol. 2014 Apr;27(4):688-99. doi: 10.1111/jeb.12339. Epub 2014 Mar 3.


Pervasive selection or is it…? Why are FST outliers sometimes so frequent?

Bierne N, Roze D, Welch JJ.

Mol Ecol. 2013 Apr;22(8):2061-4.


Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.

Richardson MF, Weinert LA, Welch JJ, Linheiro RS, Magwire MM, Jiggins FM, Bergman CM.

PLoS Genet. 2012;8(12):e1003129. doi: 10.1371/journal.pgen.1003129. Epub 2012 Dec 20.


Relaxed phylogenetics and the palaeoptera problem: resolving deep ancestral splits in the insect phylogeny.

Thomas JA, Trueman JW, Rambaut A, Welch JJ.

Syst Biol. 2013 Mar;62(2):285-97. doi: 10.1093/sysbio/sys093. Epub 2012 Dec 5.


Hidden epistastic interactions can favour the evolution of sex and recombination.

Peck JR, Waxman D, Welch JJ.

PLoS One. 2012;7(11):e48382. doi: 10.1371/journal.pone.0048382. Epub 2012 Nov 21.


Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication.

Weinert LA, Welch JJ, Suchard MA, Lemey P, Rambaut A, Fitzgerald JR.

Biol Lett. 2012 Oct 23;8(5):829-32. doi: 10.1098/rsbl.2012.0290. Epub 2012 May 23.

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