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Items: 12

1.

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL Jr.

PLoS Comput Biol. 2018 Apr 27;14(4):e1006112. doi: 10.1371/journal.pcbi.1006112. eCollection 2018 Apr.

2.

I am a United Academic Worker.

Weitzner BD.

Science. 2017 Oct 13;358(6360):266. doi: 10.1126/science.358.6360.266. No abstract available.

PMID:
29026045
3.

Modeling and docking of antibody structures with Rosetta.

Weitzner BD, Jeliazkov JR, Lyskov S, Marze N, Kuroda D, Frick R, Adolf-Bryfogle J, Biswas N, Dunbrack RL Jr, Gray JJ.

Nat Protoc. 2017 Feb;12(2):401-416. doi: 10.1038/nprot.2016.180. Epub 2017 Jan 26.

4.

Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint.

Weitzner BD, Gray JJ.

J Immunol. 2017 Jan 1;198(1):505-515. Epub 2016 Nov 21.

5.

A Framework to Simplify Combined Sampling Strategies in Rosetta.

Porter JR, Weitzner BD, Lange OF.

PLoS One. 2015 Sep 18;10(9):e0138220. doi: 10.1371/journal.pone.0138220. eCollection 2015.

6.

An Integrated Framework Advancing Membrane Protein Modeling and Design.

Alford RF, Koehler Leman J, Weitzner BD, Duran AM, Tilley DC, Elazar A, Gray JJ.

PLoS Comput Biol. 2015 Sep 1;11(9):e1004398. doi: 10.1371/journal.pcbi.1004398. eCollection 2015 Sep.

7.

The origin of CDR H3 structural diversity.

Weitzner BD, Dunbrack RL Jr, Gray JJ.

Structure. 2015 Feb 3;23(2):302-11. doi: 10.1016/j.str.2014.11.010. Epub 2015 Jan 8.

8.

Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.

Weitzner BD, Kuroda D, Marze N, Xu J, Gray JJ.

Proteins. 2014 Aug;82(8):1611-23. doi: 10.1002/prot.24534. Epub 2014 Mar 31.

9.

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R.

PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013.

10.

Real-time PyMOL visualization for Rosetta and PyRosetta.

Baugh EH, Lyskov S, Weitzner BD, Gray JJ.

PLoS One. 2011;6(8):e21931. doi: 10.1371/journal.pone.0021931. Epub 2011 Aug 16.

11.

Benchmarking and analysis of protein docking performance in Rosetta v3.2.

Chaudhury S, Berrondo M, Weitzner BD, Muthu P, Bergman H, Gray JJ.

PLoS One. 2011;6(8):e22477. doi: 10.1371/journal.pone.0022477. Epub 2011 Aug 2.

12.

Minimally invasive technique of auricular cartilage harvest for tissue engineering.

Megerian CA, Weitzner BD, Dore B, Bonassar LJ.

Tissue Eng. 2000 Feb;6(1):69-74.

PMID:
10941202

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