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Items: 16

1.

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Muchero W, Sondreli KL, Chen JG, Urbanowicz BR, Zhang J, Singan V, Yang Y, Brueggeman RS, Franco-Coronado J, Abraham N, Yang JY, Moremen KW, Weisberg AJ, Chang JH, Lindquist E, Barry K, Ranjan P, Jawdy S, Schmutz J, Tuskan GA, LeBoldus JM.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11573-11578. doi: 10.1073/pnas.1804428115. Epub 2018 Oct 18.

2.

Evolution of the U.S. Biological Select Agent Rathayibacter toxicus.

Davis EW 2nd, Tabima JF, Weisberg AJ, Lopes LD, Wiseman MS, Wiseman MS, Pupko T, Belcher MS, Sechler AJ, Tancos MA, Schroeder BK, Murray TD, Luster DG, Schneider WL, Rogers EE, Andreote FD, Grünwald NJ, Putnam ML, Chang JH.

MBio. 2018 Aug 28;9(4). pii: e01280-18. doi: 10.1128/mBio.01280-18.

3.

Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population.

Lopes LD, Pereira E Silva MC, Weisberg AJ, Davis EW 2nd, Yan Q, Varize CS, Wu CF, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Jul 22. doi: 10.1111/1462-2920.14363. [Epub ahead of print]

PMID:
30033663
4.

Response to comments on "Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management".

Chang JH, Putnam ML, Grünwald NJ, Savory EA, Fuller SL, Weisberg AJ.

Elife. 2018 May 8;7. pii: e35852. doi: 10.7554/eLife.35852.

5.

The population genetic test Tajima's D identifies genes encoding pathogen-associated molecular patterns and other virulence-related genes in Ralstonia solanacearum.

Eckshtain-Levi N, Weisberg AJ, Vinatzer BA.

Mol Plant Pathol. 2018 Sep;19(9):2187-2192. doi: 10.1111/mpp.12688. Epub 2018 May 23.

PMID:
29660239
6.

Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management.

Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH.

Elife. 2018 Mar 13;7. pii: e36350. doi: 10.7554/eLife.36350. No abstract available.

7.

Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management.

Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH.

Elife. 2017 Dec 12;6. pii: e30925. doi: 10.7554/eLife.30925. Erratum in: Elife. 2018 Mar 13;7:.

8.

Sequencing and De Novo Assembly of the Toxicodendron radicans (Poison Ivy) Transcriptome.

Weisberg AJ, Kim G, Westwood JH, Jelesko JG.

Genes (Basel). 2017 Nov 10;8(11). pii: E317. doi: 10.3390/genes8110317.

9.

Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity.

Lopes LD, Davis EW 2nd, Pereira E Silva MC, Weisberg AJ, Bresciani L, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Jan;20(1):62-74. doi: 10.1111/1462-2920.13957. Epub 2017 Nov 10.

PMID:
29027341
10.

Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms.

Moore ER, Bullington BS, Weisberg AJ, Jiang Y, Chang J, Halsey KH.

PLoS One. 2017 Jul 7;12(7):e0181098. doi: 10.1371/journal.pone.0181098. eCollection 2017.

11.

Isothermal Amplification and Lateral-Flow Assay for Detecting Crown-Gall-Causing Agrobacterium spp.

Fuller SL, Savory EA, Weisberg AJ, Buser JZ, Gordon MI, Putnam ML, Chang JH.

Phytopathology. 2017 Sep;107(9):1062-1068. doi: 10.1094/PHYTO-04-17-0144-R. Epub 2017 Jul 28.

12.

Microbe-ID: an open source toolbox for microbial genotyping and species identification.

Tabima JF, Everhart SE, Larsen MM, Weisberg AJ, Kamvar ZN, Tancos MA, Smart CD, Chang JH, Grünwald NJ.

PeerJ. 2016 Aug 18;4:e2279. doi: 10.7717/peerj.2279. eCollection 2016.

14.

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria.

Davis Ii EW, Weisberg AJ, Tabima JF, Grunwald NJ, Chang JH.

PeerJ. 2016 Jul 19;4:e2222. doi: 10.7717/peerj.2222. eCollection 2016.

15.

Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains.

Weisberg AJ, Elmarakeby HA, Heath LS, Vinatzer BA.

Open Forum Infect Dis. 2015 Mar 12;2(1):ofv024. doi: 10.1093/ofid/ofv024. eCollection 2015 Jan. Erratum in: Open Forum Infect Dis. 2015 Jan;2(1):ofv041.

16.

Phylobiochemical characterization of class-Ib aspartate/prephenate aminotransferases reveals evolution of the plant arogenate phenylalanine pathway.

Dornfeld C, Weisberg AJ, K C R, Dudareva N, Jelesko JG, Maeda HA.

Plant Cell. 2014 Jul;26(7):3101-14. doi: 10.1105/tpc.114.127407. Epub 2014 Jul 28. Erratum in: Plant Cell. 2017 Jan;29(1):192-195.

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