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Items: 17

1.

Increasing workflow development speed and reproducibility with Vectools.

Weirick T, Müller R, Uchida S.

Version 2. F1000Res. 2018 Sep 20 [revised 2018 Jan 1];7:1499. doi: 10.12688/f1000research.16301.2. eCollection 2018.

2.

The Genome of a Thermo Tolerant, Pathogenic Albino Aspergillus fumigatus.

Couger B, Weirick T, Damásio ARL, Segato F, Polizeli MLTM, de Almeida RSC, Goldman GH, Prade RA.

Front Microbiol. 2018 Aug 14;9:1827. doi: 10.3389/fmicb.2018.01827. eCollection 2018.

3.

Long Non-coding RNAs in Endothelial Biology.

Weirick T, Militello G, Uchida S.

Front Physiol. 2018 May 14;9:522. doi: 10.3389/fphys.2018.00522. eCollection 2018. Review.

4.

A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.

Militello G, Hosen MR, Ponomareva Y, Gellert P, Weirick T, John D, Hindi SM, Mamchaoui K, Mouly V, Döring C, Zhang L, Nakamura M, Kumar A, Fukada SI, Dimmeler S, Uchida S.

J Mol Cell Biol. 2018 Apr 1;10(2):102-117. doi: 10.1093/jmcb/mjy025.

PMID:
29618024
5.

Airn Regulates Igf2bp2 Translation in Cardiomyocytes.

Hosen MR, Militello G, Weirick T, Ponomareva Y, Dassanayaka S, Moore JB 4th, Döring C, Wysoczynski M, Jones SP, Dimmeler S, Uchida S.

Circ Res. 2018 May 11;122(10):1347-1353. doi: 10.1161/CIRCRESAHA.117.312215. Epub 2018 Feb 26.

6.

Logic programming to infer complex RNA expression patterns from RNA-seq data.

Weirick T, Militello G, Ponomareva Y, John D, Döring C, Dimmeler S, Uchida S.

Brief Bioinform. 2018 Mar 1;19(2):199-209. doi: 10.1093/bib/bbw117.

PMID:
28011754
7.

RNAEditor: easy detection of RNA editing events and the introduction of editing islands.

John D, Weirick T, Dimmeler S, Uchida S.

Brief Bioinform. 2017 Nov 1;18(6):993-1001. doi: 10.1093/bib/bbw087.

PMID:
27694136
8.

ANGIOGENES: knowledge database for protein-coding and noncoding RNA genes in endothelial cells.

Müller R, Weirick T, John D, Militello G, Chen W, Dimmeler S, Uchida S.

Sci Rep. 2016 Sep 1;6:32475. doi: 10.1038/srep32475.

9.

Screening and validation of lncRNAs and circRNAs as miRNA sponges.

Militello G, Weirick T, John D, Döring C, Dimmeler S, Uchida S.

Brief Bioinform. 2017 Sep 1;18(5):780-788. doi: 10.1093/bib/bbw053.

PMID:
27373735
10.

Resolving the problem of multiple accessions of the same transcript deposited across various public databases.

Weirick T, John D, Uchida S.

Brief Bioinform. 2017 Mar 1;18(2):226-235. doi: 10.1093/bib/bbw017.

PMID:
26921280
11.

The identification and characterization of novel transcripts from RNA-seq data.

Weirick T, Militello G, Müller R, John D, Dimmeler S, Uchida S.

Brief Bioinform. 2016 Jul;17(4):678-85. doi: 10.1093/bib/bbv067. Epub 2015 Aug 17.

PMID:
26283677
12.

C-It-Loci: a knowledge database for tissue-enriched loci.

Weirick T, John D, Dimmeler S, Uchida S.

Bioinformatics. 2015 Nov 1;31(21):3537-43. doi: 10.1093/bioinformatics/btv410. Epub 2015 Jul 10.

PMID:
26163692
13.

Genome Sequences of the Lignin-Degrading Pseudomonas sp. Strain YS-1p and Rhizobium sp. Strain YS-1r Isolated from Decaying Wood.

Prabhakaran M, Couger MB, Jackson CA, Weirick T, Fathepure BZ.

Genome Announc. 2015 Mar 5;3(2). pii: e00019-15. doi: 10.1128/genomeA.00019-15.

14.

LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches.

Weirick T, Sahu SS, Mahalingam R, Kaundal R.

BMC Bioinformatics. 2014;15 Suppl 11:S15. doi: 10.1186/1471-2105-15-S11-S15. Epub 2014 Oct 21.

15.

Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches.

Sahu SS, Weirick T, Kaundal R.

BMC Bioinformatics. 2014;15 Suppl 11:S13. doi: 10.1186/1471-2105-15-S11-S13. Epub 2014 Oct 21.

16.

Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning.

Kaundal R, Sahu SS, Verma R, Weirick T.

BMC Bioinformatics. 2013;14 Suppl 14:S7. doi: 10.1186/1471-2105-14-S14-S7. Epub 2013 Oct 9.

17.

Partial, graded losses of dopamine terminals in the rat caudate-putamen: an animal model for the study of compensatory adaptation in preclinical parkinsonism.

Bergstrom BP, Schertz KE, Weirick T, Nafziger B, Takacs SA, Lopes KO, Massa KJ, Walker QD, Garris PA.

J Neurosci Methods. 2001 Mar 30;106(1):15-28.

PMID:
11248337

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