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Items: 1 to 50 of 165

1.

ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data.

Lee JY, Choi H, Colangelo CM, Davis D, Hoopmann MR, Käll L, Lam H, Payne SH, Perez-Riverol Y, The M, Wilson R, Weintraub ST, Palmblad M.

J Biomol Tech. 2018 Jun 21. pii: jbt.18-2902-003. doi: 10.7171/jbt.18-2902-003. [Epub ahead of print]

2.

Major venom proteins of the fire ant Solenopsis invicta: insights into possible pheromone-binding function from mass spectrometric analysis.

Das T, Alabi I, Colley M, Yan F, Griffith W, Bach S, Weintraub ST, Renthal R.

Insect Mol Biol. 2018 Apr 15. doi: 10.1111/imb.12388. [Epub ahead of print]

PMID:
29656567
3.

To Be or Not To Be T4: Evidence of a Complex Evolutionary Pathway of Head Structure and Assembly in Giant Salmonella Virus SPN3US.

Ali B, Desmond MI, Mallory SA, Benítez AD, Buckley LJ, Weintraub ST, Osier MV, Black LW, Thomas JA.

Front Microbiol. 2017 Nov 15;8:2251. doi: 10.3389/fmicb.2017.02251. eCollection 2017.

4.

Docosahexaenoic Acid Supplementation in Pregnancy Modulates Placental Cellular Signaling and Nutrient Transport Capacity in Obese Women.

Lager S, Ramirez VI, Acosta O, Meireles C, Miller E, Gaccioli F, Rosario FJ, Gelfond JAL, Hakala K, Weintraub ST, Krummel DA, Powell TL.

J Clin Endocrinol Metab. 2017 Dec 1;102(12):4557-4567. doi: 10.1210/jc.2017-01384.

PMID:
29053802
5.

A Comprehensive High-Resolution Targeted Workflow for the Deep Profiling of Sphingolipids.

Peng B, Weintraub ST, Coman C, Ponnaiyan S, Sharma R, Tews B, Winter D, Ahrends R.

Anal Chem. 2017 Nov 21;89(22):12480-12487. doi: 10.1021/acs.analchem.7b03576. Epub 2017 Nov 2.

PMID:
29039908
6.

The naked mole-rat exhibits an unusual cardiac myofilament protein profile providing new insights into heart function of this naturally subterranean rodent.

Grimes KM, Barefield DY, Kumar M, McNamara JW, Weintraub ST, de Tombe PP, Sadayappan S, Buffenstein R.

Pflugers Arch. 2017 Dec;469(12):1603-1613. doi: 10.1007/s00424-017-2046-3. Epub 2017 Aug 5.

PMID:
28780592
7.

Reactive sites and course of reduction in the Rieske protein.

Li SY, Oyala PH, Britt RD, Weintraub ST, Hunsicker-Wang LM.

J Biol Inorg Chem. 2017 Jun;22(4):545-557. doi: 10.1007/s00775-017-1445-4. Epub 2017 Feb 14.

PMID:
28197737
8.

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments.

Choi M, Eren-Dogu ZF, Colangelo C, Cottrell J, Hoopmann MR, Kapp EA, Kim S, Lam H, Neubert TA, Palmblad M, Phinney BS, Weintraub ST, MacLean B, Vitek O.

J Proteome Res. 2017 Feb 3;16(2):945-957. doi: 10.1021/acs.jproteome.6b00881. Epub 2017 Jan 3.

PMID:
27990823
9.

Down-Regulation of Placental Transport of Amino Acids Precedes the Development of Intrauterine Growth Restriction in Maternal Nutrient Restricted Baboons.

Pantham P, Rosario FJ, Weintraub ST, Nathanielsz PW, Powell TL, Li C, Jansson T.

Biol Reprod. 2016 Nov;95(5):98. Epub 2016 Sep 7.

10.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

Deutsch EW, Overall CM, Van Eyk JE, Baker MS, Paik YK, Weintraub ST, Lane L, Martens L, Vandenbrouck Y, Kusebauch U, Hancock WS, Hermjakob H, Aebersold R, Moritz RL, Omenn GS.

J Proteome Res. 2016 Nov 4;15(11):3961-3970. Epub 2016 Aug 24.

11.

Identification of Essential Genes in the Salmonella Phage SPN3US Reveals Novel Insights into Giant Phage Head Structure and Assembly.

Thomas JA, Benítez Quintana AD, Bosch MA, Coll De Peña A, Aguilera E, Coulibaly A, Wu W, Osier MV, Hudson AO, Weintraub ST, Black LW.

J Virol. 2016 Oct 28;90(22):10284-10298. Print 2016 Nov 15.

12.

FGF19 functions as autocrine growth factor for hepatoblastoma.

Elzi DJ, Song M, Blackman B, Weintraub ST, López-Terrada D, Chen Y, Tomlinson GE, Shiio Y.

Genes Cancer. 2016 Mar;7(3-4):125-35. doi: 10.18632/genesandcancer.101.

13.

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

Kochen MA, Chambers MC, Holman JD, Nesvizhskii AI, Weintraub ST, Belisle JT, Islam MN, Griss J, Tabb DL.

Anal Chem. 2016 Jun 7;88(11):5733-41. doi: 10.1021/acs.analchem.6b00021. Epub 2016 May 24.

14.

Protein S-Glutathionylation Mediates Macrophage Responses to Metabolic Cues from the Extracellular Environment.

Ullevig SL, Kim HS, Short JD, Tavakoli S, Weintraub ST, Downs K, Asmis R.

Antioxid Redox Signal. 2016 Nov 20;25(15):836-851. Epub 2016 May 17.

15.

Challenges in Large-Scale Computational Mass Spectrometry and Multiomics.

Kohlbacher O, Vitek O, Weintraub ST.

J Proteome Res. 2016 Mar 4;15(3):681-2. doi: 10.1021/acs.jproteome.6b00067. No abstract available.

PMID:
26939758
16.

Identification of structural and morphogenesis genes of Pseudoalteromonas phage φRIO-1 and placement within the evolutionary history of Podoviridae.

Hardies SC, Thomas JA, Black L, Weintraub ST, Hwang CY, Cho BC.

Virology. 2016 Feb;489:116-27. doi: 10.1016/j.virol.2015.12.005. Epub 2015 Dec 31.

17.

Matrix metalloproteinase-9-dependent mechanisms of reduced contractility and increased stiffness in the aging heart.

Padmanabhan Iyer R, Chiao YA, Flynn ER, Hakala K, Cates CA, Weintraub ST, de Castro Brás LE.

Proteomics Clin Appl. 2016 Jan;10(1):92-107. doi: 10.1002/prca.201500038. Epub 2015 Dec 17.

18.

c-Myc and AMPK Control Cellular Energy Levels by Cooperatively Regulating Mitochondrial Structure and Function.

Edmunds LR, Sharma L, Wang H, Kang A, d'Souza S, Lu J, McLaughlin M, Dolezal JM, Gao X, Weintraub ST, Ding Y, Zeng X, Yates N, Prochownik EV.

PLoS One. 2015 Jul 31;10(7):e0134049. doi: 10.1371/journal.pone.0134049. eCollection 2015.

19.

D2HGDH regulates alpha-ketoglutarate levels and dioxygenase function by modulating IDH2.

Lin AP, Abbas S, Kim SW, Ortega M, Bouamar H, Escobedo Y, Varadarajan P, Qin Y, Sudderth J, Schulz E, Deutsch A, Mohan S, Ulz P, Neumeister P, Rakheja D, Gao X, Hinck A, Weintraub ST, DeBerardinis RJ, Sill H, Dahia PL, Aguiar RC.

Nat Commun. 2015 Jul 16;6:7768. doi: 10.1038/ncomms8768.

20.

Managing expectations when publishing tools and methods for computational proteomics.

Martens L, Kohlbacher O, Weintraub ST.

J Proteome Res. 2015 May 1;14(5):2002-4. doi: 10.1021/pr501318d. Epub 2015 Apr 22.

21.

Nedd8 regulates inflammasome-dependent caspase-1 activation.

Segovia JA, Tsai SY, Chang TH, Shil NK, Weintraub ST, Short JD, Bose S.

Mol Cell Biol. 2015 Feb;35(3):582-97. doi: 10.1128/MCB.00775-14. Epub 2014 Dec 1.

22.

Vaccine-mediated immune responses to experimental pulmonary Cryptococcus gattii infection in mice.

Chaturvedi AK, Hameed RS, Wozniak KL, Hole CR, Leopold Wager CM, Weintraub ST, Lopez-Ribot JL, Wormley FL Jr.

PLoS One. 2014 Aug 13;9(8):e104316. doi: 10.1371/journal.pone.0104316. eCollection 2014.

23.

A cytosolic protein factor from the naked mole-rat activates proteasomes of other species and protects these from inhibition.

Rodriguez KA, Osmulski PA, Pierce A, Weintraub ST, Gaczynska M, Buffenstein R.

Biochim Biophys Acta. 2014 Nov;1842(11):2060-72. doi: 10.1016/j.bbadis.2014.07.005. Epub 2014 Jul 10.

24.

Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover.

Elzi DJ, Song M, Hakala K, Weintraub ST, Shiio Y.

J Proteome Res. 2014 Aug 1;13(8):3783-91. doi: 10.1021/pr500387m. Epub 2014 Jul 14.

25.

Age and SPARC change the extracellular matrix composition of the left ventricle.

de Castro Brás LE, Toba H, Baicu CF, Zile MR, Weintraub ST, Lindsey ML, Bradshaw AD.

Biomed Res Int. 2014;2014:810562. doi: 10.1155/2014/810562. Epub 2014 Mar 24.

26.

Negative elongation factor controls energy homeostasis in cardiomyocytes.

Pan H, Qin K, Guo Z, Ma Y, April C, Gao X, Andrews TG, Bokov A, Zhang J, Chen Y, Weintraub ST, Fan JB, Wang D, Hu Y, Aune GJ, Lindsey ML, Li R.

Cell Rep. 2014 Apr 10;7(1):79-85. doi: 10.1016/j.celrep.2014.02.028. Epub 2014 Mar 20.

27.

Adiponectin inhibits insulin function in primary trophoblasts by PPARα-mediated ceramide synthesis.

Aye IL, Gao X, Weintraub ST, Jansson T, Powell TL.

Mol Endocrinol. 2014 Apr;28(4):512-24. doi: 10.1210/me.2013-1401. Epub 2014 Feb 25.

28.

Are presentations at ASMS conferences publications?

Muddiman DC, Weintraub ST.

J Am Soc Mass Spectrom. 2014 Mar;25(3):301-2. doi: 10.1007/s13361-013-0791-x. No abstract available.

PMID:
24385401
29.

Citrate synthase is a novel in vivo matrix metalloproteinase-9 substrate that regulates mitochondrial function in the postmyocardial infarction left ventricle.

de Castro Brás LE, Cates CA, DeLeon-Pennell KY, Ma Y, Iyer RP, Halade GV, Yabluchanskiy A, Fields GB, Weintraub ST, Lindsey ML.

Antioxid Redox Signal. 2014 Nov 10;21(14):1974-85. doi: 10.1089/ars.2013.5411. Epub 2014 Feb 19.

30.

Identification and characterization of Cryptococcus neoformans protein fractions that induce protective immune responses.

Chaturvedi AK, Weintraub ST, Lopez-Ribot JL, Wormley FL Jr.

Proteomics. 2013 Dec;13(23-24):3429-41. doi: 10.1002/pmic.201300213.

31.

Proteomic analysis of the left ventricle post-myocardial infarction to identify in vivo candidate matrix metalloproteinase substrates.

Yabluchanskiy A, Li Y, de Castro Brás LE, Hakala K, Weintraub ST, Lindsey ML.

Methods Mol Biol. 2013;1066:185-99. doi: 10.1007/978-1-62703-604-7_16.

32.

Texas 3-step decellularization protocol: looking at the cardiac extracellular matrix.

de Castro Brás LE, Ramirez TA, DeLeon-Pennell KY, Chiao YA, Ma Y, Dai Q, Halade GV, Hakala K, Weintraub ST, Lindsey ML.

J Proteomics. 2013 Jun 28;86:43-52. doi: 10.1016/j.jprot.2013.05.004. Epub 2013 May 14.

33.

Interlaboratory studies and initiatives developing standards for proteomics.

Ivanov AR, Colangelo CM, Dufresne CP, Friedman DB, Lilley KS, Mechtler K, Phinney BS, Rose KL, Rudnick PA, Searle BC, Shaffer SA, Weintraub ST.

Proteomics. 2013 Mar;13(6):904-9. doi: 10.1002/pmic.201200532. Epub 2013 Feb 19.

34.

Profiling the anaerobic response of C. elegans using GC-MS.

Butler JA, Mishur RJ, Bokov AF, Hakala KW, Weintraub ST, Rea SL.

PLoS One. 2012;7(9):e46140. doi: 10.1371/journal.pone.0046140. Epub 2012 Sep 27.

35.

Wnt antagonist SFRP1 functions as a secreted mediator of senescence.

Elzi DJ, Song M, Hakala K, Weintraub ST, Shiio Y.

Mol Cell Biol. 2012 Nov;32(21):4388-99. doi: 10.1128/MCB.06023-11. Epub 2012 Aug 27.

36.

Plasma fractionation enriches post-myocardial infarction samples prior to proteomics analysis.

de Castro Brás LE, Deleon KY, Ma Y, Dai Q, Hakala K, Weintraub ST, Lindsey ML.

Int J Proteomics. 2012;2012:397103. doi: 10.1155/2012/397103. Epub 2012 Jun 18.

37.

Plasminogen activator inhibitor 1--insulin-like growth factor binding protein 3 cascade regulates stress-induced senescence.

Elzi DJ, Lai Y, Song M, Hakala K, Weintraub ST, Shiio Y.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12052-7. doi: 10.1073/pnas.1120437109. Epub 2012 Jul 9.

38.

Characterization of lytic Pseudomonas aeruginosa bacteriophages via biological properties and genomic sequences.

Karumidze N, Thomas JA, Kvatadze N, Goderdzishvili M, Hakala KW, Weintraub ST, Alavidze Z, Hardies SC.

Appl Microbiol Biotechnol. 2012 Jun;94(6):1609-17. doi: 10.1007/s00253-012-4119-8. Epub 2012 May 6.

PMID:
22562168
39.

Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ.

Thomas JA, Weintraub ST, Wu W, Winkler DC, Cheng N, Steven AC, Black LW.

Mol Microbiol. 2012 Apr;84(2):324-39. doi: 10.1111/j.1365-2958.2012.08025.x. Epub 2012 Mar 20.

40.

Developmental truncations of connexin 50 by caspases adaptively regulate gap junctions/hemichannels and protect lens cells against ultraviolet radiation.

Wang K, Gu S, Yin X, Weintraub ST, Hua Z, Jiang JX.

J Biol Chem. 2012 May 4;287(19):15786-97. doi: 10.1074/jbc.M111.313171. Epub 2012 Mar 14.

41.

Using extracellular matrix proteomics to understand left ventricular remodeling.

Lindsey ML, Weintraub ST, Lange RA.

Circ Cardiovasc Genet. 2012 Feb 1;5(1):o1-7. doi: 10.1161/CIRCGENETICS.110.957803. Review. No abstract available.

42.

The interaction of the von Hippel-Lindau tumor suppressor and heterochromatin protein 1.

Lai Y, Song M, Hakala K, Weintraub ST, Shiio Y.

Arch Biochem Biophys. 2012 Feb 15;518(2):103-10. doi: 10.1016/j.abb.2011.12.023. Epub 2012 Jan 3.

43.

Quantitative proteomic identification of the BRCA1 ubiquitination substrates.

Song M, Hakala K, Weintraub ST, Shiio Y.

J Proteome Res. 2011 Nov 4;10(11):5191-8. doi: 10.1021/pr200662b. Epub 2011 Oct 11.

44.

Proteomic dissection of the von Hippel-Lindau (VHL) interactome.

Lai Y, Song M, Hakala K, Weintraub ST, Shiio Y.

J Proteome Res. 2011 Nov 4;10(11):5175-82. doi: 10.1021/pr200642c. Epub 2011 Oct 11.

45.

ABRF-PRG07: advanced quantitative proteomics study.

Falick AM, Lane WS, Lilley KS, MacCoss MJ, Phinney BS, Sherman NE, Weintraub ST, Witkowska HE, Yates NA.

J Biomol Tech. 2011 Apr;22(1):21-6.

46.

Phosphorylation of connexin 50 by protein kinase A enhances gap junction and hemichannel function.

Liu J, Ek Vitorin JF, Weintraub ST, Gu S, Shi Q, Burt JM, Jiang JX.

J Biol Chem. 2011 May 13;286(19):16914-28. doi: 10.1074/jbc.M111.218735. Epub 2011 Mar 24.

47.

The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses.

Friedman DB, Andacht TM, Bunger MK, Chien AS, Hawke DH, Krijgsveld J, Lane WS, Lilley KS, MacCoss MJ, Moritz RL, Settlage RE, Sherman NE, Weintraub ST, Witkowska HE, Yates NA, Turck CW.

Proteomics. 2011 Apr;11(8):1371-81. doi: 10.1002/pmic.201000736. Epub 2011 Mar 11.

PMID:
21394914
48.

Quantitative proteomics identifies the Myb-binding protein p160 as a novel target of the von Hippel-Lindau tumor suppressor.

Lai Y, Qiao M, Song M, Weintraub ST, Shiio Y.

PLoS One. 2011 Feb 28;6(2):e16975. doi: 10.1371/journal.pone.0016975.

49.

Peroxynitrite-induced nitrative and oxidative modifications alter tau filament formation.

Vana L, Kanaan NM, Hakala K, Weintraub ST, Binder LI.

Biochemistry. 2011 Feb 22;50(7):1203-12. doi: 10.1021/bi101735m. Epub 2011 Jan 26.

50.

Alpha-1 antitrypsin is markedly decreased following pulmonary F. tularensis challenge.

Chambers JP, Yu JJ, Jupelli M, Weintraub ST, Lopez-Ribot JL, Valdes JJ, Arulanandam BP.

Front Cell Infect Microbiol. 2011 Dec 26;1:20. doi: 10.3389/fcimb.2011.00020. eCollection 2011.

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