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Items: 15


Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.

Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG, Klein AM.

Science. 2018 Jun 1;360(6392):981-987. doi: 10.1126/science.aar4362. Epub 2018 Apr 26.


The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.

Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM.

Science. 2018 Jun 1;360(6392). pii: eaar5780. doi: 10.1126/science.aar5780. Epub 2018 Apr 26.


A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice.

Dahlin JS, Hamey FK, Pijuan-Sala B, Shepherd M, Lau WWY, Nestorowa S, Weinreb C, Wolock S, Hannah R, Diamanti E, Kent DG, Gƶttgens B, Wilson NK.

Blood. 2018 May 24;131(21):e1-e11. doi: 10.1182/blood-2017-12-821413. Epub 2018 Mar 27.


Population snapshots predict early haematopoietic and erythroid hierarchies.

Tusi BK, Wolock SL, Weinreb C, Hwang Y, Hidalgo D, Zilionis R, Waisman A, Huh JR, Klein AM, Socolovsky M.

Nature. 2018 Mar 1;555(7694):54-60. doi: 10.1038/nature25741. Epub 2018 Feb 21.


Fundamental limits on dynamic inference from single-cell snapshots.

Weinreb C, Wolock S, Tusi BK, Socolovsky M, Klein AM.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2467-E2476. doi: 10.1073/pnas.1714723115. Epub 2018 Feb 20.


Clonal analysis of lineage fate in native haematopoiesis.

Rodriguez-Fraticelli AE, Wolock SL, Weinreb CS, Panero R, Patel SH, Jankovic M, Sun J, Calogero RA, Klein AM, Camargo FD.

Nature. 2018 Jan 11;553(7687):212-216. doi: 10.1038/nature25168. Epub 2018 Jan 3.


SPRING: a kinetic interface for visualizing high dimensional single-cell expression data.

Weinreb C, Wolock S, Klein AM.

Bioinformatics. 2018 Apr 1;34(7):1246-1248. doi: 10.1093/bioinformatics/btx792.


The Molecular Dialog between Flowering Plant Reproductive Partners Defined by SNP-Informed RNA-Sequencing.

Leydon AR, Weinreb C, Venable E, Reinders A, Ward JM, Johnson MA.

Plant Cell. 2017 May;29(5):984-1006. doi: 10.1105/tpc.16.00816. Epub 2017 Apr 11.


Acute HIV infection transmission among people who inject drugs in a mature epidemic setting.

Escudero DJ, Lurie MN, Mayer KH, Weinreb C, King M, Galea S, Friedman SR, Marshall BD.

AIDS. 2016 Oct 23;30(16):2537-2544.


3D RNA and Functional Interactions from Evolutionary Couplings.

Weinreb C, Riesselman AJ, Ingraham JB, Gross T, Sander C, Marks DS.

Cell. 2016 May 5;165(4):963-75. doi: 10.1016/j.cell.2016.03.030. Epub 2016 Apr 14.


Understanding the effects of different HIV transmission models in individual-based microsimulation of HIV epidemic dynamics in people who inject drugs.

Monteiro JF, Escudero DJ, Weinreb C, Flanigan T, Galea S, Friedman SR, Marshall BD.

Epidemiol Infect. 2016 Jun;144(8):1683-700. doi: 10.1017/S0950268815003180. Epub 2016 Jan 12.


Identification of hierarchical chromatin domains.

Weinreb C, Raphael BJ.

Bioinformatics. 2016 Jun 1;32(11):1601-9. doi: 10.1093/bioinformatics/btv485. Epub 2015 Aug 26.


Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes.

Weinreb C, Oesper L, Raphael BJ.

BMC Genomics. 2014;15 Suppl 6:S4. doi: 10.1186/1471-2164-15-S6-S4. Epub 2014 Oct 17.


Self-correcting maps of molecular pathways.

Rzhetsky A, Zheng T, Weinreb C.

PLoS One. 2006 Dec 20;1:e61.


Emergent behavior of growing knowledge about molecular interactions.

Cokol M, Iossifov I, Weinreb C, Rzhetsky A.

Nat Biotechnol. 2005 Oct;23(10):1243-7. No abstract available.


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