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The fitness benefits of genetic variation in circadian clock regulation.

Salmela MJ, Weinig C.

Curr Opin Plant Biol. 2019 Jul 11;49:86-93. doi: 10.1016/j.pbi.2019.06.003. [Epub ahead of print] Review.


A framework for genomics-informed ecophysiological modeling in plants.

Wang DR, Guadagno CR, Mao X, Mackay DS, Pleban JR, Baker RL, Weinig C, Jannink JL, Ewers BE.

J Exp Bot. 2019 Apr 29;70(9):2561-2574. doi: 10.1093/jxb/erz090.


QTL Underlying Circadian Clock Parameters Under Seasonally Variable Field Settings in Arabidopsis thaliana.

Rubin MJ, Brock MT, Davis SJ, Weinig C.

G3 (Bethesda). 2019 Apr 9;9(4):1131-1139. doi: 10.1534/g3.118.200770.


The effect of rhizosphere microbes outweighs host plant genetics in reducing insect herbivory.

Hubbard CJ, Li B, McMinn R, Brock MT, Maignien L, Ewers BE, Kliebenstein D, Weinig C.

Mol Ecol. 2019 Apr;28(7):1801-1811. doi: 10.1111/mec.14989. Epub 2019 Feb 6.


Phenotypic Trait Identification Using a Multimodel Bayesian Method: A Case Study Using Photosynthesis in Brassica rapa Genotypes.

Pleban JR, Mackay DS, Aston TL, Ewers BE, Weinig C.

Front Plant Sci. 2018 Apr 17;9:448. doi: 10.3389/fpls.2018.00448. eCollection 2018.


Circadian rhythms are associated with shoot architecture in natural settings.

Rubin MJ, Brock MT, Baker RL, Wilcox S, Anderson K, Davis SJ, Weinig C.

New Phytol. 2018 Jul;219(1):246-258. doi: 10.1111/nph.15162. Epub 2018 Apr 19.


Circadian rhythms are associated with variation in photosystem II function and photoprotective mechanisms.

Yarkhunova Y, Guadagno CR, Rubin MJ, Davis SJ, Ewers BE, Weinig C.

Plant Cell Environ. 2018 Nov;41(11):2518-2529. doi: 10.1111/pce.13216. Epub 2018 Jun 29.


Circadian Rhythms and Reproductive Phenology Covary in a Natural Plant Population.

Salmela MJ, McMinn RL, Guadagno CR, Ewers BE, Weinig C.

J Biol Rhythms. 2018 Jun;33(3):245-254. doi: 10.1177/0748730418764525. Epub 2018 Mar 28.


Circadian Rhythms and Redox State in Plants: Till Stress Do Us Part.

Guadagno CR, Ewers BE, Weinig C.

Front Plant Sci. 2018 Mar 5;9:247. doi: 10.3389/fpls.2018.00247. eCollection 2018.


Mapping and Predicting Non-Linear Brassica rapa Growth Phenotypes Based on Bayesian and Frequentist Complex Trait Estimation.

Baker RL, Leong WF, Welch S, Weinig C.

G3 (Bethesda). 2018 Mar 28;8(4):1247-1258. doi: 10.1534/g3.117.300350.


Bayesian estimation and use of high-throughput remote sensing indices for quantitative genetic analyses of leaf growth.

Baker RL, Leong WF, An N, Brock MT, Rubin MJ, Welch S, Weinig C.

Theor Appl Genet. 2018 Feb;131(2):283-298. doi: 10.1007/s00122-017-3001-6. Epub 2017 Oct 20.


The plant circadian clock influences rhizosphere community structure and function.

Hubbard CJ, Brock MT, van Diepen LT, Maignien L, Ewers BE, Weinig C.

ISME J. 2018 Feb;12(2):400-410. doi: 10.1038/ismej.2017.172. Epub 2017 Oct 20.


Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa.

Greenham K, Guadagno CR, Gehan MA, Mockler TC, Weinig C, Ewers BE, McClung CR.

Elife. 2017 Aug 18;6. pii: e29655. doi: 10.7554/eLife.29655.


Circadian rhythms vary over the growing season and correlate with fitness components.

Rubin MJ, Brock MT, Davis AM, German ZM, Knapp M, Welch SM, Harmer SL, Maloof JN, Davis SJ, Weinig C.

Mol Ecol. 2017 Oct;26(20):5528-5540. doi: 10.1111/mec.14287. Epub 2017 Sep 8.


Allocation to male vs female floral function varies by currency and responds differentially to density and moisture stress.

Brock MT, Winkelman RL, Rubin MJ, Edwards CE, Ewers BE, Weinig C.

Heredity (Edinb). 2017 Nov;119(5):349-359. doi: 10.1038/hdy.2017.41. Epub 2017 Aug 2.


Dead or Alive? Using Membrane Failure and Chlorophyll a Fluorescence to Predict Plant Mortality from Drought.

Guadagno CR, Ewers BE, Speckman HN, Aston TL, Huhn BJ, DeVore SB, Ladwig JT, Strawn RN, Weinig C.

Plant Physiol. 2017 Sep;175(1):223-234. doi: 10.1104/pp.16.00581. Epub 2017 Jul 14.


Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field.

Kerwin RE, Feusier J, Muok A, Lin C, Larson B, Copeland D, Corwin JA, Rubin MJ, Francisco M, Li B, Joseph B, Weinig C, Kliebenstein DJ.

New Phytol. 2017 Aug;215(3):1249-1263. doi: 10.1111/nph.14646. Epub 2017 Jun 13.


Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.

Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN.

G3 (Bethesda). 2017 Jul 5;7(7):2259-2270. doi: 10.1534/g3.117.043000.


Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica.

Baker RL, Yarkhunova Y, Vidal K, Ewers BE, Weinig C.

BMC Plant Biol. 2017 Jan 5;17(1):3. doi: 10.1186/s12870-016-0957-3.


Natural quantitative genetic variance in plant growth differs in response to ecologically relevant temperature heterogeneity.

Salmela MJ, Ewers BE, Weinig C.

Ecol Evol. 2016 Oct 1;6(21):7574-7585. doi: 10.1002/ece3.2482. eCollection 2016 Nov.


Genotypic variation in biomass allocation in response to field drought has a greater affect on yield than gas exchange or phenology.

Edwards CE, Ewers BE, Weinig C.

BMC Plant Biol. 2016 Aug 24;16(1):185. doi: 10.1186/s12870-016-0876-3.


Genetic architecture, biochemical underpinnings and ecological impact of floral UV patterning.

Brock MT, Lucas LK, Anderson NA, Rubin MJ, Markelz RJ, Covington MF, Devisetty UK, Chapple C, Maloof JN, Weinig C.

Mol Ecol. 2016 Mar;25(5):1122-40. doi: 10.1111/mec.13542. Epub 2016 Feb 23.


Selection during crop diversification involves correlated evolution of the circadian clock and ecophysiological traits in Brassica rapa.

Yarkhunova Y, Edwards CE, Ewers BE, Baker RL, Aston TL, McClung CR, Lou P, Weinig C.

New Phytol. 2016 Apr;210(1):133-44. doi: 10.1111/nph.13758. Epub 2015 Nov 30.


Variation in circadian rhythms is maintained among and within populations in Boechera stricta.

Salmela MJ, Greenham K, Lou P, McClung CR, Ewers BE, Weinig C.

Plant Cell Environ. 2016 Jun;39(6):1293-303. doi: 10.1111/pce.12670. Epub 2016 Feb 13.


Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape.

Baker RL, Leong WF, Brock MT, Markelz RJ, Covington MF, Devisetty UK, Edwards CE, Maloof J, Welch S, Weinig C.

New Phytol. 2015 Oct;208(1):257-68. doi: 10.1111/nph.13509. Epub 2015 Jun 17.


Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness.

Kerwin R, Feusier J, Corwin J, Rubin M, Lin C, Muok A, Larson B, Li B, Joseph B, Francisco M, Copeland D, Weinig C, Kliebenstein DJ.

Elife. 2015 Apr 13;4. doi: 10.7554/eLife.05604.


Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa.

Xie Q, Lou P, Hermand V, Aman R, Park HJ, Yun DJ, Kim WY, Salmela MJ, Ewers BE, Weinig C, Khan SL, Schaible DL, McClung CR.

Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3829-34. doi: 10.1073/pnas.1421803112. Epub 2015 Mar 9.


Natural diversity in daily rhythms of gene expression contributes to phenotypic variation.

de Montaigu A, Giakountis A, Rubin M, Tóth R, Cremer F, Sokolova V, Porri A, Reymond M, Weinig C, Coupland G.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):905-10. doi: 10.1073/pnas.1422242112. Epub 2014 Dec 29.


QTL architecture of reproductive fitness characters in Brassica rapa.

Dechaine JM, Brock MT, Weinig C.

BMC Plant Biol. 2014 Mar 18;14:66. doi: 10.1186/1471-2229-14-66.


Ecological genomics and process modeling of local adaptation to climate.

Weinig C, Ewers BE, Welch SM.

Curr Opin Plant Biol. 2014 Apr;18:66-72. doi: 10.1016/j.pbi.2014.02.007. Epub 2014 Mar 15. Review.


Quantitative trait loci × environment interactions for plant morphology vary over ontogeny in Brassica rapa.

Dechaine JM, Brock MT, Iniguez-Luy FL, Weinig C.

New Phytol. 2014 Jan;201(2):657-69. doi: 10.1111/nph.12520. Epub 2013 Oct 8.


Natural variation in GA1 associates with floral morphology in Arabidopsis thaliana.

Brock MT, Kover PX, Weinig C.

New Phytol. 2012 Jul;195(1):58-70. doi: 10.1111/j.1469-8137.2012.04145.x. Epub 2012 Apr 17.


Quantitative variation in water-use efficiency across water regimes and its relationship with circadian, vegetative, reproductive, and leaf gas-exchange traits.

Edwards CE, Ewers BE, McClung CR, Lou P, Weinig C.

Mol Plant. 2012 May;5(3):653-68. doi: 10.1093/mp/sss004. Epub 2012 Feb 8.


Genetic architecture of life history traits and environment-specific trade-offs.

Haselhorst MS, Edwards CE, Rubin MJ, Weinig C.

Mol Ecol. 2011 Oct;20(19):4042-58. doi: 10.1111/j.1365-294X.2011.05227.x. Epub 2011 Sep 9.


The genetic architecture of ecophysiological and circadian traits in Brassica rapa.

Edwards CE, Ewers BE, Williams DG, Xie Q, Lou P, Xu X, McClung CR, Weinig C.

Genetics. 2011 Sep;189(1):375-90. doi: 10.1534/genetics.110.125112. Epub 2011 Jul 12.


Genetic architecture of the circadian clock and flowering time in Brassica rapa.

Lou P, Xie Q, Xu X, Edwards CE, Brock MT, Weinig C, McClung CR.

Theor Appl Genet. 2011 Aug;123(3):397-409. doi: 10.1007/s00122-011-1592-x. Epub 2011 Apr 20.


Floral genetic architecture: an examination of QTL architecture underlying floral (co)variation across environments.

Brock MT, Dechaine JM, Iniguez-Luy FL, Maloof JN, Stinchcombe JR, Weinig C.

Genetics. 2010 Dec;186(4):1451-65. doi: 10.1534/genetics.110.119982. Epub 2010 Sep 13.


The quantitative-genetic and QTL architecture of trait integration and modularity in Brassica rapa across simulated seasonal settings.

Edwards CE, Weinig C.

Heredity (Edinb). 2011 Apr;106(4):661-77. doi: 10.1038/hdy.2010.103. Epub 2010 Aug 25.


Genetic variation in tolerance of competition and neighbour suppression in Arabidopsis thaliana.

Willis CG, Brock MT, Weinig C.

J Evol Biol. 2010 Jul;23(7):1412-24. doi: 10.1111/j.1420-9101.2010.02003.x. Epub 2010 May 18.


Genotypes of Brassica rapa respond differently to plant-induced variation in air CO2 concentration in growth chambers with standard and enhanced venting.

Edwards CE, Haselhorst MS, McKnite AM, Ewers BE, Williams DG, Weinig C.

Theor Appl Genet. 2009 Oct;119(6):991-1004. doi: 10.1007/s00122-009-1103-5. Epub 2009 Jul 15.


Indirect effects of FRIGIDA: floral trait (co)variances are altered by seasonally variable abiotic factors associated with flowering time.

Brock MT, Stinchcombe JR, Weinig C.

J Evol Biol. 2009 Sep;22(9):1826-38. doi: 10.1111/j.1420-9101.2009.01794.x. Epub 2009 Jul 3.


Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation.

Dechaine JM, Gardner G, Weinig C.

Plant Cell Environ. 2009 Oct;32(10):1297-309. doi: 10.1111/j.1365-3040.2009.01998.x. Epub 2009 May 15.


Polymorphic genes of major effect: consequences for variation, selection and evolution in Arabidopsis thaliana.

Stinchcombe JR, Weinig C, Heath KD, Brock MT, Schmitt J.

Genetics. 2009 Jul;182(3):911-22. doi: 10.1534/genetics.108.097030. Epub 2009 May 4.


Antagonistic multilevel selection on size and architecture in variable density settings.

Weinig C, Johnston JA, Willis CG, Maloof JN.

Evolution. 2007 Jan;61(1):58-67.


Shade avoidance and the regulation of leaf inclination in Arabidopsis.

Mullen JL, Weinig C, Hangarter RP.

Plant Cell Environ. 2006 Jun;29(6):1099-106.


Resolving the genetic basis of invasiveness and predicting invasions.

Weinig C, Brock MT, Dechaine JA, Welch SM.

Genetica. 2007 Feb;129(2):205-16. Epub 2006 Sep 6.


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