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Items: 36

1.

Analysis and Interpretation of Protein Post-Translational Modification Site Stoichiometry.

Prus G, Hoegl A, Weinert BT, Choudhary C.

Trends Biochem Sci. 2019 Nov;44(11):943-960. doi: 10.1016/j.tibs.2019.06.003. Epub 2019 Jul 8. Review.

PMID:
31296352
2.

Author Correction: Functions and mechanisms of non-histone protein acetylation.

Narita T, Weinert BT, Choudhary C.

Nat Rev Mol Cell Biol. 2019 Aug;20(8):508. doi: 10.1038/s41580-019-0156-9.

PMID:
31267066
3.

Retraction.

Kaidi A, Weinert BT, Choudhary C, Jackson SP.

Science. 2019 Apr 19;364(6437):247. doi: 10.1126/science.aax4558. Epub 2019 Apr 11. No abstract available.

4.

Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation.

Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT.

Nat Commun. 2019 Mar 5;10(1):1055. doi: 10.1038/s41467-019-09024-0.

5.

Acetylation of intrinsically disordered regions regulates phase separation.

Saito M, Hess D, Eglinger J, Fritsch AW, Kreysing M, Weinert BT, Choudhary C, Matthias P.

Nat Chem Biol. 2019 Jan;15(1):51-61. doi: 10.1038/s41589-018-0180-7. Epub 2018 Dec 10.

PMID:
30531905
6.

Functions and mechanisms of non-histone protein acetylation.

Narita T, Weinert BT, Choudhary C.

Nat Rev Mol Cell Biol. 2019 Mar;20(3):156-174. doi: 10.1038/s41580-018-0081-3. Review. Erratum in: Nat Rev Mol Cell Biol. 2019 Aug;20(8):508.

PMID:
30467427
7.

Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome.

Weinert BT, Narita T, Satpathy S, Srinivasan B, Hansen BK, Schölz C, Hamilton WB, Zucconi BE, Wang WW, Liu WR, Brickman JM, Kesicki EA, Lai A, Bromberg KD, Cole PA, Choudhary C.

Cell. 2018 Jun 28;174(1):231-244.e12. doi: 10.1016/j.cell.2018.04.033. Epub 2018 May 24.

8.

Author Correction: Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours.

Lasko LM, Jakob CG, Edalji RP, Qiu W, Montgomery D, Digiammarino EL, Hansen TM, Risi RM, Frey R, Manaves V, Shaw B, Algire M, Hessler P, Lam LT, Uziel T, Faivre E, Ferguson D, Buchanan FG, Martin RL, Torrent M, Chiang GG, Karukurichi K, Langston JW, Weinert BT, Choudhary C, de Vries P, Kluge AF, Patane MA, Van Drie JH, Wang C, McElligott D, Kesicki EA, Marmorstein R, Sun C, Cole PA, Rosenberg SH, Michaelides MR, Lai A, Bromberg KD.

Nature. 2018 Jun;558(7710):E1. doi: 10.1038/s41586-018-0111-5.

PMID:
29769713
9.

Benchmarking common quantification strategies for large-scale phosphoproteomics.

Hogrebe A, von Stechow L, Bekker-Jensen DB, Weinert BT, Kelstrup CD, Olsen JV.

Nat Commun. 2018 Mar 13;9(1):1045. doi: 10.1038/s41467-018-03309-6.

10.

Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours.

Lasko LM, Jakob CG, Edalji RP, Qiu W, Montgomery D, Digiammarino EL, Hansen TM, Risi RM, Frey R, Manaves V, Shaw B, Algire M, Hessler P, Lam LT, Uziel T, Faivre E, Ferguson D, Buchanan FG, Martin RL, Torrent M, Chiang GG, Karukurichi K, Langston JW, Weinert BT, Choudhary C, de Vries P, Van Drie JH, McElligott D, Kesicki E, Marmorstein R, Sun C, Cole PA, Rosenberg SH, Michaelides MR, Lai A, Bromberg KD.

Nature. 2017 Oct 5;550(7674):128-132. doi: 10.1038/nature24028. Epub 2017 Sep 27. Erratum in: Nature. 2018 May 16;:.

11.

Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome.

Weinert BT, Satpathy S, Hansen BK, Lyon D, Jensen LJ, Choudhary C.

Mol Cell Proteomics. 2017 May;16(5):759-769. doi: 10.1074/mcp.M117.067587. Epub 2017 Mar 2.

12.

A PTIP-PA1 subcomplex promotes transcription for IgH class switching independently from the associated MLL3/MLL4 methyltransferase complex.

Starnes LM, Su D, Pikkupeura LM, Weinert BT, Santos MA, Mund A, Soria R, Cho YW, Pozdnyakova I, Kubec Højfeldt M, Vala A, Yang W, López-Méndez B, Lee JE, Peng W, Yuan J, Ge K, Montoya G, Nussenzweig A, Choudhary C, Daniel JA.

Genes Dev. 2016 Jan 15;30(2):149-63. doi: 10.1101/gad.268797.115. Epub 2016 Jan 7.

13.

Avoiding abundance bias in the functional annotation of post-translationally modified proteins.

Schölz C, Lyon D, Refsgaard JC, Jensen LJ, Choudhary C, Weinert BT.

Nat Methods. 2015 Nov;12(11):1003-4. doi: 10.1038/nmeth.3621. No abstract available.

PMID:
26513550
14.

Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae.

Weinert BT, Iesmantavicius V, Moustafa T, Schölz C, Wagner SA, Magnes C, Zechner R, Choudhary C.

Mol Syst Biol. 2015 Oct 26;11(10):833. doi: 10.15252/msb.156513. No abstract available.

15.

Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions.

Weinert BT, Moustafa T, Iesmantavicius V, Zechner R, Choudhary C.

EMBO J. 2015 Nov 3;34(21):2620-32. doi: 10.15252/embj.201591271. Epub 2015 Sep 9.

16.

Acetylation site specificities of lysine deacetylase inhibitors in human cells.

Schölz C, Weinert BT, Wagner SA, Beli P, Miyake Y, Qi J, Jensen LJ, Streicher W, McCarthy AR, Westwood NJ, Lain S, Cox J, Matthias P, Mann M, Bradner JE, Choudhary C.

Nat Biotechnol. 2015 Apr;33(4):415-23. doi: 10.1038/nbt.3130. Epub 2015 Mar 9.

PMID:
25751058
17.

Ubiquitin-SUMO circuitry controls activated fanconi anemia ID complex dosage in response to DNA damage.

Gibbs-Seymour I, Oka Y, Rajendra E, Weinert BT, Passmore LA, Patel KJ, Olsen JV, Choudhary C, Bekker-Jensen S, Mailand N.

Mol Cell. 2015 Jan 8;57(1):150-64. doi: 10.1016/j.molcel.2014.12.001. Epub 2014 Dec 31.

18.

The growing landscape of lysine acetylation links metabolism and cell signalling.

Choudhary C, Weinert BT, Nishida Y, Verdin E, Mann M.

Nat Rev Mol Cell Biol. 2014 Aug;15(8):536-50. doi: 10.1038/nrm3841. Review.

PMID:
25053359
19.

Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells.

Iesmantavicius V, Weinert BT, Choudhary C.

Mol Cell Proteomics. 2014 Aug;13(8):1979-92. doi: 10.1074/mcp.O113.035683. Epub 2014 Jun 24.

20.

Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae.

Weinert BT, Iesmantavicius V, Moustafa T, Schölz C, Wagner SA, Magnes C, Zechner R, Choudhary C.

Mol Syst Biol. 2014 Jan 30;10:716. doi: 10.1002/msb.134766. Print 2014. Erratum in: Mol Syst Biol. 2015;11(10):833.

21.

Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation.

Weinert BT, Schölz C, Wagner SA, Iesmantavicius V, Su D, Daniel JA, Choudhary C.

Cell Rep. 2013 Aug 29;4(4):842-51. doi: 10.1016/j.celrep.2013.07.024. Epub 2013 Aug 15.

22.

Acetyl-phosphate is a critical determinant of lysine acetylation in E. coli.

Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.

Mol Cell. 2013 Jul 25;51(2):265-72. doi: 10.1016/j.molcel.2013.06.003. Epub 2013 Jul 3.

23.

Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.

Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.

PLoS One. 2012;7(12):e50545. doi: 10.1371/journal.pone.0050545. Epub 2012 Dec 7.

24.

Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.

Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.

Cell Rep. 2012 Aug 30;2(2):419-31. doi: 10.1016/j.celrep.2012.07.006. Epub 2012 Aug 16.

25.

Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.

Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.

Mol Cell Proteomics. 2012 Nov;11(11):1510-22. doi: 10.1074/mcp.M112.017251. Epub 2012 Aug 2.

26.

Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.

Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.

Mol Cell Proteomics. 2012 Dec;11(12):1578-85. doi: 10.1074/mcp.M112.017905. Epub 2012 Jul 11.

27.

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.

Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.

Mol Cell. 2012 Apr 27;46(2):212-25. doi: 10.1016/j.molcel.2012.01.026. Epub 2012 Mar 15.

28.

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.

Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1.

29.

Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation.

Weinert BT, Wagner SA, Horn H, Henriksen P, Liu WR, Olsen JV, Jensen LJ, Choudhary C.

Sci Signal. 2011 Jul 26;4(183):ra48. doi: 10.1126/scisignal.2001902.

30.

Human SIRT6 promotes DNA end resection through CtIP deacetylation.

Kaidi A, Weinert BT, Choudhary C, Jackson SP.

Science. 2010 Sep 10;329(5997):1348-53. doi: 10.1126/science.1192049. Retraction in: Science. 2019 Apr 19;364(6437):247.

31.

Real-time PCR analysis of genes encoding tumor antigens in esophageal tumors and a cancer vaccine.

Weinert BT, Krishnadath KK, Milano F, Pedersen AW, Claesson MH, Zocca MB.

Cancer Immun. 2009 Oct 9;9:9.

32.
33.

P element excision and repair by non-homologous end joining occurs in both G1 and G2 of the cell cycle.

Weinert BT, Min B, Rio DC.

DNA Repair (Amst). 2005 Feb 3;4(2):171-81.

PMID:
15590325
34.
35.

Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage.

Brodsky MH, Weinert BT, Tsang G, Rong YS, McGinnis NM, Golic KG, Rio DC, Rubin GM.

Mol Cell Biol. 2004 Feb;24(3):1219-31.

36.

Invited review: Theories of aging.

Weinert BT, Timiras PS.

J Appl Physiol (1985). 2003 Oct;95(4):1706-16. Review.

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