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Items: 35

1.

Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics.

Díaz-Mejía JJ, Celaj A, Mellor JC, Coté A, Balint A, Ho B, Bansal P, Shaeri F, Gebbia M, Weile J, Verby M, Karkhanina A, Zhang Y, Wong C, Rich J, Prendergast D, Gupta G, Öztürk S, Durocher D, Brown GW, Roth FP.

Mol Syst Biol. 2018 May 28;14(5):e7985. doi: 10.15252/msb.20177985.

2.

Trauma facilities in Denmark - a nationwide cross-sectional benchmark study of facilities and trauma care organisation.

Weile J, Nielsen K, Primdahl SC, Frederiksen CA, Laursen CB, Sloth E, Mølgaard O, Knudsen L, Kirkegaard H.

Scand J Trauma Resusc Emerg Med. 2018 Mar 27;26(1):22. doi: 10.1186/s13049-018-0486-1.

3.

Validation of the Peripheral Ultrasound-guided Vascular Access Rating Scale.

Primdahl SC, Weile J, Clemmesen L, Madsen KR, Subhi Y, Petersen P, Graumann O.

Medicine (Baltimore). 2018 Jan;97(2):e9576. doi: 10.1097/MD.0000000000009576.

4.

A framework for exhaustively mapping functional missense variants.

Weile J, Sun S, Cote AG, Knapp J, Verby M, Mellor JC, Wu Y, Pons C, Wong C, van Lieshout N, Yang F, Tasan M, Tan G, Yang S, Fowler DM, Nussbaum R, Bloom JD, Vidal M, Hill DE, Aloy P, Roth FP.

Mol Syst Biol. 2017 Dec 21;13(12):957. doi: 10.15252/msb.20177908.

5.

Assessing predictions of fitness effects of missense mutations in SUMO-conjugating enzyme UBE2I.

Zhang J, Kinch LN, Cong Q, Weile J, Sun S, Cote AG, Roth FP, Grishin NV.

Hum Mutat. 2017 Sep;38(9):1051-1063. doi: 10.1002/humu.23293.

PMID:
28817247
6.

Ultrasonography in trauma: a nation-wide cross-sectional investigation.

Weile J, Nielsen K, Primdahl SC, Frederiksen CA, Laursen CB, Sloth E, Kirkegaard H.

Crit Ultrasound J. 2017 Dec;9(1):16. doi: 10.1186/s13089-017-0071-2. Epub 2017 Jun 20.

7.

Rating scale for the assessment of competence in ultrasound-guided peripheral vascular access - a Delphi Consensus Study.

Primdahl SC, Todsen T, Clemmesen L, Knudsen L, Weile J.

J Vasc Access. 2016 Sep 21;17(5):440-445. doi: 10.5301/jva.5000581. Epub 2016 Aug 1.

PMID:
27516142
8.

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.

Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, Yi S, Tyagi T, Sheykhkarimli D, Roth JF, Wong C, Musa L, Snider J, Liu YC, Yu H, Braun P, Stagljar I, Hao T, Calderwood MA, Pelletier L, Aloy P, Hill DE, Vidal M, Roth FP.

Mol Syst Biol. 2016 Apr 22;12(4):863. doi: 10.15252/msb.20156660.

9.

Developing an emergency ultrasound app - a collaborative project between clinicians from different universities.

Foss KT, Subhi Y, Aagaard R, Bessmann EL, Bøtker MT, Graumann O, Laursen CB, Weile J, Todsen T.

Scand J Trauma Resusc Emerg Med. 2015 Jun 20;23:47. doi: 10.1186/s13049-015-0130-2.

10.

Impact of Ciprofloxacin and Clindamycin Administration on Gram-Negative Bacteria Isolated from Healthy Volunteers and Characterization of the Resistance Genes They Harbor.

Card RM, Mafura M, Hunt T, Kirchner M, Weile J, Rashid MU, Weintraub A, Nord CE, Anjum MF.

Antimicrob Agents Chemother. 2015 Aug;59(8):4410-6. doi: 10.1128/AAC.00068-15. Epub 2015 May 18.

11.

Widespread macromolecular interaction perturbations in human genetic disorders.

Sahni N, Yi S, Taipale M, Fuxman Bass JI, Coulombe-Huntington J, Yang F, Peng J, Weile J, Karras GI, Wang Y, Kovács IA, Kamburov A, Krykbaeva I, Lam MH, Tucker G, Khurana V, Sharma A, Liu YY, Yachie N, Zhong Q, Shen Y, Palagi A, San-Miguel A, Fan C, Balcha D, Dricot A, Jordan DM, Walsh JM, Shah AA, Yang X, Stoyanova AK, Leighton A, Calderwood MA, Jacob Y, Cusick ME, Salehi-Ashtiani K, Whitesell LJ, Sunyaev S, Berger B, Barabási AL, Charloteaux B, Hill DE, Hao T, Roth FP, Xia Y, Walhout AJM, Lindquist S, Vidal M.

Cell. 2015 Apr 23;161(3):647-660. doi: 10.1016/j.cell.2015.04.013.

12.

First successful combination of ECMO with cytokine removal therapy in cardiogenic septic shock: a case report.

Bruenger F, Kizner L, Weile J, Morshuis M, Gummert JF.

Int J Artif Organs. 2015 Feb;38(2):113-6. doi: 10.5301/ijao.5000382. Epub 2015 Feb 3.

PMID:
25656010
13.

Antimicrobial resistance characteristics and fitness of Gram-negative fecal bacteria from volunteers treated with minocycline or amoxicillin.

Kirchner M, Mafura M, Hunt T, Abu-Oun M, Nunez-Garcia J, Hu Y, Weile J, Coates A, Card R, Anjum MF.

Front Microbiol. 2014 Dec 17;5:722. doi: 10.3389/fmicb.2014.00722. eCollection 2014.

14.

[Adder bites].

Weile J, Due-Rasmussen D, Hørlyk UG.

Ugeskr Laeger. 2014 May 26;176(11). pii: V08130509. Review. Danish.

PMID:
25096840
15.

Single-stranded DNA catalyzes hybridization of PCR-products to microarray capture probes.

Dally S, Rupp S, Lemuth K, Hartmann SC, Hiller E, Bailer SM, Knabbe C, Weile J.

PLoS One. 2014 Jul 15;9(7):e102338. doi: 10.1371/journal.pone.0102338. eCollection 2014.

16.

A framework for implementation, education, research and clinical use of ultrasound in emergency departments by the Danish Society for Emergency Medicine.

Laursen CB, Nielsen K, Riishede M, Tiwald G, Møllekær A, Aagaard R, Posth S, Weile J.

Scand J Trauma Resusc Emerg Med. 2014 Apr 15;22:25. doi: 10.1186/1757-7241-22-25. Review.

17.

Cefotaxime resistant Escherichia coli collected from a healthy volunteer; characterisation and the effect of plasmid loss.

Kirchner M, Abuoun M, Mafura M, Bagnall M, Hunt T, Thomas C, Weile J, Anjum MF.

PLoS One. 2013 Dec 27;8(12):e84142. doi: 10.1371/journal.pone.0084142. eCollection 2013.

18.

DNA microarray for genotyping antibiotic resistance determinants in Acinetobacter baumannii clinical isolates.

Dally S, Lemuth K, Kaase M, Rupp S, Knabbe C, Weile J.

Antimicrob Agents Chemother. 2013 Oct;57(10):4761-8. doi: 10.1128/AAC.00863-13. Epub 2013 Jul 15.

19.

First case of Mycobacterium tuberculosis transmission by heart transplantation from donor to recipient.

Weile J, Eickmeyer H, Dreier J, Liebke M, Fuchs U, Wittke JW, Richter E, Gummert J, Knabbe C, Schulz U.

Int J Med Microbiol. 2013 Dec;303(8):449-51. doi: 10.1016/j.ijmm.2013.06.005. Epub 2013 Jun 15.

PMID:
23838045
20.

Treatment of tularemia in patient with chronic graft-versus-host disease.

Weile J, Seibold E, Knabbe C, Kaufmann M, Splettstoesser W.

Emerg Infect Dis. 2013 May;19(5):771-3. doi: 10.3201/eid1905.120377.

21.

Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformation.

Karagiannis GS, Weile J, Bader GD, Minta J.

BMC Cardiovasc Disord. 2013 Jan 16;13:4. doi: 10.1186/1471-2261-13-4.

22.

Bayesian integration of networks without gold standards.

Weile J, James K, Hallinan J, Cockell SJ, Lord P, Wipat A, Wilkinson DJ.

Bioinformatics. 2012 Jun 1;28(11):1495-500. doi: 10.1093/bioinformatics/bts154. Epub 2012 Apr 6.

23.

Customizable views on semantically integrated networks for systems biology.

Weile J, Pocock M, Cockell SJ, Lord P, Dewar JM, Holstein EM, Wilkinson D, Lydall D, Hallinan J, Wipat A.

Bioinformatics. 2011 May 1;27(9):1299-306. doi: 10.1093/bioinformatics/btr134. Epub 2011 Mar 16.

24.

An integrated dataset for in silico drug discovery.

Cockell SJ, Weile J, Lord P, Wipat C, Andriychenko D, Pocock M, Wilkinson D, Young M, Wipat A.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-116.

PMID:
20375448
25.

Integrated detection of extended-spectrum-beta-lactam resistance by DNA microarray-based genotyping of TEM, SHV, and CTX-M genes.

Leinberger DM, Grimm V, Rubtsova M, Weile J, Schröppel K, Wichelhaus TA, Knabbe C, Schmid RD, Bachmann TT.

J Clin Microbiol. 2010 Feb;48(2):460-71. doi: 10.1128/JCM.00765-09. Epub 2009 Dec 9.

26.

Authors' reply to: Re: A VIM-1 metallo-beta-lactamase-producing Klebsiella pneumoniae clinical isolate in an acute hospital in Germany.

Weile J, Knabbe C.

Int J Antimicrob Agents. 2010 Jan;35(1):100. doi: 10.1016/j.ijantimicag.2009.09.008. Epub 2009 Nov 4. No abstract available.

PMID:
19892527
27.

Severe cytomegalovirus-associated esophagitis in an immunocompetent patient after short-term steroid therapy.

Weile J, Streeck B, Muck J, Krebs G, Jakobus KH, Knabbe C, Weber F.

J Clin Microbiol. 2009 Sep;47(9):3031-3. doi: 10.1128/JCM.00143-09. Epub 2009 Jul 1.

28.

Current applications and future trends of molecular diagnostics in clinical bacteriology.

Weile J, Knabbe C.

Anal Bioanal Chem. 2009 Jun;394(3):731-42. doi: 10.1007/s00216-009-2779-8. Epub 2009 Apr 18. Review.

PMID:
19377839
29.

A VIM-1 metallo-beta-lactamase-producing Klebsiella pneumoniae clinical isolate in an acute hospital in Germany.

Weile J, Ohler S, Schönthal S, Knabbe C.

Int J Antimicrob Agents. 2009 Apr;33(4):389-91. doi: 10.1016/j.ijantimicag.2008.10.015. Epub 2008 Dec 23. No abstract available.

PMID:
19108993
30.

MoRAine--a web server for fast computational transcription factor binding motif re-annotation.

Baumbach J, Wittkop T, Weile J, Kohl T, Rahmann S.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-91.

PMID:
20134062
31.

CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.

Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A.

BMC Syst Biol. 2007 Nov 22;1:55.

32.

A case of Clostridium difficile-associated disease due to the highly virulent clone of Clostridium difficile PCR ribotype 027, March 2007 in Germany.

Zaiss NH, Weile J, Ackermann G, Kuijper E, Witte W, Nüebel U.

Euro Surveill. 2007 Nov 15;12(11):E071115.1. No abstract available.

33.

DNA microarray for genotyping multidrug-resistant Pseudomonas aeruginosa clinical isolates.

Weile J, Schmid RD, Bachmann TT, Susa M, Knabbe C.

Diagn Microbiol Infect Dis. 2007 Nov;59(3):325-38. Epub 2007 Sep 20.

PMID:
17888613
34.

Rapid and sensitive detection of fluoroquinolone-resistant Escherichia coli from urine samples using a genotyping DNA microarray.

Yu X, Susa M, Weile J, Knabbe C, Schmid RD, Bachmann TT.

Int J Med Microbiol. 2007 Oct;297(6):417-29. Epub 2007 May 7.

PMID:
17482874
35.

First detection of a VIM-1 metallo-beta-lactamase in a carbapenem-resistant Citrobacter freundii clinical isolate in an acute hospital in Germany.

Weile J, Rahmig H, Gfröer S, Schroeppel K, Knabbe C, Susa M.

Scand J Infect Dis. 2007;39(3):264-6.

PMID:
17366062

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