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Items: 1 to 50 of 104

1.

A Robust Auxin Response Network Controls Embryo and Suspensor Development through a bHLH Transcriptional Module.

Radoeva T, Lokerse AS, Llavata-Peris CI, Wendrich J, Xiang D, Liao CY, Vlaar L, Boekschoten M, Hooiveld G, Datla R, Weijers D.

Plant Cell. 2018 Dec 20. pii: tpc.00518.2018. doi: 10.1105/tpc.18.00518. [Epub ahead of print]

2.

Adapting INTACT to analyse cell-type-specific transcriptomes and nucleocytoplasmic mRNA dynamics in the Arabidopsis embryo.

Palovaara J, Weijers D.

Plant Reprod. 2018 Nov 15. doi: 10.1007/s00497-018-0347-0. [Epub ahead of print]

PMID:
30430248
3.

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis.

Chakrabortty B, Willemsen V, de Zeeuw T, Liao CY, Weijers D, Mulder B, Scheres B.

Curr Biol. 2018 Oct 8;28(19):3031-3043.e2. doi: 10.1016/j.cub.2018.07.025. Epub 2018 Sep 20.

4.

Cell-Type-Specific Promoter Identification Using Enhancer Trap Lines.

Radoeva T, Saiga S, Weijers D.

Methods Mol Biol. 2018;1830:127-139. doi: 10.1007/978-1-4939-8657-6_8.

PMID:
30043368
5.

Associations between Psychopathology in Mothers, Fathers and Their Children: A Structural Modeling Approach.

Weijers D, van Steensel FJA, Bögels SM.

J Child Fam Stud. 2018;27(6):1992-2003. doi: 10.1007/s10826-018-1024-5. Epub 2018 Mar 1.

6.

An experimental approach in revisiting the magnetic orientation of cattle.

Weijers D, Hemerik L, Heitkönig IMA.

PLoS One. 2018 Apr 11;13(4):e0187848. doi: 10.1371/journal.pone.0187848. eCollection 2018.

7.

Origin and evolution of the nuclear auxin response system.

Mutte SK, Kato H, Rothfels C, Melkonian M, Wong GK, Weijers D.

Elife. 2018 Mar 27;7. pii: e33399. doi: 10.7554/eLife.33399.

8.

A toolkit for studying cellular reorganization during early embryogenesis in Arabidopsis thaliana.

Liao CY, Weijers D.

Plant J. 2018 Mar;93(6):963-976. doi: 10.1111/tpj.13841. Epub 2018 Mar 5.

9.

Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root.

Lu KJ, De Rybel B, van Mourik H, Weijers D.

Development. 2018 Jan 22;145(2). pii: dev152892. doi: 10.1242/dev.152892.

10.

Publisher Correction: Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo.

Palovaara J, Saiga S, Wendrich JR, 't Wout Hofland NV, Schayck JPV, Hater F, Mutte S, Sjollema J, Boekschoten M, Hooiveld GJ, Weijers D.

Nat Plants. 2018 Feb;4(2):128. doi: 10.1038/s41477-017-0077-6.

PMID:
29326478
11.

Auxin: small molecule, big impact.

Weijers D, Nemhauser J, Yang Z.

J Exp Bot. 2018 Jan 4;69(2):133-136. doi: 10.1093/jxb/erx463. No abstract available.

12.

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo.

Palovaara J, Saiga S, Wendrich JR, van 't Wout Hofland N, van Schayck JP, Hater F, Mutte S, Sjollema J, Boekschoten M, Hooiveld GJ, Weijers D.

Nat Plants. 2017 Nov;3(11):894-904. doi: 10.1038/s41477-017-0035-3. Epub 2017 Nov 6. Erratum in: Nat Plants. 2018 Jan 11;:.

13.

Evolution of nuclear auxin signaling: lessons from genetic studies with basal land plants.

Kato H, Nishihama R, Weijers D, Kohchi T.

J Exp Bot. 2018 Jan 4;69(2):291-301. doi: 10.1093/jxb/erx267.

PMID:
28992186
14.

Auxin Response Factors: output control in auxin biology.

Roosjen M, Paque S, Weijers D.

J Exp Bot. 2018 Jan 4;69(2):179-188. doi: 10.1093/jxb/erx237.

PMID:
28992135
15.

Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana.

Cherenkov P, Novikova D, Omelyanchuk N, Levitsky V, Grosse I, Weijers D, Mironova V.

J Exp Bot. 2018 Jan 4;69(2):329-339. doi: 10.1093/jxb/erx254.

16.

Corrigendum: A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis.

Simonini S, Deb J, Moubayidin L, Stephenson P, Valluru M, Freire-Rios A, Sorefan K, Weijers D, Friml J, Østergaard L.

Genes Dev. 2017 Sep 1;31(17):1821. doi: 10.1101/gad.306985.117. No abstract available.

17.

Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem.

Wendrich JR, Möller BK, Li S, Saiga S, Sozzani R, Benfey PN, De Rybel B, Weijers D.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8922-E8929. doi: 10.1073/pnas.1707400114. Epub 2017 Oct 2.

18.

Plant embryogenesis.

de Vries SC, Weijers D.

Curr Biol. 2017 Sep 11;27(17):R870-R873. doi: 10.1016/j.cub.2017.05.026.

19.

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.

de Luis Balaguer MA, Fisher AP, Clark NM, Fernandez-Espinosa MG, Möller BK, Weijers D, Lohmann JU, Williams C, Lorenzo O, Sozzani R.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7632-E7640. doi: 10.1073/pnas.1707566114. Epub 2017 Aug 21.

20.

Multiple PPR protein interactions are involved in the RNA editing system in Arabidopsis mitochondria and plastids.

Andrés-Colás N, Zhu Q, Takenaka M, De Rybel B, Weijers D, Van Der Straeten D.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):8883-8888. doi: 10.1073/pnas.1705815114. Epub 2017 Jul 31.

21.

Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks.

Frommhagen M, Mutte SK, Westphal AH, Koetsier MJ, Hinz SWA, Visser J, Vincken JP, Weijers D, van Berkel WJH, Gruppen H, Kabel MA.

Biotechnol Biofuels. 2017 May 10;10:121. doi: 10.1186/s13068-017-0810-4. eCollection 2017.

22.

Correction: Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization.

Adibi M, Yoshida S, Weijers D, Fleck C.

PLoS One. 2017 Mar 23;12(3):e0174751. doi: 10.1371/journal.pone.0174751. eCollection 2017.

23.

Auxin response cell-autonomously controls ground tissue initiation in the early Arabidopsis embryo.

Möller BK, Ten Hove CA, Xiang D, Williams N, López LG, Yoshida S, Smit M, Datla R, Weijers D.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2533-E2539. doi: 10.1073/pnas.1616493114. Epub 2017 Mar 6.

24.

The developmental and environmental regulation of gravitropic setpoint angle in Arabidopsis and bean.

Roychoudhry S, Kieffer M, Del Bianco M, Liao CY, Weijers D, Kepinski S.

Sci Rep. 2017 Mar 3;7:42664. doi: 10.1038/srep42664.

25.

RIMA-Dependent Nuclear Accumulation of IYO Triggers Auxin-Irreversible Cell Differentiation in Arabidopsis.

Muñoz A, Mangano S, González-García MP, Contreras R, Sauer M, De Rybel B, Weijers D, Sánchez-Serrano JJ, Sanmartín M, Rojo E.

Plant Cell. 2017 Mar;29(3):575-588. doi: 10.1105/tpc.16.00791. Epub 2017 Feb 21.

26.

Phyllotaxis: A Matthew Effect in Auxin Action.

Weijers D.

Curr Biol. 2016 Dec 5;26(23):R1233-R1235. doi: 10.1016/j.cub.2016.10.019.

27.

A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis.

Simonini S, Deb J, Moubayidin L, Stephenson P, Valluru M, Freire-Rios A, Sorefan K, Weijers D, Friml J, Østergaard L.

Genes Dev. 2016 Oct 15;30(20):2286-2296. Erratum in: Genes Dev. 2017 Sep 1;31(17 ):1821.

28.

In Vivo Identification of Plant Protein Complexes Using IP-MS/MS.

Wendrich JR, Boeren S, Möller BK, Weijers D, De Rybel B.

Methods Mol Biol. 2017;1497:147-158.

PMID:
27864765
29.

FRET-FLIM for Visualizing and Quantifying Protein Interactions in Live Plant Cells.

Rios AF, Radoeva T, De Rybel B, Weijers D, Borst JW.

Methods Mol Biol. 2017;1497:135-146.

PMID:
27864764
30.

Theoretical approaches to understanding root vascular patterning: a consensus between recent models.

Mellor N, Adibi M, El-Showk S, De Rybel B, King J, Mähönen AP, Weijers D, Bishopp A.

J Exp Bot. 2017 Jan;68(1):5-16. doi: 10.1093/jxb/erw410. Epub 2016 Nov 11.

PMID:
27837006
31.

Tissue and Organ Initiation in the Plant Embryo: A First Time for Everything.

Palovaara J, de Zeeuw T, Weijers D.

Annu Rev Cell Dev Biol. 2016 Oct 6;32:47-75. Epub 2016 Aug 19. Review.

PMID:
27576120
32.

Quiescent center initiation in the Arabidopsis lateral root primordia is dependent on the SCARECROW transcription factor.

Goh T, Toyokura K, Wells DM, Swarup K, Yamamoto M, Mimura T, Weijers D, Fukaki H, Laplaze L, Bennett MJ, Guyomarc'h S.

Development. 2016 Sep 15;143(18):3363-71. doi: 10.1242/dev.135319. Epub 2016 Aug 10.

33.

Q&A: Auxin: the plant molecule that influences almost anything.

Paque S, Weijers D.

BMC Biol. 2016 Aug 10;14(1):67. doi: 10.1186/s12915-016-0291-0.

34.

Molecular Characterization of Arabidopsis GAL4/UAS Enhancer Trap Lines Identifies Novel Cell-Type-Specific Promoters.

Radoeva T, Ten Hove CA, Saiga S, Weijers D.

Plant Physiol. 2016 Jun;171(2):1169-81. doi: 10.1104/pp.16.00213. Epub 2016 Apr 20.

35.

A Female Identity Switch Helps Keep Only One Egg in the Basket.

Weijers D.

Dev Cell. 2016 Apr 4;37(1):5-6. doi: 10.1016/j.devcel.2016.03.011.

36.

The anaphase-promoting complex initiates zygote division in Arabidopsis through degradation of cyclin B1.

Guo L, Jiang L, Zhang Y, Lu XL, Xie Q, Weijers D, Liu CM.

Plant J. 2016 Apr;86(2):161-74. doi: 10.1111/tpj.13158.

37.

Plant Organogenesis: Rules of Order.

de Zeeuw T, Weijers D.

Curr Biol. 2016 Feb 22;26(4):R157-9. doi: 10.1016/j.cub.2015.12.058.

38.

Transcriptional Responses to the Auxin Hormone.

Weijers D, Wagner D.

Annu Rev Plant Biol. 2016 Apr 29;67:539-74. doi: 10.1146/annurev-arplant-043015-112122. Epub 2016 Feb 22. Review.

PMID:
26905654
39.

Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization.

Adibi M, Yoshida S, Weijers D, Fleck C.

PLoS One. 2016 Feb 12;11(2):e0147830. doi: 10.1371/journal.pone.0147830. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154638. PLoS One. 2017 Mar 23;12 (3):e0174751.

40.

Editorial overview: Growth and development: Signals and communication in plant pluripotency, differentiation and growth.

Wagner D, Weijers D.

Curr Opin Plant Biol. 2016 Feb;29:v-ix. doi: 10.1016/j.pbi.2016.01.001. Epub 2016 Jan 22. No abstract available.

PMID:
26809788
41.
42.

A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.

Vera-Sirera F, De Rybel B, Úrbez C, Kouklas E, Pesquera M, Álvarez-Mahecha JC, Minguet EG, Tuominen H, Carbonell J, Borst JW, Weijers D, Blázquez MA.

Dev Cell. 2015 Nov 23;35(4):432-43. doi: 10.1016/j.devcel.2015.10.022.

43.

Plant vascular development: from early specification to differentiation.

De Rybel B, Mähönen AP, Helariutta Y, Weijers D.

Nat Rev Mol Cell Biol. 2016 Jan;17(1):30-40. doi: 10.1038/nrm.2015.6. Epub 2015 Nov 18. Review.

PMID:
26580717
44.

Cytokinin response factors regulate PIN-FORMED auxin transporters.

Šimášková M, O'Brien JA, Khan M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen JM, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik K, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E.

Nat Commun. 2015 Nov 6;6:8717. doi: 10.1038/ncomms9717.

PMID:
26541513
45.

The role of auxin signaling in early embryo pattern formation.

Smit ME, Weijers D.

Curr Opin Plant Biol. 2015 Dec;28:99-105. doi: 10.1016/j.pbi.2015.10.001. Epub 2015 Oct 24. Review.

PMID:
26495766
46.

A set of domain-specific markers in the Arabidopsis embryo.

Wendrich JR, Möller BK, Uddin B, Radoeva T, Lokerse AS, De Rybel B, Weijers D.

Plant Reprod. 2015 Dec;28(3-4):153-60. doi: 10.1007/s00497-015-0266-2. Epub 2015 Jul 28.

47.

Organizer-Derived WOX5 Signal Maintains Root Columella Stem Cells through Chromatin-Mediated Repression of CDF4 Expression.

Pi L, Aichinger E, van der Graaff E, Llavata-Peris CI, Weijers D, Hennig L, Groot E, Laux T.

Dev Cell. 2015 Jun 8;33(5):576-88. doi: 10.1016/j.devcel.2015.04.024. Epub 2015 May 28.

48.

Ligation-independent cloning for plant research.

Wendrich JR, Liao CY, van den Berg WA, De Rybel B, Weijers D.

Methods Mol Biol. 2015;1284:421-31. doi: 10.1007/978-1-4939-2444-8_21.

PMID:
25757785
49.

Reporters for sensitive and quantitative measurement of auxin response.

Liao CY, Smet W, Brunoud G, Yoshida S, Vernoux T, Weijers D.

Nat Methods. 2015 Mar;12(3):207-10, 2 p following 210. doi: 10.1038/nmeth.3279. Epub 2015 Feb 2.

50.

Plant embryogenesis requires AUX/LAX-mediated auxin influx.

Robert HS, Grunewald W, Sauer M, Cannoot B, Soriano M, Swarup R, Weijers D, Bennett M, Boutilier K, Friml J.

Development. 2015 Feb 15;142(4):702-11. doi: 10.1242/dev.115832. Epub 2015 Jan 23.

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