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Items: 1 to 50 of 91

1.

Rock-crushing derived hydrogen directly supports a methanogenic community: significance for the deep biosphere.

Parkes RJ, Berlendis S, Roussel EG, Bahruji H, Webster G, Oldroyd A, Weightman AJ, Bowker M, Davies PR, Sass H.

Environ Microbiol Rep. 2019 Apr;11(2):165-172. doi: 10.1111/1758-2229.12723. Epub 2018 Dec 26.

PMID:
30507067
2.

Highly competitive fungi manipulate bacterial communities in decomposing beech wood (Fagus sylvatica).

Johnston SR, Hiscox J, Savoury M, Boddy L, Weightman AJ.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy225.

3.

Bacteria in decomposing wood and their interactions with wood-decay fungi.

Johnston SR, Boddy L, Weightman AJ.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw179. doi: 10.1093/femsec/fiw179. Epub 2016 Aug 23. Review.

PMID:
27559028
4.

Complex coupled metabolic and prokaryotic community responses to increasing temperatures in anaerobic marine sediments: critical temperatures and substrate changes.

Roussel EG, Cragg BA, Webster G, Sass H, Tang X, Williams AS, Gorra R, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2015 Aug;91(8):fiv084. doi: 10.1093/femsec/fiv084. Epub 2015 Jul 22.

5.

Chronic effects of temperature and nitrate pollution on Daphnia magna: Is this cladoceran suitable for widespread use as a tertiary treatment?

Maceda-Veiga A, Webster G, Canals O, Salvadó H, Weightman AJ, Cable J.

Water Res. 2015 Oct 15;83:141-52. doi: 10.1016/j.watres.2015.06.036. Epub 2015 Jun 24.

PMID:
26143271
6.

Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

Nobu MK, Dodsworth JA, Murugapiran SK, Rinke C, Gies EA, Webster G, Schwientek P, Kille P, Parkes RJ, Sass H, Jørgensen BB, Weightman AJ, Liu WT, Hallam SJ, Tsiamis G, Woyke T, Hedlund BP.

ISME J. 2016 Feb;10(2):273-86. doi: 10.1038/ismej.2015.97. Epub 2015 Jun 19.

7.

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.

Webster G, O'Sullivan LA, Meng Y, Williams AS, Sass AM, Watkins AJ, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2015 Feb;91(2):1-18. doi: 10.1093/femsec/fiu025. Epub 2014 Dec 15.

8.

The effect of anthropogenic arsenic contamination on the earthworm microbiome.

Pass DA, Morgan AJ, Read DS, Field D, Weightman AJ, Kille P.

Environ Microbiol. 2015 Jun;17(6):1884-96. doi: 10.1111/1462-2920.12712. Epub 2014 Dec 17.

PMID:
25404571
9.

Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure.

O'Sullivan LA, Roussel EG, Weightman AJ, Webster G, Hubert CR, Bell E, Head I, Sass H, Parkes RJ.

ISME J. 2015 Mar 17;9(4):922-33. doi: 10.1038/ismej.2014.190.

10.

Arabidopsis thaliana and Pisum sativum models demonstrate that root colonization is an intrinsic trait of Burkholderia cepacia complex bacteria.

Vidal-Quist JC, O'Sullivan LA, Desert A, Fivian-Hughes AS, Millet C, Jones TH, Weightman AJ, Rogers HJ, Berry C, Mahenthiralingam E.

Microbiology. 2014 Feb;160(Pt 2):373-84. doi: 10.1099/mic.0.074351-0. Epub 2013 Dec 10.

PMID:
24327425
11.

Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient.

O'Sullivan LA, Sass AM, Webster G, Fry JC, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2013 Jul;85(1):143-57. doi: 10.1111/1574-6941.12106. Epub 2013 Apr 5.

12.

Dynamic microbial community associated with iron-arsenic co-precipitation products from a groundwater storage system in Bangladesh.

Gorra R, Webster G, Martin M, Celi L, Mapelli F, Weightman AJ.

Microb Ecol. 2012 Jul;64(1):171-86. doi: 10.1007/s00248-012-0014-1. Epub 2012 Feb 16.

PMID:
22349905
13.

Culture-independent analysis of bacterial fuel contamination provides insight into the level of concordance with the standard industry practice of aerobic cultivation.

White J, Gilbert J, Hill G, Hill E, Huse SM, Weightman AJ, Mahenthiralingam E.

Appl Environ Microbiol. 2011 Jul;77(13):4527-38. doi: 10.1128/AEM.02317-10. Epub 2011 May 20.

14.

Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions.

Webster G, Sass H, Cragg BA, Gorra R, Knab NJ, Green CJ, Mathes F, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2011 Aug;77(2):248-63. doi: 10.1111/j.1574-6941.2011.01109.x. Epub 2011 May 9.

15.

Microbial diversity in Frenulata (Siboglinidae, Polychaeta) species from mud volcanoes in the Gulf of Cadiz (NE Atlantic).

Rodrigues CF, Hilário A, Cunha MR, Weightman AJ, Webster G.

Antonie Van Leeuwenhoek. 2011 Jun;100(1):83-98. doi: 10.1007/s10482-011-9567-0. Epub 2011 Feb 26.

PMID:
21359663
16.

Chemosynthetic bacteria found in bivalve species from mud volcanoes of the Gulf of Cadiz.

Rodrigues CF, Webster G, Cunha MR, Duperron S, Weightman AJ.

FEMS Microbiol Ecol. 2010 Sep;73(3):486-99. doi: 10.1111/j.1574-6941.2010.00913.x. Epub 2010 May 25.

17.

Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing.

Webster G, Rinna J, Roussel EG, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2010 May;72(2):179-97. doi: 10.1111/j.1574-6941.2010.00848.x. Epub 2010 Feb 15.

18.

Diversity of gut microbiota increases with aging and starvation in the desert locust.

Dillon RJ, Webster G, Weightman AJ, Keith Charnley A.

Antonie Van Leeuwenhoek. 2010 Jan;97(1):69-77. doi: 10.1007/s10482-009-9389-5. Epub 2009 Oct 30.

PMID:
19876756
19.

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG).

Parkes RJ, Sellek G, Webster G, Martin D, Anders E, Weightman AJ, Sass H.

Environ Microbiol. 2009 Dec;11(12):3140-53. doi: 10.1111/j.1462-2920.2009.02018.x. Epub 2009 Aug 19.

20.

Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).

Webster G, Blazejak A, Cragg BA, Schippers A, Sass H, Rinna J, Tang X, Mathes F, Ferdelman TG, Fry JC, Weightman AJ, Parkes RJ.

Environ Microbiol. 2009 Jan;11(1):239-57. doi: 10.1111/j.1462-2920.2008.01759.x. Epub 2008 Sep 23.

21.

Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments.

O'Sullivan LA, Webster G, Fry JC, Parkes RJ, Weightman AJ.

J Microbiol Methods. 2008 Dec;75(3):579-81. doi: 10.1016/j.mimet.2008.08.006. Epub 2008 Aug 26.

PMID:
18789360
22.

Prokaryotic biodiversity and activity in the deep subseafloor biosphere.

Fry JC, Parkes RJ, Cragg BA, Weightman AJ, Webster G.

FEMS Microbiol Ecol. 2008 Nov;66(2):181-96. doi: 10.1111/j.1574-6941.2008.00566.x. Epub 2008 Aug 20. Review.

23.

Purification, crystallization and preliminary crystallographic analysis of DehI, a group I alpha-haloacid dehalogenase from Pseudomonas putida strain PP3.

Schmidberger JW, Wilce JA, Weightman AJ, Wilce MC.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jul 1;64(Pt 7):596-8. doi: 10.1107/S1744309108008865. Epub 2008 Jun 7.

24.

The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism.

Schmidberger JW, Wilce JA, Weightman AJ, Whisstock JC, Wilce MC.

J Mol Biol. 2008 Apr 18;378(1):284-94. doi: 10.1016/j.jmb.2008.02.035. Epub 2008 Feb 29.

PMID:
18353360
25.

Composition of Acridid gut bacterial communities as revealed by 16S rRNA gene analysis.

Dillon RJ, Webster G, Weightman AJ, Dillon VM, Blanford S, Charnley AK.

J Invertebr Pathol. 2008 Mar;97(3):265-72. Epub 2007 Sep 21.

PMID:
17967463
26.

Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE.

Webster G, Yarram L, Freese E, Köster J, Sass H, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2007 Oct;62(1):78-89. Epub 2007 Aug 10.

27.

Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark).

Parkes RJ, Cragg BA, Banning N, Brock F, Webster G, Fry JC, Hornibrook E, Pancost RD, Kelly S, Knab N, Jørgensen BB, Rinna J, Weightman AJ.

Environ Microbiol. 2007 May;9(5):1146-61.

PMID:
17472631
28.

Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis.

O'Sullivan LA, Weightman AJ, Jones TH, Marchbank AM, Tiedje JM, Mahenthiralingam E.

Environ Microbiol. 2007 Apr;9(4):1017-34.

PMID:
17359273
30.

Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.

Webster G, Parkes RJ, Cragg BA, Newberry CJ, Weightman AJ, Fry JC.

FEMS Microbiol Ecol. 2006 Oct;58(1):65-85.

31.

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.

Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ.

Appl Environ Microbiol. 2006 Sep;72(9):5734-41.

32.

A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries.

Webster G, Watt LC, Rinna J, Fry JC, Evershed RP, Parkes RJ, Weightman AJ.

Environ Microbiol. 2006 Sep;8(9):1575-89.

PMID:
16913918
33.

Bacterial community structure, compartmentalization and activity in a microbial fuel cell.

Kim GT, Webster G, Wimpenny JW, Kim BH, Kim HJ, Weightman AJ.

J Appl Microbiol. 2006 Sep;101(3):698-710.

34.

Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species.

Payne GW, Ramette A, Rose HL, Weightman AJ, Jones TH, Tiedje JM, Mahenthiralingam E.

FEMS Microbiol Lett. 2006 Jun;259(1):126-32.

36.

Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets.

de Lillo A, Ashley FP, Palmer RM, Munson MA, Kyriacou L, Weightman AJ, Wade WG.

Oral Microbiol Immunol. 2006 Feb;21(1):61-8.

PMID:
16390343
37.

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ.

Appl Environ Microbiol. 2005 Dec;71(12):7724-36.

38.

Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'.

O'Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC.

Int J Syst Evol Microbiol. 2005 Sep;55(Pt 5):2189-94.

PMID:
16166730
39.

Dissimilatory Fe(III) reduction by an electrochemically active lactic acid bacterium phylogenetically related to Enterococcus gallinarum isolated from submerged soil.

Kim GT, Hyun MS, Chang IS, Kim HJ, Park HS, Kim BH, Kim SD, Wimpenny JW, Weightman AJ.

J Appl Microbiol. 2005;99(4):978-87.

40.

Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jørgensen BB, Aiello IW, Fry JC.

Nature. 2005 Jul 21;436(7049):390-4.

41.

Biofilm microbial community of a thermophilic trickling biofilter used for continuous biohydrogen production.

Ahn Y, Park EJ, Oh YK, Park S, Webster G, Weightman AJ.

FEMS Microbiol Lett. 2005 Aug 1;249(1):31-8.

42.

Development of a recA gene-based identification approach for the entire Burkholderia genus.

Payne GW, Vandamme P, Morgan SH, Lipuma JJ, Coenye T, Weightman AJ, Jones TH, Mahenthiralingam E.

Appl Environ Microbiol. 2005 Jul;71(7):3917-27.

43.

Investigation of the methanogen population structure and activity in a brackish lake sediment.

Banning N, Brock F, Fry JC, Parkes RJ, Hornibrook ER, Weightman AJ.

Environ Microbiol. 2005 Jul;7(7):947-60.

PMID:
15946291
44.

Culture-independent identification of periodontitis-associated Porphyromonas and Tannerella populations by targeted molecular analysis.

de Lillo A, Booth V, Kyriacou L, Weightman AJ, Wade WG.

J Clin Microbiol. 2004 Dec;42(12):5523-7.

45.
46.

Molecular monitoring of culturable bacteria from deep-sea sediment of the Nankai Trough, Leg 190 Ocean Drilling Program.

Toffin L, Webster G, Weightman AJ, Fry JC, Prieur D.

FEMS Microbiol Ecol. 2004 Jun 1;48(3):357-67. doi: 10.1016/j.femsec.2004.02.009.

47.

Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments.

O'Sullivan LA, Fuller KE, Thomas EM, Turley CM, Fry JC, Weightman AJ.

FEMS Microbiol Ecol. 2004 Mar 1;47(3):359-70. doi: 10.1016/S0168-6496(03)00300-3.

48.

Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190.

Newberry CJ, Webster G, Cragg BA, Parkes RJ, Weightman AJ, Fry JC.

Environ Microbiol. 2004 Mar;6(3):274-87.

PMID:
14871211
49.

Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale.

Webster G, Newberry CJ, Fry JC, Weightman AJ.

J Microbiol Methods. 2003 Oct;55(1):155-64.

PMID:
14500007
50.

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