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Items: 45

1.

Tissue Culture of Oil Palm: Finding the Balance Between Mass Propagation and Somaclonal Variation.

Weckx S, Inzé D, Maene L.

Front Plant Sci. 2019 Jun 4;10:722. doi: 10.3389/fpls.2019.00722. eCollection 2019. Review.

3.

Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species.

Verce M, De Vuyst L, Weckx S.

Front Microbiol. 2019 Mar 13;10:479. doi: 10.3389/fmicb.2019.00479. eCollection 2019.

4.

Following Coffee Production from Cherries to Cup: Microbiological and Metabolomic Analysis of Wet Processing of Coffea arabica.

Zhang SJ, De Bruyn F, Pothakos V, Torres J, Falconi C, Moccand C, Weckx S, De Vuyst L.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02635-18. doi: 10.1128/AEM.02635-18. Print 2019 Mar 15.

PMID:
30709820
5.

The addition of citrate stimulates the production of acetoin and diacetyl by a citrate-positive Lactobacillus crustorum strain during wheat sourdough fermentation.

Comasio A, Harth H, Weckx S, De Vuyst L.

Int J Food Microbiol. 2019 Jan 16;289:88-105. doi: 10.1016/j.ijfoodmicro.2018.08.030. Epub 2018 Sep 4.

PMID:
30218873
6.

Omics approaches to understand sourdough fermentation processes.

Weckx S, Van Kerrebroeck S, De Vuyst L.

Int J Food Microbiol. 2019 Aug 2;302:90-102. doi: 10.1016/j.ijfoodmicro.2018.05.029. Epub 2018 Jun 7. Review.

PMID:
29935929
7.

Complete and Annotated Genome Sequence of the Sourdough Lactic Acid Bacterium Lactobacillus fermentum IMDO 130101.

Verce M, De Vuyst L, Weckx S.

Genome Announc. 2018 May 10;6(19). pii: e00256-18. doi: 10.1128/genomeA.00256-18.

9.

Carrot Juice Fermentations as Man-Made Microbial Ecosystems Dominated by Lactic Acid Bacteria.

Wuyts S, Van Beeck W, Oerlemans EFM, Wittouck S, Claes IJJ, De Boeck I, Weckx S, Lievens B, De Vuyst L, Lebeer S.

Appl Environ Microbiol. 2018 May 31;84(12). pii: e00134-18. doi: 10.1128/AEM.00134-18. Print 2018 Jun 15.

10.

Exploring the Impacts of Postharvest Processing on the Microbiota and Metabolite Profiles during Green Coffee Bean Production.

De Bruyn F, Zhang SJ, Pothakos V, Torres J, Lambot C, Moroni AV, Callanan M, Sybesma W, Weckx S, De Vuyst L.

Appl Environ Microbiol. 2016 Dec 15;83(1). pii: e02398-16. doi: 10.1128/AEM.02398-16. Print 2017 Jan 1.

11.

Bifidobacterial inulin-type fructan degradation capacity determines cross-feeding interactions between bifidobacteria and Faecalibacterium prausnitzii.

Moens F, Weckx S, De Vuyst L.

Int J Food Microbiol. 2016 Aug 16;231:76-85. doi: 10.1016/j.ijfoodmicro.2016.05.015. Epub 2016 May 12.

PMID:
27233082
12.

Assessment of the contribution of cocoa-derived strains of Acetobacter ghanensis and Acetobacter senegalensis to the cocoa bean fermentation process through a genomic approach.

Illeghems K, Pelicaen R, De Vuyst L, Weckx S.

Food Microbiol. 2016 Sep;58:68-78. doi: 10.1016/j.fm.2016.03.013. Epub 2016 Mar 29.

PMID:
27217361
13.

The cocoa bean fermentation process: from ecosystem analysis to starter culture development.

De Vuyst L, Weckx S.

J Appl Microbiol. 2016 Jul;121(1):5-17. doi: 10.1111/jam.13045. Epub 2016 Feb 13. Review.

15.

Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides.

Rivière A, Gagnon M, Weckx S, Roy D, De Vuyst L.

Appl Environ Microbiol. 2015 Nov;81(22):7767-81. doi: 10.1128/AEM.02089-15. Epub 2015 Aug 28.

16.
17.

Microbial communities involved in Kaşar cheese ripening.

Aydemir O, Harth H, Weckx S, Dervişoğlu M, De Vuyst L.

Food Microbiol. 2015 Apr;46:587-595. doi: 10.1016/j.fm.2014.10.002. Epub 2014 Oct 16.

PMID:
25475332
18.

Coagulase-negative Staphylococci favor conversion of arginine into ornithine despite a widespread genetic potential for nitric oxide synthase activity.

Sánchez Mainar M, Weckx S, Leroy F.

Appl Environ Microbiol. 2014 Dec;80(24):7741-51. doi: 10.1128/AEM.02298-14. Epub 2014 Oct 3.

19.

Microbial ecology of sourdough fermentations: diverse or uniform?

De Vuyst L, Van Kerrebroeck S, Harth H, Huys G, Daniel HM, Weckx S.

Food Microbiol. 2014 Feb;37:11-29. doi: 10.1016/j.fm.2013.06.002. Epub 2013 Jun 18. Review.

PMID:
24230469
20.

The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent.

Rivière A, Moens F, Selak M, Maes D, Weckx S, De Vuyst L.

Appl Environ Microbiol. 2014 Jan;80(1):204-17. doi: 10.1128/AEM.02853-13. Epub 2013 Oct 18.

21.
22.

A putative transport protein is involved in citrulline excretion and re-uptake during arginine deiminase pathway activity by Lactobacillus sakei.

Rimaux T, Rivière A, Hebert EM, Mozzi F, Weckx S, De Vuyst L, Leroy F.

Res Microbiol. 2013 Apr;164(3):216-25. doi: 10.1016/j.resmic.2012.11.004. Epub 2012 Nov 23.

PMID:
23178175
23.

Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity.

Illeghems K, De Vuyst L, Papalexandratou Z, Weckx S.

PLoS One. 2012;7(5):e38040. doi: 10.1371/journal.pone.0038040. Epub 2012 May 29.

24.

Expression of the arginine deiminase pathway genes in Lactobacillus sakei is strain dependent and is affected by the environmental pH.

Rimaux T, Rivière A, Illeghems K, Weckx S, De Vuyst L, Leroy F.

Appl Environ Microbiol. 2012 Jul;78(14):4874-83. doi: 10.1128/AEM.07724-11. Epub 2012 Apr 27.

25.

Linoleate isomerase activity occurs in lactic acid bacteria strains and is affected by pH and temperature.

Gorissen L, Weckx S, Vlaeminck B, Raes K, De Vuyst L, De Smet S, Leroy F.

J Appl Microbiol. 2011 Sep;111(3):593-606. doi: 10.1111/j.1365-2672.2011.05087.x. Epub 2011 Jul 12.

26.

Adaptation of Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, to growth in wheat sourdough simulation medium at different pH values through differential gene expression.

Vrancken G, De Vuyst L, Rimaux T, Allemeersch J, Weckx S.

Appl Environ Microbiol. 2011 May;77(10):3406-12. doi: 10.1128/AEM.02668-10. Epub 2011 Apr 1.

27.

Influence of temperature and backslopping time on the microbiota of a type I propagated laboratory wheat sourdough fermentation.

Vrancken G, Rimaux T, Weckx S, Leroy F, De Vuyst L.

Appl Environ Microbiol. 2011 Apr;77(8):2716-26. doi: 10.1128/AEM.02470-10. Epub 2011 Feb 18.

28.

Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations.

Weckx S, Allemeersch J, Van der Meulen R, Vrancken G, Huys G, Vandamme P, Van Hummelen P, De Vuyst L.

Appl Environ Microbiol. 2011 Jan;77(2):618-26. doi: 10.1128/AEM.02028-10. Epub 2010 Nov 19.

29.

Lactic acid bacteria community dynamics and metabolite production of rye sourdough fermentations share characteristics of wheat and spelt sourdough fermentations.

Weckx S, Van der Meulen R, Maes D, Scheirlinck I, Huys G, Vandamme P, De Vuyst L.

Food Microbiol. 2010 Dec;27(8):1000-8. doi: 10.1016/j.fm.2010.06.005. Epub 2010 Jun 25.

PMID:
20832677
30.

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome.

Weckx S, Van der Meulen R, Allemeersch J, Huys G, Vandamme P, Van Hummelen P, De Vuyst L.

Appl Environ Microbiol. 2010 Aug;76(16):5402-8. doi: 10.1128/AEM.00570-10. Epub 2010 Jun 25.

31.

Production of conjugated linoleic acid and conjugated linolenic acid isomers by Bifidobacterium species.

Gorissen L, Raes K, Weckx S, Dannenberger D, Leroy F, De Vuyst L, De Smet S.

Appl Microbiol Biotechnol. 2010 Aug;87(6):2257-66. doi: 10.1007/s00253-010-2713-1. Epub 2010 Jun 17.

PMID:
20556602
32.

Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota.

De Vuyst L, Vrancken G, Ravyts F, Rimaux T, Weckx S.

Food Microbiol. 2009 Oct;26(7):666-75. doi: 10.1016/j.fm.2009.07.012. Epub 2009 Jul 18. Review.

PMID:
19747599
33.

Environmental pH determines citrulline and ornithine release through the arginine deiminase pathway in Lactobacillus fermentum IMDO 130101.

Vrancken G, Rimaux T, Weckx S, De Vuyst L, Leroy F.

Int J Food Microbiol. 2009 Nov 15;135(3):216-22. doi: 10.1016/j.ijfoodmicro.2009.07.035. Epub 2009 Aug 5.

PMID:
19732985
34.

Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria.

Weckx S, Allemeersch J, Van der Meulen R, Vrancken G, Huys G, Vandamme P, Van Hummelen P, De Vuyst L.

Appl Environ Microbiol. 2009 Oct;75(20):6488-95. doi: 10.1128/AEM.01055-09. Epub 2009 Aug 14.

35.

Metagenome and metatranscriptome analysis: does the flag always cover the cargo?

Weckx S, De Vuyst L.

Int J Food Microbiol. 2009 Aug 15;133(3):292-3. doi: 10.1016/j.ijfoodmicro.2009.05.001. Epub 2009 May 5. No abstract available.

PMID:
19446906
36.

In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes.

Falony G, Lazidou K, Verschaeren A, Weckx S, Maes D, De Vuyst L.

Appl Environ Microbiol. 2009 Jan;75(2):454-61. doi: 10.1128/AEM.01488-08. Epub 2008 Nov 14.

37.

Thermodynamic behavior of short oligonucleotides in microarray hybridizations can be described using Gibbs free energy in a nearest-neighbor model.

Weckx S, Carlon E, DeVuyst L, Van Hummelen P.

J Phys Chem B. 2007 Dec 6;111(48):13583-90. Epub 2007 Nov 10.

PMID:
17994724
38.

SNPbox: web-based high-throughput primer design with an eye for repetitive sequences.

Weckx S, De Rijk P, Glassee W, Van Broeckhoven C, Del-Favero J.

Methods Mol Biol. 2007;402:179-200. Review.

PMID:
17951796
39.

Linkage and association studies identify a novel locus for Alzheimer disease at 7q36 in a Dutch population-based sample.

Rademakers R, Cruts M, Sleegers K, Dermaut B, Theuns J, Aulchenko Y, Weckx S, De Pooter T, Van den Broeck M, Corsmit E, De Rijk P, Del-Favero J, van Swieten J, van Duijn CM, Van Broeckhoven C.

Am J Hum Genet. 2005 Oct;77(4):643-52. Epub 2005 Aug 30.

40.

Synaptopodin and 4 novel genes identified in primary sensory neurons.

Verpoorten N, Verhoeven K, Weckx S, Jacobs A, Serneels S, Del Favero J, Ceuterick C, Van Bockstaele DR, Berneman ZN, Van den Bosch L, Robberecht W, Nobbio L, Schenone A, Dessaud E, deLapeyrière O, Huylebroeck D, Zwijsen A, De Jonghe P, Timmerman V.

Mol Cell Neurosci. 2005 Nov;30(3):316-25. Epub 2005 Sep 1.

PMID:
16139508
41.

novoSNP, a novel computational tool for sequence variation discovery.

Weckx S, Del-Favero J, Rademakers R, Claes L, Cruts M, De Jonghe P, Van Broeckhoven C, De Rijk P.

Genome Res. 2005 Mar;15(3):436-42.

42.

De novo KCNQ2 mutations in patients with benign neonatal seizures.

Claes LR, Ceulemans B, Audenaert D, Deprez L, Jansen A, Hasaerts D, Weckx S, Claeys KG, Del-Favero J, Van Broeckhoven C, De Jonghe P.

Neurology. 2004 Dec 14;63(11):2155-8.

PMID:
15596769
43.

SNPbox: a modular software package for large-scale primer design.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Bioinformatics. 2005 Feb 1;21(3):385-7. Epub 2004 Sep 3.

PMID:
15347573
44.

SNPbox: web-based high-throughput primer design from gene to genome.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W170-2.

45.

SSHSuite: an integrated software package for analysis of large-scale suppression subtractive hybridization data.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Biotechniques. 2004 Jun;36(6):1043-5.

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