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The High Light Response in Arabidopsis Requires the Calcium Sensor Protein CAS, a Target of STN7- and STN8-Mediated Phosphorylation.

Cutolo E, Parvin N, Ruge H, Pirayesh N, Roustan V, Weckwerth W, Teige M, Grieco M, Larosa V, Vothknecht UC.

Front Plant Sci. 2019 Jul 30;10:974. doi: 10.3389/fpls.2019.00974. eCollection 2019.


Subcellular dynamics of proteins and metabolites under abiotic stress reveal deferred response of the Arabidopsis thaliana hexokinase-1 mutant gin2-1 to high light.

Küstner L, Fürtauer L, Weckwerth W, Nägele T, Heyer AG.

Plant J. 2019 Aug 6. doi: 10.1111/tpj.14491. [Epub ahead of print]


Male Sterility in Maize after Transient Heat Stress during the Tetrad Stage of Pollen Development.

Begcy K, Nosenko T, Zhou LZ, Fragner L, Weckwerth W, Dresselhaus T.

Plant Physiol. 2019 Aug 4. pii: pp.00707.2019. doi: 10.1104/pp.19.00707. [Epub ahead of print]


Resolving subcellular plant metabolism.

Fürtauer L, Küstner L, Weckwerth W, Heyer AG, Nägele T.

Plant J. 2019 Jul 30. doi: 10.1111/tpj.14472. [Epub ahead of print]


Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions.

Ott E, Kawaguchi Y, Özgen N, Yamagishi A, Rabbow E, Rettberg P, Weckwerth W, Milojevic T.

Front Microbiol. 2019 Apr 29;10:909. doi: 10.3389/fmicb.2019.00909. eCollection 2019.


Combination of Hypoglycemia and Metformin Impairs Tumor Metabolic Plasticity and Growth by Modulating the PP2A-GSK3β-MCL-1 Axis.

Elgendy M, Cirò M, Hosseini A, Weiszmann J, Mazzarella L, Ferrari E, Cazzoli R, Curigliano G, DeCensi A, Bonanni B, Budillon A, Pelicci PG, Janssens V, Ogris M, Baccarini M, Lanfrancone L, Weckwerth W, Foiani M, Minucci S.

Cancer Cell. 2019 May 13;35(5):798-815.e5. doi: 10.1016/j.ccell.2019.03.007. Epub 2019 Apr 25.


Molecular Mechanisms of Tungsten Toxicity Differ for Glycine max Depending on Nitrogen Regime.

Preiner J, Wienkoop S, Weckwerth W, Oburger E.

Front Plant Sci. 2019 Apr 2;10:367. doi: 10.3389/fpls.2019.00367. eCollection 2019.


Plastic and genetic responses of a common sedge to warming have contrasting effects on carbon cycle processes.

Walker TWN, Weckwerth W, Bragazza L, Fragner L, Forde BG, Ostle NJ, Signarbieux C, Sun X, Ward SE, Bardgett RD.

Ecol Lett. 2019 Jan;22(1):159-169. doi: 10.1111/ele.13178. Epub 2018 Nov 22.


Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii.

Roustan V, Weckwerth W.

Front Plant Sci. 2018 Nov 28;9:1590. doi: 10.3389/fpls.2018.01590. eCollection 2018.


Antioxidant Properties and the Formation of Iron Coordination Complexes of 8-Hydroxyquinoline.

Chobot V, Hadacek F, Bachmann G, Weckwerth W, Kubicova L.

Int J Mol Sci. 2018 Dec 7;19(12). pii: E3917. doi: 10.3390/ijms19123917.


Proteomics of Heat-Stress and Ethylene-Mediated Thermotolerance Mechanisms in Tomato Pollen Grains.

Jegadeesan S, Chaturvedi P, Ghatak A, Pressman E, Meir S, Faigenboim A, Rutley N, Beery A, Harel A, Weckwerth W, Firon N.

Front Plant Sci. 2018 Nov 12;9:1558. doi: 10.3389/fpls.2018.01558. eCollection 2018.


Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field.

Nagler M, Nägele T, Gilli C, Fragner L, Korte A, Platzer A, Farlow A, Nordborg M, Weckwerth W.

Front Plant Sci. 2018 Nov 6;9:1556. doi: 10.3389/fpls.2018.01556. eCollection 2018.


Combined multivariate analysis and machine learning reveals a predictive module of metabolic stress response in Arabidopsis thaliana.

Fürtauer L, Pschenitschnigg A, Scharkosi H, Weckwerth W, Nägele T.

Mol Omics. 2018 Dec 3;14(6):437-449. doi: 10.1039/c8mo00095f.


Deciphering key proteins of oil palm (Elaeis guineensis Jacq.) fruit mesocarp development by proteomics and chemometrics.

Hassan H, Amiruddin MD, Weckwerth W, Ramli US.

Electrophoresis. 2019 Jan;40(2):254-265. doi: 10.1002/elps.201800232. Epub 2018 Nov 7.


Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1).

Roustan V, Roustan PJ, Weidinger M, Reipert S, Kapusi E, Shabrangy A, Stoger E, Weckwerth W, Ibl V.

Front Plant Sci. 2018 Sep 10;9:1248. doi: 10.3389/fpls.2018.01248. eCollection 2018.


Vacuolar sucrose cleavage prevents limitation of cytosolic carbohydrate metabolism and stabilizes photosynthesis under abiotic stress.

Weiszmann J, Fürtauer L, Weckwerth W, Nägele T.

FEBS J. 2018 Nov;285(21):4082-4098. doi: 10.1111/febs.14656. Epub 2018 Sep 28.


Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm.

Shabrangy A, Roustan V, Reipert S, Weidinger M, Roustan PJ, Stoger E, Weckwerth W, Ibl V.

Front Plant Sci. 2018 Jun 13;9:775. doi: 10.3389/fpls.2018.00775. eCollection 2018.


Sumoylation and phosphorylation: hidden and overt links.

Tomanov K, Nukarinen E, Vicente J, Mendiondo GM, Winter N, Nehlin L, Weckwerth W, Holdsworth MJ, Teige M, Bachmair A.

J Exp Bot. 2018 Aug 31;69(19):4583-4590. doi: 10.1093/jxb/ery167.


Glycolate Induces Redox Tuning Of Photosystem II in Vivo: Study of a Photorespiration Mutant.

Messant M, Timm S, Fantuzzi A, Weckwerth W, Bauwe H, Rutherford AW, Krieger-Liszkay A.

Plant Physiol. 2018 Jul;177(3):1277-1285. doi: 10.1104/pp.18.00341. Epub 2018 May 23.


Mathematical Modeling Approaches in Plant Metabolomics.

Fürtauer L, Weiszmann J, Weckwerth W, Nägele T.

Methods Mol Biol. 2018;1778:329-347. doi: 10.1007/978-1-4939-7819-9_24.


Studying AMPK in an Evolutionary Context.

Jain A, Roustan V, Weckwerth W, Ebersberger I.

Methods Mol Biol. 2018;1732:111-142. doi: 10.1007/978-1-4939-7598-3_8.


Metabolomics in Plant Stress Physiology.

Ghatak A, Chaturvedi P, Weckwerth W.

Adv Biochem Eng Biotechnol. 2018;164:187-236. doi: 10.1007/10_2017_55. Review.


Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.

Pedrotti L, Weiste C, Nägele T, Wolf E, Lorenzin F, Dietrich K, Mair A, Weckwerth W, Teige M, Baena-González E, Dröge-Laser W.

Plant Cell. 2018 Feb;30(2):495-509. doi: 10.1105/tpc.17.00414. Epub 2018 Jan 18.


Combined Metabolomic Analysis of Plasma and Urine Reveals AHBA, Tryptophan and Serotonin Metabolism as Potential Risk Factors in Gestational Diabetes Mellitus (GDM).

Leitner M, Fragner L, Danner S, Holeschofsky N, Leitner K, Tischler S, Doerfler H, Bachmann G, Sun X, Jaeger W, Kautzky-Willer A, Weckwerth W.

Front Mol Biosci. 2017 Dec 21;4:84. doi: 10.3389/fmolb.2017.00084. eCollection 2017.


The SnRK1 Kinase as Central Mediator of Energy Signaling between Different Organelles.

Wurzinger B, Nukarinen E, Nägele T, Weckwerth W, Teige M.

Plant Physiol. 2018 Feb;176(2):1085-1094. doi: 10.1104/pp.17.01404. Epub 2018 Jan 8. Review. No abstract available.


Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission.

Ott E, Kawaguchi Y, Kölbl D, Chaturvedi P, Nakagawa K, Yamagishi A, Weckwerth W, Milojevic T.

PLoS One. 2017 Dec 15;12(12):e0189381. doi: 10.1371/journal.pone.0189381. eCollection 2017.


Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii.

Roustan V, Bakhtiari S, Roustan PJ, Weckwerth W.

Biotechnol Biofuels. 2017 Nov 28;10:280. doi: 10.1186/s13068-017-0949-z. eCollection 2017.


Redox state-dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals.

Wurzinger B, Mair A, Fischer-Schrader K, Nukarinen E, Roustan V, Weckwerth W, Teige M.

FEBS Lett. 2017 Nov;591(21):3625-3636. doi: 10.1002/1873-3468.12852. Epub 2017 Oct 4.


Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.


Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection.

Stare T, Stare K, Weckwerth W, Wienkoop S, Gruden K.

Proteomes. 2017 Jul 6;5(3). pii: E14. doi: 10.3390/proteomes5030014.


Cereal Crop Proteomics: Systemic Analysis of Crop Drought Stress Responses Towards Marker-Assisted Selection Breeding.

Ghatak A, Chaturvedi P, Weckwerth W.

Front Plant Sci. 2017 Jun 2;8:757. doi: 10.3389/fpls.2017.00757. eCollection 2017. Review.


Proteomics survey of Solanaceae family: Current status and challenges ahead.

Ghatak A, Chaturvedi P, Paul P, Agrawal GK, Rakwal R, Kim ST, Weckwerth W, Gupta R.

J Proteomics. 2017 Oct 3;169:41-57. doi: 10.1016/j.jprot.2017.05.016. Epub 2017 May 18. Review.


Protein sumoylation and phosphorylation intersect in Arabidopsis signaling.

Nukarinen E, Tomanov K, Ziba I, Weckwerth W, Bachmair A.

Plant J. 2017 Aug;91(3):505-517. doi: 10.1111/tpj.13575. Epub 2017 Jun 4.


Erratum to: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction.

Stare T, Ramšak Ž, Blejec A, Stare K, Turnšek N, Weckwerth W, Wienkoop S, Vodnik D, Gruden K.

BMC Genomics. 2017 Mar 13;18(1):226. doi: 10.1186/s12864-017-3611-z. No abstract available.


Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms in Pinus radiata.

Pascual J, Cañal MJ, Escandón M, Meijón M, Weckwerth W, Valledor L.

Mol Cell Proteomics. 2017 Mar;16(3):485-501. doi: 10.1074/mcp.M116.059436. Epub 2017 Jan 17.


Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression.

Linke M, Pham HT, Katholnig K, Schnöller T, Miller A, Demel F, Schütz B, Rosner M, Kovacic B, Sukhbaatar N, Niederreiter B, Blüml S, Kuess P, Sexl V, Müller M, Mikula M, Weckwerth W, Haschemi A, Susani M, Hengstschläger M, Gambello MJ, Weichhart T.

Nat Immunol. 2017 Mar;18(3):293-302. doi: 10.1038/ni.3655. Epub 2017 Jan 16.


A Benchtop Fractionation Procedure for Subcellular Analysis of the Plant Metabolome.

Fürtauer L, Weckwerth W, Nägele T.

Front Plant Sci. 2016 Dec 22;7:1912. doi: 10.3389/fpls.2016.01912. eCollection 2016.


Pro- and Antioxidant Activity of Three Selected Flavan Type Flavonoids: Catechin, Eriodictyol and Taxifolin.

Chobot V, Hadacek F, Bachmann G, Weckwerth W, Kubicova L.

Int J Mol Sci. 2016 Nov 26;17(12). pii: E1986.


Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

Kerou M, Offre P, Valledor L, Abby SS, Melcher M, Nagler M, Weckwerth W, Schleper C.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7937-E7946. Epub 2016 Nov 18.


Subcellular reprogramming of metabolism during cold acclimation in Arabidopsis thaliana.

Hoermiller II, Naegele T, Augustin H, Stutz S, Weckwerth W, Heyer AG.

Plant Cell Environ. 2017 May;40(5):602-610. doi: 10.1111/pce.12836. Epub 2016 Oct 24.


Lichen secondary metabolites affect growth of Physcomitrella patens by allelopathy.

Goga M, Antreich SJ, Bačkor M, Weckwerth W, Lang I.

Protoplasma. 2017 May;254(3):1307-1315. doi: 10.1007/s00709-016-1022-7. Epub 2016 Sep 19.


Cajanus cajan- a source of PPARγ activators leading to anti-inflammatory and cytotoxic effects.

Schuster R, Holzer W, Doerfler H, Weckwerth W, Viernstein H, Okonogi S, Mueller M.

Food Funct. 2016 Sep 14;7(9):3798-806. doi: 10.1039/c6fo00689b. Epub 2016 Sep 6.


Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation.

Nukarinen E, Nägele T, Pedrotti L, Wurzinger B, Mair A, Landgraf R, Börnke F, Hanson J, Teige M, Baena-Gonzalez E, Dröge-Laser W, Weckwerth W.

Sci Rep. 2016 Aug 22;6:31697. doi: 10.1038/srep31697.


Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis.

Furuhashi T, Nakamura T, Fragner L, Roustan V, Schön V, Weckwerth W.

Biotechnol J. 2016 Oct;11(10):1262-1267. doi: 10.1002/biot.201400197. Epub 2016 Aug 11.


Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera).

Wang L, Fu J, Li M, Fragner L, Weckwerth W, Yang P.

Front Plant Sci. 2016 Jun 7;7:750. doi: 10.3389/fpls.2016.00750. eCollection 2016.


Pollen proteomics: from stress physiology to developmental priming.

Chaturvedi P, Ghatak A, Weckwerth W.

Plant Reprod. 2016 Jun;29(1-2):119-32. doi: 10.1007/s00497-016-0283-9. Epub 2016 Jun 8. Review.


An evolutionary perspective of AMPK-TOR signaling in the three domains of life.

Roustan V, Jain A, Teige M, Ebersberger I, Weckwerth W.

J Exp Bot. 2016 Jun;67(13):3897-907. doi: 10.1093/jxb/erw211. Epub 2016 Jun 6.


Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Dorée Phytoplasma.

Prezelj N, Covington E, Roitsch T, Gruden K, Fragner L, Weckwerth W, Chersicola M, Vodopivec M, Dermastia M.

Front Plant Sci. 2016 May 23;7:711. doi: 10.3389/fpls.2016.00711. eCollection 2016.


Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles.

Alegre S, Pascual J, Nagler M, Weckwerth W, Cañal MJ, Valledor L.

Data Brief. 2016 Apr 7;7:1477-82. doi: 10.1016/j.dib.2016.03.074. eCollection 2016 Jun.

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