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Items: 1 to 50 of 92

1.

Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis).

Henriques D, Parejo M, Vignal A, Wragg D, Wallberg A, Webster MT, Pinto MA.

Evol Appl. 2018 Mar 30;11(8):1270-1282. doi: 10.1111/eva.12623. eCollection 2018 Sep.

2.

Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula.

Henriques D, Wallberg A, Chávez-Galarza J, Johnston JS, Webster MT, Pinto MA.

Sci Rep. 2018 Jul 24;8(1):11145. doi: 10.1038/s41598-018-29469-5.

3.

Blocking extracellular activation of myostatin as a strategy for treating muscle wasting.

Pirruccello-Straub M, Jackson J, Wawersik S, Webster MT, Salta L, Long K, McConaughy W, Capili A, Boston C, Carven GJ, Mahanthappa NK, Turner KJ, Donovan A.

Sci Rep. 2018 Feb 2;8(1):2292. doi: 10.1038/s41598-018-20524-9.

4.

Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants.

Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L, Webster MT.

Genome Biol Evol. 2018 Jan 1;10(1):276-290. doi: 10.1093/gbe/evy004.

5.

Rapid hybrid speciation in Darwin's finches.

Lamichhaney S, Han F, Webster MT, Andersson L, Grant BR, Grant PR.

Science. 2018 Jan 12;359(6372):224-228. doi: 10.1126/science.aao4593. Epub 2017 Nov 23.

PMID:
29170277
6.

A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog.

Montero-Mendieta S, Grabherr M, Lantz H, De la Riva I, Leonard JA, Webster MT, Vilà C.

PeerJ. 2017 Sep 1;5:e3702. doi: 10.7717/peerj.3702. eCollection 2017.

7.

Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees.

Wallberg A, Schöning C, Webster MT, Hasselmann M.

PLoS Genet. 2017 May 25;13(5):e1006792. doi: 10.1371/journal.pgen.1006792. eCollection 2017 May.

8.

Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches.

Han F, Lamichhaney S, Grant BR, Grant PR, Andersson L, Webster MT.

Genome Res. 2017 Jun;27(6):1004-1015. doi: 10.1101/gr.212522.116. Epub 2017 Apr 25.

9.

Quantitative 3D Time Lapse Imaging of Muscle Progenitors in Skeletal Muscle of Live Mice.

Webster MT, Harvey T, Fan CM.

Bio Protoc. 2016 Dec 20;6(24). pii: e2066. doi: 10.21769/BioProtoc.2066.

10.

Genomewide analysis of admixture and adaptation in the Africanized honeybee.

Nelson RM, Wallberg A, Simões ZLP, Lawson DJ, Webster MT.

Mol Ecol. 2017 Jul;26(14):3603-3617. doi: 10.1111/mec.14122. Epub 2017 Apr 24.

PMID:
28378497
11.

Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample.

Gilks WP, Pennell TM, Flis I, Webster MT, Morrow EH.

Version 3. F1000Res. 2016 Nov 7 [revised 2016 Jan 1];5:2644. doi: 10.12688/f1000research.9912.3. eCollection 2016.

12.

Identification of Multiple Loci Associated with Social Parasitism in Honeybees.

Wallberg A, Pirk CW, Allsopp MH, Webster MT.

PLoS Genet. 2016 Jun 9;12(6):e1006097. doi: 10.1371/journal.pgen.1006097. eCollection 2016 Jun.

13.

A beak size locus in Darwin's finches facilitated character displacement during a drought.

Lamichhaney S, Han F, Berglund J, Wang C, Almén MS, Webster MT, Grant BR, Grant PR, Andersson L.

Science. 2016 Apr 22;352(6284):470-4. doi: 10.1126/science.aad8786.

14.

Intravital Imaging Reveals Ghost Fibers as Architectural Units Guiding Myogenic Progenitors during Regeneration.

Webster MT, Manor U, Lippincott-Schwartz J, Fan CM.

Cell Stem Cell. 2016 Feb 4;18(2):243-52. doi: 10.1016/j.stem.2015.11.005. Epub 2015 Dec 10.

15.

Adaptive radiation of Darwin's finches revisited using whole genome sequencing.

Almén MS, Lamichhaney S, Berglund J, Grant BR, Grant PR, Webster MT, Andersson L.

Bioessays. 2016 Jan;38(1):14-20. doi: 10.1002/bies.201500079. Epub 2015 Nov 25. Review.

PMID:
26606649
16.

Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds.

Webster MT, Kamgari N, Perloski M, Hoeppner MP, Axelsson E, Hedhammar Å, Pielberg G, Lindblad-Toh K.

BMC Genomics. 2015 Jun 23;16:474. doi: 10.1186/s12864-015-1702-2.

17.

Extreme recombination frequencies shape genome variation and evolution in the honeybee, Apis mellifera.

Wallberg A, Glémin S, Webster MT.

PLoS Genet. 2015 Apr 22;11(4):e1005189. doi: 10.1371/journal.pgen.1005189. eCollection 2015 Apr.

18.

Evolution of Darwin's finches and their beaks revealed by genome sequencing.

Lamichhaney S, Berglund J, Almén MS, Maqbool K, Grabherr M, Martinez-Barrio A, Promerová M, Rubin CJ, Wang C, Zamani N, Grant BR, Grant PR, Webster MT, Andersson L.

Nature. 2015 Feb 19;518(7539):371-5. doi: 10.1038/nature14181. Epub 2015 Feb 11.

PMID:
25686609
19.

Germline methylation patterns determine the distribution of recombination events in the dog genome.

Berglund J, Quilez J, Arndt PF, Webster MT.

Genome Biol Evol. 2014 Dec 19;7(2):522-30. doi: 10.1093/gbe/evu282.

20.

Acute tissue injury activates satellite cells and promotes sarcoma formation via the HGF/c-MET signaling pathway.

Van Mater D, Añó L, Blum JM, Webster MT, Huang W, Williams N, Ma Y, Cardona DM, Fan CM, Kirsch DG.

Cancer Res. 2015 Feb 1;75(3):605-14. doi: 10.1158/0008-5472.CAN-14-2527. Epub 2014 Dec 12.

21.

A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera.

Wallberg A, Han F, Wellhagen G, Dahle B, Kawata M, Haddad N, Simões ZL, Allsopp MH, Kandemir I, De la Rúa P, Pirk CW, Webster MT.

Nat Genet. 2014 Oct;46(10):1081-8. doi: 10.1038/ng.3077. Epub 2014 Aug 24.

PMID:
25151355
22.

Analysis of structural diversity in wolf-like canids reveals post-domestication variants.

Ramirez O, Olalde I, Berglund J, Lorente-Galdos B, Hernandez-Rodriguez J, Quilez J, Webster MT, Wayne RK, Lalueza-Fox C, Vilà C, Marques-Bonet T.

BMC Genomics. 2014 Jun 12;15:465. doi: 10.1186/1471-2164-15-465.

23.

Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array.

Molin AM, Berglund J, Webster MT, Lindblad-Toh K.

BMC Genomics. 2014 Mar 19;15:210. doi: 10.1186/1471-2164-15-210.

24.

c-MET regulates myoblast motility and myocyte fusion during adult skeletal muscle regeneration.

Webster MT, Fan CM.

PLoS One. 2013 Nov 19;8(11):e81757. doi: 10.1371/journal.pone.0081757. eCollection 2013.

25.

The ESR1 gene is associated with risk for canine mammary tumours.

Borge KS, Melin M, Rivera P, Thoresen SI, Webster MT, von Euler H, Lindblad-Toh K, Lingaas F.

BMC Vet Res. 2013 Apr 10;9:69. doi: 10.1186/1746-6148-9-69.

26.

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.

Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, Grant BR, Eisen JA, Abzhanov A, Ponting CP.

BMC Genomics. 2013 Feb 12;14:95. doi: 10.1186/1471-2164-14-95.

27.

The genomic signature of dog domestication reveals adaptation to a starch-rich diet.

Axelsson E, Ratnakumar A, Arendt ML, Maqbool K, Webster MT, Perloski M, Liberg O, Arnemo JM, Hedhammar A, Lindblad-Toh K.

Nature. 2013 Mar 21;495(7441):360-4. doi: 10.1038/nature11837. Epub 2013 Jan 23.

PMID:
23354050
28.

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring.

Lamichhaney S, Martinez Barrio A, Rafati N, Sundström G, Rubin CJ, Gilbert ER, Berglund J, Wetterbom A, Laikre L, Webster MT, Grabherr M, Ryman N, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19345-50. doi: 10.1073/pnas.1216128109. Epub 2012 Nov 7.

29.

From where did the Western honeybee (Apis mellifera) originate?

Han F, Wallberg A, Webster MT.

Ecol Evol. 2012 Aug;2(8):1949-57. doi: 10.1002/ece3.312. Epub 2012 Jul 12.

30.

Novel origins of copy number variation in the dog genome.

Berglund J, Nevalainen EM, Molin AM, Perloski M; LUPA Consortium, André C, Zody MC, Sharpe T, Hitte C, Lindblad-Toh K, Lohi H, Webster MT.

Genome Biol. 2012 Aug 23;13(8):R73. doi: 10.1186/gb-2012-13-8-r73.

31.

Two loci on chromosome 5 are associated with serum IgE levels in Labrador retrievers.

Owczarek-Lipska M, Lauber B, Molitor V, Meury S, Kierczak M, Tengvall K, Webster MT, Jagannathan V, Schlotter Y, Willemse T, Hendricks A, Bergvall K, Hedhammar A, Andersson G, Lindblad-Toh K, Favrot C, Roosje P, Marti E, Leeb T.

PLoS One. 2012;7(6):e39176. doi: 10.1371/journal.pone.0039176. Epub 2012 Jun 15.

32.

The budding yeast nuclear envelope adjacent to the nucleolus serves as a membrane sink during mitotic delay.

Witkin KL, Chong Y, Shao S, Webster MT, Lahiri S, Walters AD, Lee B, Koh JL, Prinz WA, Andrews BJ, Cohen-Fix O.

Curr Biol. 2012 Jun 19;22(12):1128-33. doi: 10.1016/j.cub.2012.04.022. Epub 2012 May 31.

33.

Rethinking dog domestication by integrating genetics, archeology, and biogeography.

Larson G, Karlsson EK, Perri A, Webster MT, Ho SY, Peters J, Stahl PW, Piper PJ, Lingaas F, Fredholm M, Comstock KE, Modiano JF, Schelling C, Agoulnik AI, Leegwater PA, Dobney K, Vigne JD, Vilà C, Andersson L, Lindblad-Toh K.

Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8878-83. doi: 10.1073/pnas.1203005109. Epub 2012 May 21.

34.

Direct and indirect consequences of meiotic recombination: implications for genome evolution.

Webster MT, Hurst LD.

Trends Genet. 2012 Mar;28(3):101-9. doi: 10.1016/j.tig.2011.11.002. Epub 2011 Dec 7.

PMID:
22154475
35.

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Fall T, Seppälä EH, Hansen MS, Lawley CT, Karlsson EK; LUPA Consortium, Bannasch D, Vilà C, Lohi H, Galibert F, Fredholm M, Häggström J, Hedhammar A, André C, Lindblad-Toh K, Hitte C, Webster MT.

PLoS Genet. 2011 Oct;7(10):e1002316. doi: 10.1371/journal.pgen.1002316. Epub 2011 Oct 13.

36.

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome.

Axelsson E, Webster MT, Ratnakumar A; LUPA Consortium, Ponting CP, Lindblad-Toh K.

Genome Res. 2012 Jan;22(1):51-63. doi: 10.1101/gr.124123.111. Epub 2011 Oct 17. Erratum in: Genome Res. 2012 Apr;22(4):810.

37.

LGI2 truncation causes a remitting focal epilepsy in dogs.

Seppälä EH, Jokinen TS, Fukata M, Fukata Y, Webster MT, Karlsson EK, Kilpinen SK, Steffen F, Dietschi E, Leeb T, Eklund R, Zhao X, Rilstone JJ, Lindblad-Toh K, Minassian BA, Lohi H.

PLoS Genet. 2011 Jul;7(7):e1002194. doi: 10.1371/journal.pgen.1002194. Epub 2011 Jul 28.

38.

A locus on chromosome 5 is associated with dilated cardiomyopathy in Doberman Pinschers.

Mausberg TB, Wess G, Simak J, Keller L, Drögemüller M, Drögemüller C, Webster MT, Stephenson H, Dukes-McEwan J, Leeb T.

PLoS One. 2011;6(5):e20042. doi: 10.1371/journal.pone.0020042. Epub 2011 May 20.

39.

A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs.

Olsson M, Meadows JR, Truvé K, Rosengren Pielberg G, Puppo F, Mauceli E, Quilez J, Tonomura N, Zanna G, Docampo MJ, Bassols A, Avery AC, Karlsson EK, Thomas A, Kastner DL, Bongcam-Rudloff E, Webster MT, Sanchez A, Hedhammar A, Remmers EF, Andersson L, Ferrer L, Tintle L, Lindblad-Toh K.

PLoS Genet. 2011 Mar;7(3):e1001332. doi: 10.1371/journal.pgen.1001332. Epub 2011 Mar 17.

40.

Vesicle trafficking maintains nuclear shape in Saccharomyces cerevisiae during membrane proliferation.

Webster MT, McCaffery JM, Cohen-Fix O.

J Cell Biol. 2010 Dec 13;191(6):1079-88. doi: 10.1083/jcb.201006083. Epub 2010 Dec 6.

41.

Detecting positive selection within genomes: the problem of biased gene conversion.

Ratnakumar A, Mousset S, Glémin S, Berglund J, Galtier N, Duret L, Webster MT.

Philos Trans R Soc Lond B Biol Sci. 2010 Aug 27;365(1552):2571-80. doi: 10.1098/rstb.2010.0007.

42.

The recombination landscape of the zebra finch Taeniopygia guttata genome.

Backström N, Forstmeier W, Schielzeth H, Mellenius H, Nam K, Bolund E, Webster MT, Ost T, Schneider M, Kempenaers B, Ellegren H.

Genome Res. 2010 Apr;20(4):485-95. doi: 10.1101/gr.101410.109. Epub 2010 Mar 31.

43.

Localization of canine brachycephaly using an across breed mapping approach.

Bannasch D, Young A, Myers J, Truvé K, Dickinson P, Gregg J, Davis R, Bongcam-Rudloff E, Webster MT, Lindblad-Toh K, Pedersen N.

PLoS One. 2010 Mar 10;5(3):e9632. doi: 10.1371/journal.pone.0009632.

44.

Whole-genome resequencing reveals loci under selection during chicken domestication.

Rubin CJ, Zody MC, Eriksson J, Meadows JR, Sherwood E, Webster MT, Jiang L, Ingman M, Sharpe T, Ka S, Hallböök F, Besnier F, Carlborg O, Bed'hom B, Tixier-Boichard M, Jensen P, Siegel P, Lindblad-Toh K, Andersson L.

Nature. 2010 Mar 25;464(7288):587-91. doi: 10.1038/nature08832. Epub 2010 Mar 10.

PMID:
20220755
45.

Patterns of autosomal divergence between the human and chimpanzee genomes support an allopatric model of speciation.

Webster MT.

Gene. 2009 Aug 15;443(1-2):70-5. doi: 10.1016/j.gene.2009.05.006. Epub 2009 May 20.

PMID:
19463924
46.

Hotspots of biased nucleotide substitutions in human genes.

Berglund J, Pollard KS, Webster MT.

PLoS Biol. 2009 Jan 27;7(1):e26. doi: 10.1371/journal.pbio.1000026.

47.

The legacy of domestication: accumulation of deleterious mutations in the dog genome.

Cruz F, Vilà C, Webster MT.

Mol Biol Evol. 2008 Nov;25(11):2331-6. doi: 10.1093/molbev/msn177. Epub 2008 Aug 9.

PMID:
18689870
48.

The unique genomic properties of sex-biased genes: insights from avian microarray data.

Mank JE, Hultin-Rosenberg L, Webster MT, Ellegren H.

BMC Genomics. 2008 Mar 31;9:148. doi: 10.1186/1471-2164-9-148.

49.

Is there evidence for convergent evolution around human microsatellites?

Webster MT, Hagberg J.

Mol Biol Evol. 2007 May;24(5):1097-100. Epub 2007 Mar 8.

PMID:
17350937
50.

Relaxation of selective constraint on dog mitochondrial DNA following domestication.

Björnerfeldt S, Webster MT, Vilà C.

Genome Res. 2006 Aug;16(8):990-4. Epub 2006 Jun 29.

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