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Predicting functional responses in agro-ecosystems from animal movement data to improve management of invasive pests.

Wilber MQ, Chinn SM, Beasley JC, Boughton RK, Brook RK, Ditchkoff SS, Fischer JW, Hartley SB, Holmstrom LK, Kilgo JC, Lewis JS, Miller RS, Snow NP, VerCauteren KC, Wisely SM, Webb CT, Pepin KM.

Ecol Appl. 2019 Oct 9:e02015. doi: 10.1002/eap.2015. [Epub ahead of print]


Inferring seasonal infection risk at population and regional scales from serology samples.

Wilber MQ, Webb CT, Cunningham FL, Pedersen K, Wan XF, Pepin KM.

Ecology. 2019 Sep 10:e02882. doi: 10.1002/ecy.2882. [Epub ahead of print]


Individual-Level Antibody Dynamics Reveal Potential Drivers of Influenza A Seasonality in Wild Pig Populations.

Pepin KM, Pedersen K, Wan XF, Cunningham FL, Webb CT, Wilber MQ.

Integr Comp Biol. 2019 Nov 1;59(5):1231-1242. doi: 10.1093/icb/icz118.


Entomological risk factors for potential transmission of Rift Valley fever virus around concentrations of livestock in Colorado.

Hartman DA, Rice LM, DeMaria J, Borland EM, Bergren NA, Fagre AC, Robb LL, Webb CT, Kading RC.

Transbound Emerg Dis. 2019 Jul;66(4):1709-1717. doi: 10.1111/tbed.13206. Epub 2019 May 8.


Spatio-temporal patterns and characteristics of swine shipments in the U.S. based on Interstate Certificates of Veterinary Inspection.

Gorsich EE, Miller RS, Mask HM, Hallman C, Portacci K, Webb CT.

Sci Rep. 2019 Mar 8;9(1):3915. doi: 10.1038/s41598-019-40556-z.


Estimating and exploring the proportions of inter- and intrastate cattle shipments in the United States.

Beck-Johnson LM, Hallman C, Miller RS, Portacci K, Gorsich EE, Grear DA, Hartmann K, Webb CT.

Prev Vet Med. 2019 Jan 1;162:56-66. doi: 10.1016/j.prevetmed.2018.11.002. Epub 2018 Nov 8.


Propagule size and structure, life history, and environmental conditions affect establishment success of an invasive species.

Tabak MA, Webb CT, Miller RS.

Sci Rep. 2018 Jul 9;8(1):10313. doi: 10.1038/s41598-018-28654-w.


Maternal antibody and the maintenance of a lyssavirus in populations of seasonally breeding African bats.

Hayman DTS, Luis AD, Restif O, Baker KS, Fooks AR, Leach C, Horton DL, Suu-Ire R, Cunningham AA, Wood JLN, Webb CT.

PLoS One. 2018 Jun 12;13(6):e0198563. doi: 10.1371/journal.pone.0198563. eCollection 2018.


An investigation into the Omp85 protein BamK in hypervirulent Klebsiella pneumoniae, and its role in outer membrane biogenesis.

Torres VVL, Heinz E, Stubenrauch CJ, Wilksch JJ, Cao H, Yang J, Clements A, Dunstan RA, Alcock F, Webb CT, Dougan G, Strugnell RA, Hay ID, Lithgow T.

Mol Microbiol. 2018 Sep;109(5):584-599. doi: 10.1111/mmi.13990. Epub 2018 Sep 19.


The WD40 Protein BamB Mediates Coupling of BAM Complexes into Assembly Precincts in the Bacterial Outer Membrane.

Gunasinghe SD, Shiota T, Stubenrauch CJ, Schulze KE, Webb CT, Fulcher AJ, Dunstan RA, Hay ID, Naderer T, Whelan DR, Bell TDM, Elgass KD, Strugnell RA, Lithgow T.

Cell Rep. 2018 May 29;23(9):2782-2794. doi: 10.1016/j.celrep.2018.04.093.


Need for speed: An optimized gridding approach for spatially explicit disease simulations.

Sellman S, Tsao K, Tildesley MJ, Brommesson P, Webb CT, Wennergren U, Keeling MJ, Lindström T.

PLoS Comput Biol. 2018 Apr 6;14(4):e1006086. doi: 10.1371/journal.pcbi.1006086. eCollection 2018 Apr.


Model-guided suggestions for targeted surveillance based on cattle shipments in the U.S.

Gorsich EE, McKee CD, Grear DA, Miller RS, Portacci K, Lindström T, Webb CT.

Prev Vet Med. 2018 Feb 1;150:52-59. doi: 10.1016/j.prevetmed.2017.12.004. Epub 2017 Dec 6.


Kinetic Parameters of trans Scission by Extended HDV-like Ribozymes and the Prospect for the Discovery of Genomic trans-Cleaving RNAs.

Webb CT, Lupták A.

Biochemistry. 2018 Mar 6;57(9):1440-1450. doi: 10.1021/acs.biochem.7b00789. Epub 2018 Feb 13.


Reductive evolution in outer membrane protein biogenesis has not compromised cell surface complexity in Helicobacter pylori.

Webb CT, Chandrapala D, Oslan SN, Bamert RS, Grinter RD, Dunstan RA, Gorrell RJ, Song J, Strugnell RA, Lithgow T, Kwok T.

Microbiologyopen. 2017 Dec;6(6). doi: 10.1002/mbo3.513. Epub 2017 Oct 21.


Structural basis for substrate selection by the translocation and assembly module of the β-barrel assembly machinery.

Bamert RS, Lundquist K, Hwang H, Webb CT, Shiota T, Stubenrauch CJ, Belousoff MJ, Goode RJA, Schittenhelm RB, Zimmerman R, Jung M, Gumbart JC, Lithgow T.

Mol Microbiol. 2017 Oct;106(1):142-156. doi: 10.1111/mmi.13757. Epub 2017 Aug 9.


Super-Resolution Imaging of Protein Secretion Systems and the Cell Surface of Gram-Negative Bacteria.

Gunasinghe SD, Webb CT, Elgass KD, Hay ID, Lithgow T.

Front Cell Infect Microbiol. 2017 May 29;7:220. doi: 10.3389/fcimb.2017.00220. eCollection 2017. Review.


Impact of body condition on influenza A virus infection dynamics in mallards following a secondary exposure.

Dannemiller NG, Webb CT, Wilson KR, Bentler KT, Mooers NL, Ellis JW, Root JJ, Franklin AB, Shriner SA.

PLoS One. 2017 Apr 19;12(4):e0175757. doi: 10.1371/journal.pone.0175757. eCollection 2017.


Ensemble modelling and structured decision-making to support Emergency Disease Management.

Webb CT, Ferrari M, Lindström T, Carpenter T, Dürr S, Garner G, Jewell C, Stevenson M, Ward MP, Werkman M, Backer J, Tildesley M.

Prev Vet Med. 2017 Mar 1;138:124-133. doi: 10.1016/j.prevetmed.2017.01.003. Epub 2017 Jan 16.


Inferring infection hazard in wildlife populations by linking data across individual and population scales.

Pepin KM, Kay SL, Golas BD, Shriner SS, Gilbert AT, Miller RS, Graham AL, Riley S, Cross PC, Samuel MD, Hooten MB, Hoeting JA, Lloyd-Smith JO, Webb CT, Buhnerkempe MG.

Ecol Lett. 2017 Mar;20(3):275-292. doi: 10.1111/ele.12732. Epub 2017 Jan 16.


Mapping U.S. cattle shipment networks: Spatial and temporal patterns of trade communities from 2009 to 2011.

Gorsich EE, Luis AD, Buhnerkempe MG, Grear DA, Portacci K, Miller RS, Webb CT.

Prev Vet Med. 2016 Nov 1;134:82-91. doi: 10.1016/j.prevetmed.2016.09.023. Epub 2016 Oct 3.


A Unified Framework for the Infection Dynamics of Zoonotic Spillover and Spread.

Lo Iacono G, Cunningham AA, Fichet-Calvet E, Garry RF, Grant DS, Leach M, Moses LM, Nichols G, Schieffelin JS, Shaffer JG, Webb CT, Wood JL.

PLoS Negl Trop Dis. 2016 Sep 2;10(9):e0004957. doi: 10.1371/journal.pntd.0004957. eCollection 2016 Sep.


Phylogenetic and geographic patterns of bartonella host shifts among bat species.

McKee CD, Hayman DTS, Kosoy MY, Webb CT.

Infect Genet Evol. 2016 Oct;44:382-394. doi: 10.1016/j.meegid.2016.07.033. Epub 2016 Jul 27.


Identification of migratory bird flyways in North America using community detection on biological networks.

Buhnerkempe MG, Webb CT, Merton AA, Buhnerkempe JE, Givens GH, Miller RS, Hoeting JA.

Ecol Appl. 2016 Apr;26(3):740-51.


Decision-making for foot-and-mouth disease control: Objectives matter.

Probert WJ, Shea K, Fonnesbeck CJ, Runge MC, Carpenter TE, Dürr S, Garner MG, Harvey N, Stevenson MA, Webb CT, Werkman M, Tildesley MJ, Ferrari MJ.

Epidemics. 2016 Jun;15:10-9. doi: 10.1016/j.epidem.2015.11.002. Epub 2015 Dec 10.


Invasion of two tick-borne diseases across New England: harnessing human surveillance data to capture underlying ecological invasion processes.

Walter KS, Pepin KM, Webb CT, Gaff HD, Krause PJ, Pitzer VE, Diuk-Wasser MA.

Proc Biol Sci. 2016 Jun 15;283(1832). pii: 20160834. doi: 10.1098/rspb.2016.0834.


Environment, host, and fungal traits predict continental-scale white-nose syndrome in bats.

Hayman DT, Pulliam JR, Marshall JC, Cryan PM, Webb CT.

Sci Adv. 2016 Jan 29;2(1):e1500831. doi: 10.1126/sciadv.1500831. eCollection 2016 Jan.


When environmentally persistent pathogens transform good habitat into ecological traps.

Leach CB, Webb CT, Cross PC.

R Soc Open Sci. 2016 Mar 23;3(3):160051. doi: 10.1098/rsos.160051. eCollection 2016 Mar.


Identification of BamC on the Surface of E. coli.

Webb CT, Lithgow T.

Methods Mol Biol. 2015;1329:215-25. doi: 10.1007/978-1-4939-2871-2_17.


Network analysis of host-virus communities in bats and rodents reveals determinants of cross-species transmission.

Luis AD, O'Shea TJ, Hayman DTS, Wood JLN, Cunningham AA, Gilbert AT, Mills JN, Webb CT.

Ecol Lett. 2015 Nov;18(11):1153-1162. doi: 10.1111/ele.12491. Epub 2015 Aug 24.


Nowhere to Go but Up: Impacts of Climate Change on Demographics of a Short-Range Endemic (Crotalus willardi obscurus) in the Sky-Islands of Southwestern North America.

Davis MA, Douglas MR, Webb CT, Collyer ML, Holycross AT, Painter CW, Kamees LK, Douglas ME.

PLoS One. 2015 Jun 26;10(6):e0131067. doi: 10.1371/journal.pone.0131067. eCollection 2015.


Utility of mosquito surveillance data for spatial prioritization of vector control against dengue viruses in three Brazilian cities.

Pepin KM, Leach CB, Marques-Toledo C, Laass KH, Paixao KS, Luis AD, Hayman DT, Johnson NG, Buhnerkempe MG, Carver S, Grear DA, Tsao K, Eiras AE, Webb CT.

Parasit Vectors. 2015 Feb 15;8:98. doi: 10.1186/s13071-015-0659-y.


Using modelling to disentangle the relative contributions of zoonotic and anthroponotic transmission: the case of lassa fever.

Lo Iacono G, Cunningham AA, Fichet-Calvet E, Garry RF, Grant DS, Khan SH, Leach M, Moses LM, Schieffelin JS, Shaffer JG, Webb CT, Wood JL.

PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3398. doi: 10.1371/journal.pntd.0003398. eCollection 2015 Jan.


Overcoming Allee effects through evolutionary, genetic, and demographic rescue.

Kanarek AR, Webb CT, Barfield M, Holt RD.

J Biol Dyn. 2015;9:15-33. doi: 10.1080/17513758.2014.978399.


Reconstitution of a nanomachine driving the assembly of proteins into bacterial outer membranes.

Shen HH, Leyton DL, Shiota T, Belousoff MJ, Noinaj N, Lu J, Holt SA, Tan K, Selkrig J, Webb CT, Buchanan SK, Martin LL, Lithgow T.

Nat Commun. 2014 Oct 24;5:5078. doi: 10.1038/ncomms6078.


The effect of seasonal birth pulses on pathogen persistence in wild mammal populations.

Peel AJ, Pulliam JR, Luis AD, Plowright RK, O'Shea TJ, Hayman DT, Wood JL, Webb CT, Restif O.

Proc Biol Sci. 2014 Jul 7;281(1786). pii: 20132962. doi: 10.1098/rspb.2013.2962.


Local cattle movements in response to ongoing bovine tuberculosis zonation and regulations in Michigan, USA.

Grear DA, Kaneene JB, Averill JJ, Webb CT.

Prev Vet Med. 2014 Jun 1;114(3-4):201-12. doi: 10.1016/j.prevetmed.2014.03.008. Epub 2014 Mar 18.


The impact of movements and animal density on continental scale cattle disease outbreaks in the United States.

Buhnerkempe MG, Tildesley MJ, Lindström T, Grear DA, Portacci K, Miller RS, Lombard JE, Werkman M, Keeling MJ, Wennergren U, Webb CT.

PLoS One. 2014 Mar 26;9(3):e91724. doi: 10.1371/journal.pone.0091724. eCollection 2014.


Using quantitative disease dynamics as a tool for guiding response to avian influenza in poultry in the United States of America.

Pepin KM, Spackman E, Brown JD, Pabilonia KL, Garber LP, Weaver JT, Kennedy DA, Patyk KA, Huyvaert KP, Miller RS, Franklin AB, Pedersen K, Bogich TL, Rohani P, Shriner SA, Webb CT, Riley S.

Prev Vet Med. 2014 Mar 1;113(4):376-97. doi: 10.1016/j.prevetmed.2013.11.011. Epub 2013 Dec 1. Review.


Minimizing the threat of pandemic emergence from avian influenza in poultry systems.

Pepin KM, Lloyd-Smith JO, Webb CT, Holcomb K, Zhu H, Guan Y, Riley S.

BMC Infect Dis. 2013 Dec 16;13:592. doi: 10.1186/1471-2334-13-592.


Transcriptional activation of the mrkA promoter of the Klebsiella pneumoniae type 3 fimbrial operon by the c-di-GMP-dependent MrkH protein.

Yang J, Wilksch JJ, Tan JW, Hocking DM, Webb CT, Lithgow T, Robins-Browne RM, Strugnell RA.

PLoS One. 2013 Nov 14;8(11):e79038. doi: 10.1371/journal.pone.0079038. eCollection 2013.


Assembly of β-barrel proteins into bacterial outer membranes.

Selkrig J, Leyton DL, Webb CT, Lithgow T.

Biochim Biophys Acta. 2014 Aug;1843(8):1542-50. doi: 10.1016/j.bbamcr.2013.10.009. Epub 2013 Oct 14. Review.


A national-scale picture of U.S. cattle movements obtained from Interstate Certificate of Veterinary Inspection data.

Buhnerkempe MG, Grear DA, Portacci K, Miller RS, Lombard JE, Webb CT.

Prev Vet Med. 2013 Nov 1;112(3-4):318-29. doi: 10.1016/j.prevetmed.2013.08.002. Epub 2013 Aug 16.


Persistence of black-tailed prairie-dog populations affected by plague in northern Colorado, USA.

George DB, Webb CT, Pepin KM, Savage LT, Antolini MF.

Ecology. 2013 Jul;94(7):1572-83.


Anticipating the prevalence of avian influenza subtypes H9 and H5 in live-bird markets.

Pepin KM, Wang J, Webb CT, Hoeting JA, Poss M, Hudson PJ, Hong W, Zhu H, Guan Y, Riley S.

PLoS One. 2013;8(2):e56157. doi: 10.1371/journal.pone.0056157. Epub 2013 Feb 7.


A comparison of bats and rodents as reservoirs of zoonotic viruses: are bats special?

Luis AD, Hayman DT, O'Shea TJ, Cryan PM, Gilbert AT, Pulliam JR, Mills JN, Timonin ME, Willis CK, Cunningham AA, Fooks AR, Rupprecht CE, Wood JL, Webb CT.

Proc Biol Sci. 2013 Feb 1;280(1756):20122753. doi: 10.1098/rspb.2012.2753. Print 2013 Apr 7.


A bayesian approach for modeling cattle movements in the United States: scaling up a partially observed network.

Lindström T, Grear DA, Buhnerkempe M, Webb CT, Miller RS, Portacci K, Wennergren U.

PLoS One. 2013;8(1):e53432. doi: 10.1371/journal.pone.0053432. Epub 2013 Jan 4.


Evolution of the β-barrel assembly machinery.

Webb CT, Heinz E, Lithgow T.

Trends Microbiol. 2012 Dec;20(12):612-20. doi: 10.1016/j.tim.2012.08.006. Epub 2012 Sep 6. Review.


Ecology of zoonotic infectious diseases in bats: current knowledge and future directions.

Hayman DT, Bowen RA, Cryan PM, McCracken GF, O'Shea TJ, Peel AJ, Gilbert A, Webb CT, Wood JL.

Zoonoses Public Health. 2013 Feb;60(1):2-21. doi: 10.1111/zph.12000. Epub 2012 Sep 7. Review.


Quantification of heterosubtypic immunity between avian influenza subtypes H3N8 and H4N6 in multiple avian host species.

Pepin KM, VanDalen KK, Mooers NL, Ellis JW, Sullivan HJ, Root JJ, Webb CT, Franklin AB, Shriner SA.

J Gen Virol. 2012 Dec;93(Pt 12):2575-83. doi: 10.1099/vir.0.045427-0. Epub 2012 Sep 5.


A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T.

PLoS One. 2012;7(8):e43245. doi: 10.1371/journal.pone.0043245. Epub 2012 Aug 14.

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