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Items: 28

1.

Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia.

Dean GH, Asmarayani R, Ardiyani M, Santika Y, Triono T, Mathews S, Webb CO.

Appl Plant Sci. 2018 Jul 13;6(7):e01167. doi: 10.1002/aps3.1167. eCollection 2018 Jun. Review.

2.

Phylogenetic classification of the world's tropical forests.

Slik JWF, Franklin J, Arroyo-Rodríguez V, Field R, Aguilar S, Aguirre N, Ahumada J, Aiba SI, Alves LF, K A, Avella A, Mora F, Aymard C GA, Báez S, Balvanera P, Bastian ML, Bastin JF, Bellingham PJ, van den Berg E, da Conceição Bispo P, Boeckx P, Boehning-Gaese K, Bongers F, Boyle B, Brambach F, Brearley FQ, Brown S, Chai SL, Chazdon RL, Chen S, Chhang P, Chuyong G, Ewango C, Coronado IM, Cristóbal-Azkarate J, Culmsee H, Damas K, Dattaraja HS, Davidar P, DeWalt SJ, Din H, Drake DR, Duque A, Durigan G, Eichhorn K, Eler ES, Enoki T, Ensslin A, Fandohan AB, Farwig N, Feeley KJ, Fischer M, Forshed O, Garcia QS, Garkoti SC, Gillespie TW, Gillet JF, Gonmadje C, Granzow-de la Cerda I, Griffith DM, Grogan J, Hakeem KR, Harris DJ, Harrison RD, Hector A, Hemp A, Homeier J, Hussain MS, Ibarra-Manríquez G, Hanum IF, Imai N, Jansen PA, Joly CA, Joseph S, Kartawinata K, Kearsley E, Kelly DL, Kessler M, Killeen TJ, Kooyman RM, Laumonier Y, Laurance SG, Laurance WF, Lawes MJ, Letcher SG, Lindsell J, Lovett J, Lozada J, Lu X, Lykke AM, Mahmud KB, Mahayani NPD, Mansor A, Marshall AR, Martin EH, Calderado Leal Matos D, Meave JA, Melo FPL, Mendoza ZHA, Metali F, Medjibe VP, Metzger JP, Metzker T, Mohandass D, Munguía-Rosas MA, Muñoz R, Nurtjahy E, de Oliveira EL, Onrizal, Parolin P, Parren M, Parthasarathy N, Paudel E, Perez R, Pérez-García EA, Pommer U, Poorter L, Qie L, Piedade MTF, Pinto JRR, Poulsen AD, Poulsen JR, Powers JS, Prasad RC, Puyravaud JP, Rangel O, Reitsma J, Rocha DSB, Rolim S, Rovero F, Rozak A, Ruokolainen K, Rutishauser E, Rutten G, Mohd Said MN, Saiter FZ, Saner P, Santos B, Dos Santos JR, Sarker SK, Schmitt CB, Schoengart J, Schulze M, Sheil D, Sist P, Souza AF, Spironello WR, Sposito T, Steinmetz R, Stevart T, Suganuma MS, Sukri R, Sultana A, Sukumar R, Sunderland T, Supriyadi, Suresh HS, Suzuki E, Tabarelli M, Tang J, Tanner EVJ, Targhetta N, Theilade I, Thomas D, Timberlake J, de Morisson Valeriano M, van Valkenburg J, Van Do T, Van Sam H, Vandermeer JH, Verbeeck H, Vetaas OR, Adekunle V, Vieira SA, Webb CO, Webb EL, Whitfeld T, Wich S, Williams J, Wiser S, Wittmann F, Yang X, Adou Yao CY, Yap SL, Zahawi RA, Zakaria R, Zang R.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1837-1842. doi: 10.1073/pnas.1714977115. Epub 2018 Feb 5. Erratum in: Proc Natl Acad Sci U S A. 2018 Mar 12;:.

3.

An estimate of the number of tropical tree species.

Slik JW, Arroyo-Rodríguez V, Aiba S, Alvarez-Loayza P, Alves LF, Ashton P, Balvanera P, Bastian ML, Bellingham PJ, van den Berg E, Bernacci L, da Conceição Bispo P, Blanc L, Böhning-Gaese K, Boeckx P, Bongers F, Boyle B, Bradford M, Brearley FQ, Breuer-Ndoundou Hockemba M, Bunyavejchewin S, Calderado Leal Matos D, Castillo-Santiago M, Catharino EL, Chai SL, Chen Y, Colwell RK, Chazdon RL, Clark C, Clark DB, Clark DA, Culmsee H, Damas K, Dattaraja HS, Dauby G, Davidar P, DeWalt SJ, Doucet JL, Duque A, Durigan G, Eichhorn KA, Eisenlohr PV, Eler E, Ewango C, Farwig N, Feeley KJ, Ferreira L, Field R, de Oliveira Filho AT, Fletcher C, Forshed O, Franco G, Fredriksson G, Gillespie T, Gillet JF, Amarnath G, Griffith DM, Grogan J, Gunatilleke N, Harris D, Harrison R, Hector A, Homeier J, Imai N, Itoh A, Jansen PA, Joly CA, de Jong BH, Kartawinata K, Kearsley E, Kelly DL, Kenfack D, Kessler M, Kitayama K, Kooyman R, Larney E, Laumonier Y, Laurance S, Laurance WF, Lawes MJ, Amaral IL, Letcher SG, Lindsell J, Lu X, Mansor A, Marjokorpi A, Martin EH, Meilby H, Melo FP, Metcalfe DJ, Medjibe VP, Metzger JP, Millet J, Mohandass D, Montero JC, de Morisson Valeriano M, Mugerwa B, Nagamasu H, Nilus R, Ochoa-Gaona S, Onrizal, Page N, Parolin P, Parren M, Parthasarathy N, Paudel E, Permana A, Piedade MT, Pitman NC, Poorter L, Poulsen AD, Poulsen J, Powers J, Prasad RC, Puyravaud JP, Razafimahaimodison JC, Reitsma J, Dos Santos JR, Roberto Spironello W, Romero-Saltos H, Rovero F, Rozak AH, Ruokolainen K, Rutishauser E, Saiter F, Saner P, Santos BA, Santos F, Sarker SK, Satdichanh M, Schmitt CB, Schöngart J, Schulze M, Suganuma MS, Sheil D, da Silva Pinheiro E, Sist P, Stevart T, Sukumar R, Sun IF, Sunderland T, Suresh HS, Suzuki E, Tabarelli M, Tang J, Targhetta N, Theilade I, Thomas DW, Tchouto P, Hurtado J, Valencia R, van Valkenburg JL, Van Do T, Vasquez R, Verbeeck H, Adekunle V, Vieira SA, Webb CO, Whitfeld T, Wich SA, Williams J, Wittmann F, Wöll H, Yang X, Adou Yao CY, Yap SL, Yoneda T, Zahawi RA, Zakaria R, Zang R, de Assis RL, Garcia Luize B, Venticinque EM.

Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):7472-7. doi: 10.1073/pnas.1423147112. Epub 2015 Jun 1. Erratum in: Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):E4628-9. Robin, Chazdon L [corrected to Chazdon, Robin L]; Sunderand, Terry [corrected to Sunderland, Terry].

4.

Biodiversity only makes sense in the light of evolution.

Geeta R, Lohmann LG, Magallon S, Faith DP, Hendry A, Crandall K, De Meester L, Webb CO, Prieur-Richard AH, Mimura M, Conti E, Cracraft J, Forest F, Jaramillo C, Donoghue M, Yahara T.

J Biosci. 2014 Jun;39(3):333-7. No abstract available.

PMID:
24845496
5.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G.

BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158.

6.

Evolutionary tools for phytosanitary risk analysis: phylogenetic signal as a predictor of host range of plant pests and pathogens.

Gilbert GS, Magarey R, Suiter K, Webb CO.

Evol Appl. 2012 Dec;5(8):869-78. doi: 10.1111/j.1752-4571.2012.00265.x. Epub 2012 May 3.

7.

Plant DNA barcodes, taxonomic management, and species discovery in tropical forests.

Dick CW, Webb CO.

Methods Mol Biol. 2012;858:379-93. doi: 10.1007/978-1-61779-591-6_18.

PMID:
22684966
8.

Soils on exposed Sunda shelf shaped biogeographic patterns in the equatorial forests of Southeast Asia.

Slik JW, Aiba S, Bastian M, Brearley FQ, Cannon CH, Eichhorn KA, Fredriksson G, Kartawinata K, Laumonier Y, Mansor A, Marjokorpi A, Meijaard E, Morley RJ, Nagamasu H, Nilus R, Nurtjahya E, Payne J, Permana A, Poulsen AD, Raes N, Riswan S, van Schaik CP, Sheil D, Sidiyasa K, Suzuki E, van Valkenburg JL, Webb CO, Wich S, Yoneda T, Zakaria R, Zweifel N.

Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12343-7. doi: 10.1073/pnas.1103353108. Epub 2011 Jul 11.

9.

Picante: R tools for integrating phylogenies and ecology.

Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Blomberg SP, Webb CO.

Bioinformatics. 2010 Jun 1;26(11):1463-4. doi: 10.1093/bioinformatics/btq166. Epub 2010 Apr 15.

PMID:
20395285
10.

Patterns and causes of species richness: a general simulation model for macroecology.

Gotelli NJ, Anderson MJ, Arita HT, Chao A, Colwell RK, Connolly SR, Currie DJ, Dunn RR, Graves GR, Green JL, Grytnes JA, Jiang YH, Jetz W, Kathleen Lyons S, McCain CM, Magurran AE, Rahbek C, Rangel TF, Soberón J, Webb CO, Willig MR.

Ecol Lett. 2009 Sep;12(9):873-86. doi: 10.1111/j.1461-0248.2009.01353.x.

PMID:
19702748
11.

Emerging patterns in the comparative analysis of phylogenetic community structure.

Vamosi SM, Heard SB, Vamosi JC, Webb CO.

Mol Ecol. 2009 Feb;18(4):572-92. doi: 10.1111/j.1365-294X.2008.04001.x. Epub 2008 Nov 24. Review.

PMID:
19037898
12.

Are functional traits good predictors of demographic rates? Evidence from five neotropical forests.

Poorter L, Wright SJ, Paz H, Ackerly DD, Condit R, Ibarra-Manríquez G, Harms KE, Licona JC, Martínez-Ramos M, Mazer SJ, Muller-Landau HC, Peña-Claros M, Webb CO, Wright IJ.

Ecology. 2008 Jul;89(7):1908-20.

PMID:
18705377
13.

Phylocom: software for the analysis of phylogenetic community structure and trait evolution.

Webb CO, Ackerly DD, Kembel SW.

Bioinformatics. 2008 Sep 15;24(18):2098-100. doi: 10.1093/bioinformatics/btn358. Epub 2008 Aug 4.

PMID:
18678590
14.

Trait evolution, community assembly, and the phylogenetic structure of ecological communities.

Kraft NJ, Cornwell WK, Webb CO, Ackerly DD.

Am Nat. 2007 Aug;170(2):271-83. Epub 2007 Jun 5.

PMID:
17874377
15.

Phylogenetic signal in plant pathogen-host range.

Gilbert GS, Webb CO.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4979-83. Epub 2007 Mar 14.

16.

Regional and phylogenetic variation of wood density across 2456 Neotropical tree species.

Chave J, Muller-Landau HC, Baker TR, Easdale TA, ter Steege H, Webb CO.

Ecol Appl. 2006 Dec;16(6):2356-67.

PMID:
17205910
17.

Phylodiversity-dependent seedling mortality, size structure, and disease in a Bornean rain forest.

Webb CO, Gilbert GS, Donoghue MJ.

Ecology. 2006 Jul;87(7 Suppl):S123-31.

PMID:
16922308
18.

Phylogenetic dispersion of host use in a tropical insect herbivore community.

Weiblen GD, Webb CO, Novotny V, Basset Y, Miller SE.

Ecology. 2006 Jul;87(7 Suppl):S62-75.

PMID:
16922303
19.

Niche evolution and adaptive radiation: testing the order of trait divergence.

Ackerly DD, Schwilk DW, Webb CO.

Ecology. 2006 Jul;87(7 Suppl):S50-61.

PMID:
16922302
20.

Relationships among ecologically important dimensions of plant trait variation in seven neotropical forests.

Wright IJ, Ackerly DD, Bongers F, Harms KE, Ibarra-Manriquez G, Martinez-Ramos M, Mazer SJ, Muller-Landau HC, Paz H, Pitman NC, Poorter L, Silman MR, Vriesendorp CF, Webb CO, Westoby M, Wright SJ.

Ann Bot. 2007 May;99(5):1003-15. Epub 2006 Apr 4.

21.

Exotic taxa less related to native species are more invasive.

Strauss SY, Webb CO, Salamin N.

Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5841-5. Epub 2006 Mar 31.

22.

A likelihood framework for inferring the evolution of geographic range on phylogenetic trees.

Ree RH, Moore BR, Webb CO, Donoghue MJ.

Evolution. 2005 Nov;59(11):2299-311.

PMID:
16396171
23.

Factors that shape seed mass evolution.

Moles AT, Ackerly DD, Webb CO, Tweddle JC, Dickie JB, Pitman AJ, Westoby M.

Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10540-4. Epub 2005 Jul 19.

24.

Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests.

Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ.

Am Nat. 2005 Mar;165(3):E36-65. Epub 2005 Feb 1.

PMID:
15729659
25.

A brief history of seed size.

Moles AT, Ackerly DD, Webb CO, Tweddle JC, Dickie JB, Westoby M.

Science. 2005 Jan 28;307(5709):576-80.

26.

Phylogenetic balance and ecological evenness.

Webb CO, Pitman NC.

Syst Biol. 2002 Dec;51(6):898-907.

PMID:
12554456
27.

Ecology. Sizing up the shape of life.

Zens MS, Webb CO.

Science. 2002 Feb 22;295(5559):1475-6. No abstract available.

PMID:
11859181
28.

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees.

Webb CO.

Am Nat. 2000 Aug;156(2):145-155. doi: 10.1086/303378.

PMID:
10856198

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