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Items: 27

1.

Autism spectrum disorder: insights into convergent mechanisms from transcriptomics.

Quesnel-Vallières M, Weatheritt RJ, Cordes SP, Blencowe BJ.

Nat Rev Genet. 2019 Jan;20(1):51-63. doi: 10.1038/s41576-018-0066-2. Review.

PMID:
30390048
2.

Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop.

Sterne-Weiler T, Weatheritt RJ, Best AJ, Ha KCH, Blencowe BJ.

Mol Cell. 2018 Oct 4;72(1):187-200.e6. doi: 10.1016/j.molcel.2018.08.018. Epub 2018 Sep 13.

PMID:
30220560
3.

Regulatory Expansion in Mammals of Multivalent hnRNP Assemblies that Globally Control Alternative Splicing.

Gueroussov S, Weatheritt RJ, O'Hanlon D, Lin ZY, Narula A, Gingras AC, Blencowe BJ.

Cell. 2017 Jul 13;170(2):324-339.e23. doi: 10.1016/j.cell.2017.06.037.

4.

Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors.

Han H, Braunschweig U, Gonatopoulos-Pournatzis T, Weatheritt RJ, Hirsch CL, Ha KCH, Radovani E, Nabeel-Shah S, Sterne-Weiler T, Wang J, O'Hanlon D, Pan Q, Ray D, Zheng H, Vizeacoumar F, Datti A, Magomedova L, Cummins CL, Hughes TR, Greenblatt JF, Wrana JL, Moffat J, Blencowe BJ.

Mol Cell. 2017 Feb 2;65(3):539-553.e7. doi: 10.1016/j.molcel.2017.01.011.

5.

The ribosome-engaged landscape of alternative splicing.

Weatheritt RJ, Sterne-Weiler T, Blencowe BJ.

Nat Struct Mol Biol. 2016 Dec;23(12):1117-1123. doi: 10.1038/nsmb.3317. Epub 2016 Nov 7.

6.

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer.

Latysheva NS, Oates ME, Maddox L, Flock T, Gough J, Buljan M, Weatheritt RJ, Babu MM.

Mol Cell. 2016 Aug 18;63(4):579-592. doi: 10.1016/j.molcel.2016.07.008.

7.

An extensive program of periodic alternative splicing linked to cell cycle progression.

Dominguez D, Tsai YH, Weatheritt R, Wang Y, Blencowe BJ, Wang Z.

Elife. 2016 Mar 25;5. pii: e10288. doi: 10.7554/eLife.10288.

8.

How do disordered regions achieve comparable functions to structured domains?

Latysheva NS, Flock T, Weatheritt RJ, Chavali S, Babu MM.

Protein Sci. 2015 Jun;24(6):909-22. doi: 10.1002/pro.2674. Epub 2015 May 15. Review.

9.

A highly conserved program of neuronal microexons is misregulated in autistic brains.

Irimia M, Weatheritt RJ, Ellis JD, Parikshak NN, Gonatopoulos-Pournatzis T, Babor M, Quesnel-Vallières M, Tapial J, Raj B, O'Hanlon D, Barrios-Rodiles M, Sternberg MJ, Cordes SP, Roth FP, Wrana JL, Geschwind DH, Blencowe BJ.

Cell. 2014 Dec 18;159(7):1511-23. doi: 10.1016/j.cell.2014.11.035.

10.

Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems.

Weatheritt RJ, Gibson TJ, Babu MM.

Nat Struct Mol Biol. 2014 Sep;21(9):833-9. doi: 10.1038/nsmb.2876. Epub 2014 Aug 24.

11.

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ.

Mol Biosyst. 2014 Oct;10(10):2626-42. doi: 10.1039/c4mb00290c.

12.

Controlling entropy to tune the functions of intrinsically disordered regions.

Flock T, Weatheritt RJ, Latysheva NS, Babu MM.

Curr Opin Struct Biol. 2014 Jun;26:62-72. doi: 10.1016/j.sbi.2014.05.007. Epub 2014 Jun 12. Review.

PMID:
24930020
13.

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE.

Chem Rev. 2014 Jul 9;114(13):6733-78. doi: 10.1021/cr400585q. Epub 2014 Jun 13. Review. No abstract available.

PMID:
24926813
14.

Classification of intrinsically disordered regions and proteins.

van der Lee R, Buljan M, Lang B, Weatheritt RJ, Daughdrill GW, Dunker AK, Fuxreiter M, Gough J, Gsponer J, Jones DT, Kim PM, Kriwacki RW, Oldfield CJ, Pappu RV, Tompa P, Uversky VN, Wright PE, Babu MM.

Chem Rev. 2014 Jul 9;114(13):6589-631. doi: 10.1021/cr400525m. Epub 2014 Apr 29. Review. No abstract available.

15.

Evolution. The hidden codes that shape protein evolution.

Weatheritt RJ, Babu MM.

Science. 2013 Dec 13;342(6164):1325-6. doi: 10.1126/science.1248425. No abstract available.

16.

The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.

17.

Drift and conservation of differential exon usage across tissues in primate species.

Reyes A, Anders S, Weatheritt RJ, Gibson TJ, Steinmetz LM, Huber W.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15377-82. doi: 10.1073/pnas.1307202110. Epub 2013 Sep 3.

18.

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces.

Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE.

Sci Signal. 2013 Apr 2;6(269):rs7. doi: 10.1126/scisignal.2003345.

PMID:
23550212
19.

Linear motifs: lost in (pre)translation.

Weatheritt RJ, Gibson TJ.

Trends Biochem Sci. 2012 Aug;37(8):333-41. doi: 10.1016/j.tibs.2012.05.001. Epub 2012 Jun 15. Review.

PMID:
22705166
20.

Linear motifs confer functional diversity onto splice variants.

Weatheritt RJ, Davey NE, Gibson TJ.

Nucleic Acids Res. 2012 Aug;40(15):7123-31. doi: 10.1093/nar/gks442. Epub 2012 May 25.

21.

iELM--a web server to explore short linear motif-mediated interactions.

Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W364-9. doi: 10.1093/nar/gks444. Epub 2012 May 25.

22.

The identification of short linear motif-mediated interfaces within the human interactome.

Weatheritt RJ, Luck K, Petsalaki E, Davey NE, Gibson TJ.

Bioinformatics. 2012 Apr 1;28(7):976-82. doi: 10.1093/bioinformatics/bts072. Epub 2012 Feb 10.

23.

ELM--the database of eukaryotic linear motifs.

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21.

24.

Attributes of short linear motifs.

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ.

Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12.

PMID:
21909575
25.

ELM: the status of the 2010 eukaryotic linear motif resource.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17.

26.

[Not Available].

Yanashima R, Kitagawa N, Matsubara Y, Weatheritt R, Oka K, Kikuchi S, Tomita M, Ishizaki S.

Front Neuroinform. 2009 May 29;3:13. eCollection 2009.

27.

Executive control of spatial attention shifts in the auditory compared to the visual modality.

Krumbholz K, Nobis EA, Weatheritt RJ, Fink GR.

Hum Brain Mapp. 2009 May;30(5):1457-69. doi: 10.1002/hbm.20615.

PMID:
18649349

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