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Items: 28

1.

Mediator function in plant metabolism revealed by large-scale biology.

Mao X, Weake VM, Chapple C.

J Exp Bot. 2019 Aug 21. pii: erz372. doi: 10.1093/jxb/erz372. [Epub ahead of print]

PMID:
31504746
2.

Mutation of Mediator subunit CDK8 counteracts the stunted growth and salicylic acid hyperaccumulation phenotypes of an Arabidopsis MED5 mutant.

Mao X, Kim JI, Wheeler MT, Heintzelman AK, Weake VM, Chapple C.

New Phytol. 2019 Jul;223(1):233-245. doi: 10.1111/nph.15741. Epub 2019 Mar 18.

PMID:
30756399
3.

The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability.

Torres-Zelada EF, Stephenson RE, Alpsoy A, Anderson BD, Swanson SK, Florens L, Dykhuizen EC, Washburn MP, Weake VM.

J Cell Sci. 2019 Jan 16;132(2). pii: jcs214072. doi: 10.1242/jcs.214072.

4.

Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors.

Hall H, Ma J, Shekhar S, Leon-Salas WD, Weake VM.

BMC Neurosci. 2018 Jul 20;19(1):43. doi: 10.1186/s12868-018-0443-y.

5.

Proper splicing contributes to visual function in the aging Drosophila eye.

Stegeman R, Hall H, Escobedo SE, Chang HC, Weake VM.

Aging Cell. 2018 Oct;17(5):e12817. doi: 10.1111/acel.12817. Epub 2018 Jul 12.

6.

A Novel Sterol-Signaling Pathway Governs Azole Antifungal Drug Resistance and Hypoxic Gene Repression in Saccharomyces cerevisiae.

Serratore ND, Baker KM, Macadlo LA, Gress AR, Powers BL, Atallah N, Westerhouse KM, Hall MC, Weake VM, Briggs SD.

Genetics. 2018 Mar;208(3):1037-1055. doi: 10.1534/genetics.117.300554. Epub 2017 Dec 20.

7.

A Programmable Optical Stimulator for the Drosophila Eye.

Chen X, Leon-Salas WD, Zigon T, Ready DF, Weake VM.

HardwareX. 2017 Oct;2:13-33. doi: 10.1016/j.ohx.2017.07.001. Epub 2017 Jul 10.

8.

Cytochrome b5 protects photoreceptors from light stress-induced lipid peroxidation and retinal degeneration.

Chen X, Hall H, Simpson JP, Leon-Salas WD, Ready DF, Weake VM.

NPJ Aging Mech Dis. 2017 Dec 4;3:18. doi: 10.1038/s41514-017-0019-6. eCollection 2017.

9.

Transcriptome profiling of aging Drosophila photoreceptors reveals gene expression trends that correlate with visual senescence.

Hall H, Medina P, Cooper DA, Escobedo SE, Rounds J, Brennan KJ, Vincent C, Miura P, Doerge R, Weake VM.

BMC Genomics. 2017 Nov 21;18(1):894. doi: 10.1186/s12864-017-4304-3.

10.

An automated workflow for quantifying RNA transcripts in individual cells in large data-sets.

Pharris MC, Wu TC, Chen X, Wang X, Umulis DM, Weake VM, Kinzer-Ursem TL.

MethodsX. 2017 Sep 1;4:279-288. doi: 10.1016/j.mex.2017.08.002. eCollection 2017.

11.

Transcriptional Signatures of Aging.

Stegeman R, Weake VM.

J Mol Biol. 2017 Aug 4;429(16):2427-2437. doi: 10.1016/j.jmb.2017.06.019. Epub 2017 Jul 3. Review.

12.

Myeloid Leukemia Factor Acts in a Chaperone Complex to Regulate Transcription Factor Stability and Gene Expression.

Dyer JO, Dutta A, Gogol M, Weake VM, Dialynas G, Wu X, Seidel C, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL.

J Mol Biol. 2017 Jun 30;429(13):2093-2107. doi: 10.1016/j.jmb.2016.10.026. Epub 2016 Oct 27.

13.
14.

The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing.

Stegeman R, Spreacker PJ, Swanson SK, Stephenson R, Florens L, Washburn MP, Weake VM.

J Mol Biol. 2016 Sep 11;428(18):3632-49. doi: 10.1016/j.jmb.2016.05.009. Epub 2016 May 13.

15.

Characterization of a Drosophila ortholog of the Cdc7 kinase: a role for Cdc7 in endoreplication independent of Chiffon.

Stephenson R, Hosler MR, Gavande NS, Ghosh AK, Weake VM.

J Biol Chem. 2015 Jan 16;290(3):1332-47. doi: 10.1074/jbc.M114.597948. Epub 2014 Dec 1.

16.
17.

Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration.

Mohan RD, Dialynas G, Weake VM, Liu J, Martin-Brown S, Florens L, Washburn MP, Workman JL, Abmayr SM.

Genes Dev. 2014 Feb 1;28(3):259-72. doi: 10.1101/gad.225151.113.

18.

SAGA function in tissue-specific gene expression.

Weake VM, Workman JL.

Trends Cell Biol. 2012 Apr;22(4):177-84. doi: 10.1016/j.tcb.2011.11.005. Epub 2011 Dec 21.

19.

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.

Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2011 Jul 15;25(14):1499-509. doi: 10.1101/gad.2046211.

20.

Sex-biased transcription enhancement by a 5' tethered Gal4-MOF histone acetyltransferase fusion protein in Drosophila.

Schiemann AH, Li F, Weake VM, Belikoff EJ, Klemmer KC, Moore SA, Scott MJ.

BMC Mol Biol. 2010 Nov 9;11:80. doi: 10.1186/1471-2199-11-80.

21.

The importance of location and orientation of male specific lethal complex binding sites of differing affinities on reporter gene dosage compensation in Drosophila.

Schiemann AH, Weake VM, Li F, Laverty C, Belikoff EJ, Scott MJ.

Biochem Biophys Res Commun. 2010 Nov 26;402(4):699-704. doi: 10.1016/j.bbrc.2010.10.088. Epub 2010 Oct 25.

PMID:
20977887
22.

Inducible gene expression: diverse regulatory mechanisms.

Weake VM, Workman JL.

Nat Rev Genet. 2010 Jun;11(6):426-37. doi: 10.1038/nrg2781. Epub 2010 Apr 27. Review.

PMID:
20421872
23.

A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.

Weake VM, Swanson SK, Mushegian A, Florens L, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2009 Dec 15;23(24):2818-23. doi: 10.1101/gad.1846409.

24.

Hit and run: X marks the spot!

Weake VM, Workman JL.

Nat Struct Mol Biol. 2009 Aug;16(8):801-3. doi: 10.1038/nsmb0809-801. No abstract available.

PMID:
19654616
25.

Clearing the way for unpaused polymerases.

Weake VM, Workman JL.

Cell. 2008 Jul 11;134(1):16-8. doi: 10.1016/j.cell.2008.06.031.

26.

Histone ubiquitination: triggering gene activity.

Weake VM, Workman JL.

Mol Cell. 2008 Mar 28;29(6):653-63. doi: 10.1016/j.molcel.2008.02.014. Review.

27.

SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system.

Weake VM, Lee KK, Guelman S, Lin CH, Seidel C, Abmayr SM, Workman JL.

EMBO J. 2008 Jan 23;27(2):394-405. doi: 10.1038/sj.emboj.7601966. Epub 2008 Jan 10.

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