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Items: 1 to 50 of 164

1.

Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa.

Hendricks SA, Schweizer RM, Harrigan RJ, Pollinger JP, Paquet PC, Darimont CT, Adams JR, Waits LP, vonHoldt BM, Hohenlohe PA, Wayne RK.

Heredity (Edinb). 2018 Jun 7. doi: 10.1038/s41437-018-0094-x. [Epub ahead of print]

PMID:
29880893
2.

Widespread, long-term admixture between grey wolves and domestic dogs across Eurasia and its implications for the conservation status of hybrids.

Pilot M, Greco C, vonHoldt BM, Randi E, Jędrzejewski W, Sidorovich VE, Konopiński MK, Ostrander EA, Wayne RK.

Evol Appl. 2018 Mar 8;11(5):662-680. doi: 10.1111/eva.12595. eCollection 2018 Jun.

3.

Transcriptomic analysis of skin pigmentation variation in the Virginia opossum (Didelphis virginiana).

Nigenda-Morales SF, Hu Y, Beasley JC, Ruiz-Piña HA, Valenzuela-Galván D, Wayne RK.

Mol Ecol. 2018 Jun;27(12):2680-2697. doi: 10.1111/mec.14712. Epub 2018 Jun 4.

PMID:
29742302
4.

Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves.

Schweizer RM, Durvasula A, Smith J, Vohr SH, Stahler DR, Galaverni M, Thalmann O, Smith DW, Randi E, Ostrander EA, Green RE, Lohmueller KE, Novembre J, Wayne RK.

Mol Biol Evol. 2018 May 1;35(5):1190-1209. doi: 10.1093/molbev/msy031.

PMID:
29688543
5.

Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial.

Nigenda-Morales SF, Harrigan RJ, Wayne RK.

PeerJ. 2018 Mar 27;6:e4512. doi: 10.7717/peerj.4512. eCollection 2018.

6.

Urbanization and anticoagulant poisons promote immune dysfunction in bobcats.

Serieys LEK, Lea AJ, Epeldegui M, Armenta TC, Moriarty J, VandeWoude S, Carver S, Foley J, Wayne RK, Riley SPD, Uittenbogaart CH.

Proc Biol Sci. 2018 Jan 31;285(1871). pii: 20172533. doi: 10.1098/rspb.2017.2533.

PMID:
29343604
7.

Demographic history, selection and functional diversity of the canine genome.

Ostrander EA, Wayne RK, Freedman AH, Davis BW.

Nat Rev Genet. 2017 Dec;18(12):705-720. doi: 10.1038/nrg.2017.67. Epub 2017 Sep 25. Review.

PMID:
28944780
8.

EPAS1 variants in high altitude Tibetan wolves were selectively introgressed into highland dogs.

vonHoldt B, Fan Z, Ortega-Del Vecchyo D, Wayne RK.

PeerJ. 2017 Jul 12;5:e3522. doi: 10.7717/peerj.3522. eCollection 2017.

9.

Determining the drivers of population structure in a highly urbanized landscape to inform conservation planning.

Thomassen HA, Harrigan RJ, Semple Delaney K, Riley SPD, Serieys LEK, Pease K, Wayne RK, Smith TB.

Conserv Biol. 2018 Feb;32(1):148-158. doi: 10.1111/cobi.12969. Epub 2017 Oct 30.

PMID:
28631859
10.

Response to Hohenlohe et al.

vonHoldt BM, Cahill JA, Gronau I, Shapiro B, Wall J, Wayne RK.

Sci Adv. 2017 Jun 7;3(6):e1701233. doi: 10.1126/sciadv.1701233. eCollection 2017 Jun.

11.

Deciphering the Origin of Dogs: From Fossils to Genomes.

Freedman AH, Wayne RK.

Annu Rev Anim Biosci. 2017 Feb 8;5:281-307. doi: 10.1146/annurev-animal-022114-110937. Epub 2016 Nov 28. Review.

PMID:
27912242
12.

Seasonal gene expression in a migratory songbird.

Johnston RA, Paxton KL, Moore FR, Wayne RK, Smith TB.

Mol Ecol. 2016 Nov;25(22):5680-5691. doi: 10.1111/mec.13879. Epub 2016 Nov 1.

PMID:
27747949
13.

Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae).

Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, Eizirik E.

Genet Mol Biol. 2016 Jul-Sep;39(3):442-51. doi: 10.1590/1678-4685-GMB-2015-0189. Epub 2016 Jul 25.

14.

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf.

vonHoldt BM, Cahill JA, Fan Z, Gronau I, Robinson J, Pollinger JP, Shapiro B, Wall J, Wayne RK.

Sci Adv. 2016 Jul 27;2(7):e1501714. doi: 10.1126/sciadv.1501714. eCollection 2016 Jul.

15.

Pervasive Effects of Aging on Gene Expression in Wild Wolves.

Charruau P, Johnston RA, Stahler DR, Lea A, Snyder-Mackler N, Smith DW, vonHoldt BM, Cole SW, Tung J, Wayne RK.

Mol Biol Evol. 2016 Aug;33(8):1967-78. doi: 10.1093/molbev/msw072. Epub 2016 Apr 15.

16.

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves.

Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM.

Mol Ecol. 2016 Apr;25(8):1838-55. doi: 10.1111/mec.13480. Epub 2016 Jan 18.

17.

Genomic Flatlining in the Endangered Island Fox.

Robinson JA, Ortega-Del Vecchyo D, Fan Z, Kim BY, vonHoldt BM, Marsden CD, Lohmueller KE, Wayne RK.

Curr Biol. 2016 May 9;26(9):1183-9. doi: 10.1016/j.cub.2016.02.062. Epub 2016 Apr 21.

18.

Admixture mapping identifies introgressed genomic regions in North American canids.

vonHoldt BM, Kays R, Pollinger JP, Wayne RK.

Mol Ecol. 2016 Jun;25(11):2443-53. doi: 10.1111/mec.13667. Epub 2016 May 12.

PMID:
27106273
19.

Hybridization and endangered species protection in the molecular era.

Wayne RK, Shaffer HB.

Mol Ecol. 2016 Jun;25(11):2680-9. doi: 10.1111/mec.13642. Epub 2016 May 11.

PMID:
27064931
20.

Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J.

PLoS Genet. 2016 Mar 4;12(3):e1005851. doi: 10.1371/journal.pgen.1005851. eCollection 2016 Mar.

21.

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs.

Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, Vilà C, Marques-Bonet T, Schnabel RD, Wayne RK, Lohmueller KE.

Proc Natl Acad Sci U S A. 2016 Jan 5;113(1):152-7. doi: 10.1073/pnas.1512501113. Epub 2015 Dec 22.

22.

Worldwide patterns of genomic variation and admixture in gray wolves.

Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilà C, Marques-Bonet T, Godinho R, Yue B, Wayne RK.

Genome Res. 2016 Feb;26(2):163-73. doi: 10.1101/gr.197517.115. Epub 2015 Dec 17.

23.

Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves.

Schweizer RM, Robinson J, Harrigan R, Silva P, Galverni M, Musiani M, Green RE, Novembre J, Wayne RK.

Mol Ecol. 2016 Jan;25(1):357-79. doi: 10.1111/mec.13467. Epub 2015 Dec 24.

PMID:
26562361
24.

Genetic subdivision and candidate genes under selection in North American grey wolves.

Schweizer RM, vonHoldt BM, Harrigan R, Knowles JC, Musiani M, Coltman D, Novembre J, Wayne RK.

Mol Ecol. 2016 Jan;25(1):380-402. doi: 10.1111/mec.13364. Epub 2015 Nov 5.

PMID:
26333947
25.

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.

Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK.

Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30.

26.

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor.

Decker B, Davis BW, Rimbault M, Long AH, Karlins E, Jagannathan V, Reiman R, Parker HG, Drögemüller C, Corneveaux JJ, Chapman ES, Trent JM, Leeb T, Huentelman MJ, Wayne RK, Karyadi DM, Ostrander EA.

Genome Res. 2015 Nov;25(11):1646-55. doi: 10.1101/gr.190314.115. Epub 2015 Jul 31.

27.

Mexican Wolves Are a Valid Subspecies and an Appropriate Conservation Target.

Fredrickson RJ, Hedrick PW, Wayne RK, vonHoldt BM, Phillips MK.

J Hered. 2015 Jul-Aug;106(4):415-6. doi: 10.1093/jhered/esv028. Epub 2015 May 11. No abstract available.

PMID:
25964445
28.

Anticoagulant rodenticides in urban bobcats: exposure, risk factors and potential effects based on a 16-year study.

Serieys LE, Armenta TC, Moriarty JG, Boydston EE, Lyren LM, Poppenga RH, Crooks KR, Wayne RK, Riley SP.

Ecotoxicology. 2015 May;24(4):844-62. doi: 10.1007/s10646-015-1429-5. Epub 2015 Feb 25.

PMID:
25707484
29.

Kinship, parental manipulation and evolutionary origins of eusociality.

Kapheim KM, Nonacs P, Smith AR, Wayne RK, Wcislo WT.

Proc Biol Sci. 2015 Mar 22;282(1803):20142886. doi: 10.1098/rspb.2014.2886.

30.

Disease and freeways drive genetic change in urban bobcat populations.

Serieys LE, Lea A, Pollinger JP, Riley SP, Wayne RK.

Evol Appl. 2015 Jan;8(1):75-92. doi: 10.1111/eva.12226. Epub 2014 Dec 2.

31.

Individual behaviors dominate the dynamics of an urban mountain lion population isolated by roads.

Riley SP, Serieys LE, Pollinger JP, Sikich JA, Dalbeck L, Wayne RK, Ernest HB.

Curr Biol. 2014 Sep 8;24(17):1989-94. doi: 10.1016/j.cub.2014.07.029. Epub 2014 Aug 14.

32.

Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau.

Zhang W, Fan Z, Han E, Hou R, Zhang L, Galaverni M, Huang J, Liu H, Silva P, Li P, Pollinger JP, Du L, Zhang X, Yue B, Wayne RK, Zhang Z.

PLoS Genet. 2014 Jul 31;10(7):e1004466. doi: 10.1371/journal.pgen.1004466. eCollection 2014 Jul.

33.

Analysis of structural diversity in wolf-like canids reveals post-domestication variants.

Ramirez O, Olalde I, Berglund J, Lorente-Galdos B, Hernandez-Rodriguez J, Quilez J, Webster MT, Wayne RK, Lalueza-Fox C, Vilà C, Marques-Bonet T.

BMC Genomics. 2014 Jun 12;15:465. doi: 10.1186/1471-2164-15-465.

34.

Genome sequencing highlights the dynamic early history of dogs.

Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Wilton A, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Ostrander EA, Marques-Bonet T, Wayne RK, Novembre J.

PLoS Genet. 2014 Jan;10(1):e1004016. doi: 10.1371/journal.pgen.1004016. Epub 2014 Jan 16. Erratum in: PLoS Genet. 2014 Aug;10(8):e1004631. Wilton, Alan [added].

35.

Renewed diversification is associated with new ecological opportunity in the Neotropical turtle ants.

Price SL, Powell S, Kronauer DJ, Tran LA, Pierce NE, Wayne RK.

J Evol Biol. 2014 Feb;27(2):242-58. doi: 10.1111/jeb.12300. Epub 2014 Jan 13.

36.

Genome-wide signatures of population bottlenecks and diversifying selection in European wolves.

Pilot M, Greco C, vonHoldt BM, Jędrzejewska B, Randi E, Jędrzejewski W, Sidorovich VE, Ostrander EA, Wayne RK.

Heredity (Edinb). 2014 Apr;112(4):428-42. doi: 10.1038/hdy.2013.122. Epub 2013 Dec 18.

37.

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.

Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, Schmitz RW, Worthington B, Buikstra JE, Druzhkova A, Graphodatsky AS, Ovodov ND, Wahlberg N, Freedman AH, Schweizer RM, Koepfli KP, Leonard JA, Meyer M, Krause J, Pääbo S, Green RE, Wayne RK.

Science. 2013 Nov 15;342(6160):871-4. doi: 10.1126/science.1243650.

38.

Derived variants at six genes explain nearly half of size reduction in dog breeds.

Rimbault M, Beale HC, Schoenebeck JJ, Hoopes BC, Allen JJ, Kilroy-Glynn P, Wayne RK, Sutter NB, Ostrander EA.

Genome Res. 2013 Dec;23(12):1985-95. doi: 10.1101/gr.157339.113. Epub 2013 Sep 11.

39.

Divergent responses of exposed and naive Pacific tree frog tadpoles to invasive predatory crayfish.

Pease KM, Wayne RK.

Oecologia. 2014 Jan;174(1):241-52. doi: 10.1007/s00442-013-2745-1. Epub 2013 Sep 4.

PMID:
24002711
40.

Artificial selection on brain-expressed genes during the domestication of dog.

Li Y, Vonholdt BM, Reynolds A, Boyko AR, Wayne RK, Wu DD, Zhang YP.

Mol Biol Evol. 2013 Aug;30(8):1867-76. doi: 10.1093/molbev/mst088. Epub 2013 May 8.

PMID:
23660689
41.

Intraspecific morphological and genetic variation of common species predicts ranges of threatened ones.

Fuller TL, Thomassen HA, Peralvo M, Buermann W, Milá B, Kieswetter CM, Jarrín-V P, Devitt SE, Mason E, Schweizer RM, Schlunegger J, Chan J, Wang O, Schneider CJ, Pollinger JP, Saatchi S, Graham CH, Wayne RK, Smith TB.

Proc Biol Sci. 2013 Apr 17;280(1760):20130423. doi: 10.1098/rspb.2013.0423. Print 2013 Jun 7. Erratum in: Proc Biol Sci. 2013 Jul 22;280(1763):20131237.

42.

A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit.

Karyadi DM, Karlins E, Decker B, vonHoldt BM, Carpintero-Ramirez G, Parker HG, Wayne RK, Ostrander EA.

PLoS Genet. 2013 Mar;9(3):e1003409. doi: 10.1371/journal.pgen.1003409. Epub 2013 Mar 28.

43.

Ancient DNA analysis affirms the canid from Altai as a primitive dog.

Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK.

PLoS One. 2013;8(3):e57754. doi: 10.1371/journal.pone.0057754. Epub 2013 Mar 6.

44.

Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping.

vonHoldt BM, Pollinger JP, Earl DA, Parker HG, Ostrander EA, Wayne RK.

Mamm Genome. 2013 Feb;24(1-2):80-8. doi: 10.1007/s00335-012-9432-0. Epub 2012 Oct 12.

PMID:
23064780
45.

The adaptive value of morphological, behavioural and life-history traits in reproductive female wolves.

Stahler DR, MacNulty DR, Wayne RK, vonHoldt B, Smith DW.

J Anim Ecol. 2013 Jan;82(1):222-34. doi: 10.1111/j.1365-2656.2012.02039.x. Epub 2012 Oct 8.

PMID:
23043440
46.

Variation of BMP3 contributes to dog breed skull diversity.

Schoenebeck JJ, Hutchinson SA, Byers A, Beale HC, Carrington B, Faden DL, Rimbault M, Decker B, Kidd JM, Sood R, Boyko AR, Fondon JW 3rd, Wayne RK, Bustamante CD, Ciruna B, Ostrander EA.

PLoS Genet. 2012;8(8):e1002849. doi: 10.1371/journal.pgen.1002849. Epub 2012 Aug 2.

47.

Efficient recovery of whole blood RNA--a comparison of commercial RNA extraction protocols for high-throughput applications in wildlife species.

Schwochow D, Serieys LE, Wayne RK, Thalmann O.

BMC Biotechnol. 2012 Jun 27;12:33. doi: 10.1186/1472-6750-12-33.

48.

Pattern of extinction of the woolly mammoth in Beringia.

MacDonald GM, Beilman DW, Kuzmin YV, Orlova LA, Kremenetski KV, Shapiro B, Wayne RK, Van Valkenburgh B.

Nat Commun. 2012 Jun 12;3:893. doi: 10.1038/ncomms1881.

49.

Impact of Quaternary climatic changes and interspecific competition on the demographic history of a highly mobile generalist carnivore, the coyote.

Koblmüller S, Wayne RK, Leonard JA.

Biol Lett. 2012 Aug 23;8(4):644-7. doi: 10.1098/rsbl.2012.0162. Epub 2012 Apr 4.

50.

Spatial and temporal patterns of neutral and adaptive genetic variation in the endangered African wild dog (Lycaon pictus).

Marsden CD, Woodroffe R, Mills MG, McNutt JW, Creel S, Groom R, Emmanuel M, Cleaveland S, Kat P, Rasmussen GS, Ginsberg J, Lines R, André JM, Begg C, Wayne RK, Mable BK.

Mol Ecol. 2012 Mar;21(6):1379-93. doi: 10.1111/j.1365-294X.2012.05477.x. Epub 2012 Feb 9. Erratum in: Mol Ecol. 2012 Sep;21(17):4408.

PMID:
22320891

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