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Items: 28

1.

Metabolomic Fingerprints of Individual Algal Cells Using the Single-Probe Mass Spectrometry Technique.

Sun M, Yang Z, Wawrik B.

Front Plant Sci. 2018 Apr 30;9:571. doi: 10.3389/fpls.2018.00571. eCollection 2018.

2.

Different Bacterial Communities Involved in Peptide Decomposition between Normoxic and Hypoxic Coastal Waters.

Liu S, Wawrik B, Liu Z.

Front Microbiol. 2017 Mar 7;8:353. doi: 10.3389/fmicb.2017.00353. eCollection 2017.

3.

Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion.

Bonifay V, Wawrik B, Sunner J, Snodgrass EC, Aydin E, Duncan KE, Callaghan AV, Oldham A, Liengen T, Beech I.

Front Microbiol. 2017 Jan 31;8:99. doi: 10.3389/fmicb.2017.00099. eCollection 2017.

4.

Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion.

Cooper JT, Sinclair GA, Wawrik B.

Front Microbiol. 2016 May 9;7:639. doi: 10.3389/fmicb.2016.00639. eCollection 2016.

5.

Methanogenic paraffin degradation proceeds via alkane addition to fumarate by 'Smithella' spp. mediated by a syntrophic coupling with hydrogenotrophic methanogens.

Wawrik B, Marks CR, Davidova IA, McInerney MJ, Pruitt S, Duncan KE, Suflita JM, Callaghan AV.

Environ Microbiol. 2016 Sep;18(8):2604-19. doi: 10.1111/1462-2920.13374. Epub 2016 Jun 27.

PMID:
27198766
6.

Transcriptional response of Desulfatibacillum alkenivorans AK-01 to growth on alkanes: insights from RT-qPCR and microarray analyses.

Herath A, Wawrik B, Qin Y, Zhou J, Callaghan AV.

FEMS Microbiol Ecol. 2016 May;92(5):fiw062. doi: 10.1093/femsec/fiw062. Epub 2016 Mar 23.

PMID:
27009900
7.

Dethiosulfatarculus sandiegensis gen. nov., sp. nov., isolated from a methanogenic paraffin-degrading enrichment culture and emended description of the family Desulfarculaceae.

Davidova IA, Wawrik B, Callaghan AV, Duncan K, Marks CR, Suflita JM.

Int J Syst Evol Microbiol. 2016 Mar;66(3):1242-1248. doi: 10.1099/ijsem.0.000864. Epub 2015 Dec 23.

PMID:
26704417
8.

Interrogation of Chesapeake Bay sediment microbial communities for intrinsic alkane-utilizing potential under anaerobic conditions.

Johnson JM, Wawrik B, Isom C, Boling WB, Callaghan AV.

FEMS Microbiol Ecol. 2015 Feb;91(2):1-14. doi: 10.1093/femsec/fiu035. Epub 2014 Dec 24.

9.

Urea uptake and carbon fixation by marine pelagic bacteria and archaea during the Arctic summer and winter seasons.

Connelly TL, Baer SE, Cooper JT, Bronk DA, Wawrik B.

Appl Environ Microbiol. 2014 Oct;80(19):6013-22. doi: 10.1128/AEM.01431-14. Epub 2014 Jul 25.

10.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

11.

A microarray for assessing transcription from pelagic marine microbial taxa.

Shilova IN, Robidart JC, James Tripp H, Turk-Kubo K, Wawrik B, Post AF, Thompson AW, Ward B, Hollibaugh JT, Millard A, Ostrowski M, Scanlan DJ, Paerl RW, Stuart R, Zehr JP.

ISME J. 2014 Jul;8(7):1476-91. doi: 10.1038/ismej.2014.1. Epub 2014 Jan 30.

12.

Genome Sequence of Youngiibacter fragilis, the Type Strain of the Genus Youngiibacter.

Wawrik CB, Callaghan AV, Stamps BW, Wawrik B.

Genome Announc. 2014 Jan 23;2(1). pii: e01183-13. doi: 10.1128/genomeA.01183-13.

13.

Youngiibacter fragilis gen. nov., sp. nov., isolated from natural gas production-water and reclassification of Acetivibrio multivorans as Youngiibacter multivorans comb. nov.

Lawson PA, Wawrik B, Allen TD, Johnson CN, Marks CR, Tanner RS, Harriman BH, Strąpoc D, Callaghan AV.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):198-205. doi: 10.1099/ijs.0.053728-0. Epub 2013 Sep 18.

PMID:
24048874
14.

Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin.

Wawrik B, Mendivelso M, Parisi VA, Suflita JM, Davidova IA, Marks CR, Van Nostrand JD, Liang Y, Zhou J, Huizinga BJ, Strąpoć D, Callaghan AV.

FEMS Microbiol Ecol. 2012 Jul;81(1):26-42. doi: 10.1111/j.1574-6941.2011.01272.x. Epub 2012 Jan 11.

15.

Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis.

Wawrik B, Boling WB, Van Nostrand JD, Xie J, Zhou J, Bronk DA.

FEMS Microbiol Ecol. 2012 Feb;79(2):400-11. doi: 10.1111/j.1574-6941.2011.01226.x. Epub 2011 Nov 9.

16.

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation.

Callaghan AV, Morris BE, Pereira IA, McInerney MJ, Austin RN, Groves JT, Kukor JJ, Suflita JM, Young LY, Zylstra GJ, Wawrik B.

Environ Microbiol. 2012 Jan;14(1):101-13. doi: 10.1111/j.1462-2920.2011.02516.x. Epub 2011 Jun 8.

PMID:
21651686
17.

Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures.

Callaghan AV, Davidova IA, Savage-Ashlock K, Parisi VA, Gieg LM, Suflita JM, Kukor JJ, Wawrik B.

Environ Sci Technol. 2010 Oct 1;44(19):7287-94. doi: 10.1021/es1002023.

PMID:
20504044
18.

Functional prokaryotic RubisCO from an oceanic metagenomic library.

Witte B, John D, Wawrik B, Paul JH, Dayan D, Tabita FR.

Appl Environ Microbiol. 2010 May;76(9):2997-3003. doi: 10.1128/AEM.02661-09. Epub 2010 Mar 12.

19.

Rapid, colorimetric quantification of lipid from algal cultures.

Wawrik B, Harriman BH.

J Microbiol Methods. 2010 Mar;80(3):262-6. doi: 10.1016/j.mimet.2010.01.016. Epub 2010 Jan 20.

PMID:
20093146
20.

Use of inorganic and organic nitrogen by Synechococcus spp. and diatoms on the west Florida shelf as measured using stable isotope probing.

Wawrik B, Callaghan AV, Bronk DA.

Appl Environ Microbiol. 2009 Nov;75(21):6662-70. doi: 10.1128/AEM.01002-09. Epub 2009 Sep 4.

21.

Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes.

Callaghan AV, Wawrik B, Ní Chadhain SM, Young LY, Zylstra GJ.

Biochem Biophys Res Commun. 2008 Feb 1;366(1):142-8. Epub 2007 Nov 29.

PMID:
18053803
22.

Rapid screening of a large insert BAC library for specific 16S rRNA genes using TRFLP.

Babcock DA, Wawrik B, Paul JH, McGuinness L, Kerkhof LJ.

J Microbiol Methods. 2007 Nov;71(2):156-61. Epub 2007 Aug 19.

PMID:
17888534
23.

Biogeography of actinomycete communities and type II polyketide synthase genes in soils collected in New Jersey and Central Asia.

Wawrik B, Kutliev D, Abdivasievna UA, Kukor JJ, Zylstra GJ, Kerkhof L.

Appl Environ Microbiol. 2007 May;73(9):2982-9. Epub 2007 Mar 2.

24.

Effect of different carbon sources on community composition of bacterial enrichments from soil.

Wawrik B, Kerkhof L, Kukor J, Zylstra G.

Appl Environ Microbiol. 2005 Nov;71(11):6776-83.

25.

Identification of unique type II polyketide synthase genes in soil.

Wawrik B, Kerkhof L, Zylstra GJ, Kukor JJ.

Appl Environ Microbiol. 2005 May;71(5):2232-8.

26.

Geochemical rate-RNA integration study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs.

Corredor JE, Wawrik B, Paul JH, Tran H, Kerkhof L, López JM, Dieppa A, Cárdenas O.

Appl Environ Microbiol. 2004 Sep;70(9):5459-68.

27.

Molecular detection and quantitation of the red tide dinoflagellate Karenia brevis in the marine environment.

Gray M, Wawrik B, Paul J, Casper E.

Appl Environ Microbiol. 2003 Sep;69(9):5726-30.

28.

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