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A Modular Tray Growth System for Barley.

Arrieta M, Colas I, Macaulay M, Waugh R, Ramsay L.

Methods Mol Biol. 2020;2061:367-379. doi: 10.1007/978-1-4939-9818-0_26.


Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy.

Darrier B, Arrieta M, Mittmann SU, Sourdille P, Ramsay L, Waugh R, Colas I.

Methods Mol Biol. 2020;2061:207-215. doi: 10.1007/978-1-4939-9818-0_15.


A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing.

Schreiber M, Barakate A, Uzrek N, Macaulay M, Sourdille A, Morris J, Hedley PE, Ramsay L, Waugh R.

Plant Methods. 2019 Aug 24;15:99. doi: 10.1186/s13007-019-0486-9. eCollection 2019.


Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley.

Bustos-Korts D, Dawson IK, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi EL, Molnar-Lang M, Ozkan H, Megyeri M, Miko P, Çakır E, Yakışır E, Trabanco N, Delbono S, Kyriakidis S, Booth A, Cammarano D, Mascher M, Werner P, Cattivelli L, Rossini L, Stein N, Kilian B, Waugh R, van Eeuwijk FA.

Plant J. 2019 Sep;99(6):1172-1191. doi: 10.1111/tpj.14414. Epub 2019 Jun 27.


A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources.

Darrier B, Russell J, Milner SG, Hedley PE, Shaw PD, Macaulay M, Ramsay LD, Halpin C, Mascher M, Fleury DL, Langridge P, Stein N, Waugh R.

Front Plant Sci. 2019 Apr 26;10:544. doi: 10.3389/fpls.2019.00544. eCollection 2019.


APETALA2 control of barley internode elongation.

Patil V, McDermott HI, McAllister T, Cummins M, Silva JC, Mollison E, Meikle R, Morris J, Hedley PE, Waugh R, Dockter C, Hansson M, McKim SM.

Development. 2019 Jun 12;146(11). pii: dev170373. doi: 10.1242/dev.170373.


Tracing the ancestry of modern bread wheats.

Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, Dyer S, Letellier T, Alaux M; Wheat and Barley Legacy for Breeding Improvement (WHEALBI) consortium, Russell J, Keller B, van Eeuwijk F, Spannagl M, Mayer KFX, Waugh R, Stein N, Cattivelli L, Haberer G, Charmet G, Salse J.

Nat Genet. 2019 May;51(5):905-911. doi: 10.1038/s41588-019-0393-z. Epub 2019 May 1.


desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 in barley.

Colas I, Barakate A, Macaulay M, Schreiber M, Stephens J, Vivera S, Halpin C, Waugh R, Ramsay L.

J Exp Bot. 2019 May 9;70(10):2683-2698. doi: 10.1093/jxb/erz080.


Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers.

Lewandowska D, Zhang R, Colas I, Uzrek N, Waugh R.

Front Plant Sci. 2019 Apr 2;10:393. doi: 10.3389/fpls.2019.00393. eCollection 2019.


Harnessing the potential of germplasm collections.

Langridge P, Waugh R.

Nat Genet. 2019 Feb;51(2):200-201. doi: 10.1038/s41588-018-0340-4. No abstract available.


Ultrathin Dual-Scale Nano- and Microporous Membranes for Vascular Transmigration Models.

Salminen AT, Zhang J, Madejski GR, Khire TS, Waugh RE, McGrath JL, Gaborski TR.

Small. 2019 Feb;15(6):e1804111. doi: 10.1002/smll.201804111. Epub 2019 Jan 11.


Characterisation of barley resistance to rhynchosporium on chromosome 6HS.

Coulter M, Büttner B, Hofmann K, Bayer M, Ramsay L, Schweizer G, Waugh R, Looseley ME, Avrova A.

Theor Appl Genet. 2019 Apr;132(4):1089-1107. doi: 10.1007/s00122-018-3262-8. Epub 2018 Dec 13.


Genetic dissection of quantitative and qualitative traits using a minimum set of barley Recombinant Chromosome Substitution Lines.

De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R.

BMC Plant Biol. 2018 Dec 7;18(1):340. doi: 10.1186/s12870-018-1527-7.


Exome Capture for Variant Discovery and Analysis in Barley.

Bayer M, Morris JA, Booth C, Booth A, Uzrek N, Russell JR, Waugh R, Hedley PE.

Methods Mol Biol. 2019;1900:283-310. doi: 10.1007/978-1-4939-8944-7_18.


High-Resolution RT-PCR Analysis of Alternative Barley Transcripts.

Simpson CG, Fuller J, Rapazote-Flores P, Mayer CD, Calixto CPG, Milne L, Hedley PE, Booth C, Waugh R, Brown JWS.

Methods Mol Biol. 2019;1900:269-281. doi: 10.1007/978-1-4939-8944-7_17.


Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy.

Mittmann S, Arrieta M, Ramsay L, Waugh R, Colas I.

Methods Mol Biol. 2019;1900:167-179. doi: 10.1007/978-1-4939-8944-7_11.


Interaction between row-type genes in barley controls meristem determinacy and reveals novel routes to improved grain.

Zwirek M, Waugh R, McKim SM.

New Phytol. 2019 Mar;221(4):1950-1965. doi: 10.1111/nph.15548. Epub 2018 Nov 27.


Resistance to Rhynchosporium commune in a collection of European spring barley germplasm.

Looseley ME, Griffe LL, Büttner B, Wright KM, Middlefell-Williams J, Bull H, Shaw PD, Macaulay M, Booth A, Schweizer G, Russell JR, Waugh R, Thomas WTB, Avrova A.

Theor Appl Genet. 2018 Dec;131(12):2513-2528. doi: 10.1007/s00122-018-3168-5. Epub 2018 Aug 27.


RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C.

Plant Biotechnol J. 2019 Mar;17(3):594-607. doi: 10.1111/pbi.13001. Epub 2018 Oct 2.


Mixed methods evaluation of a quality improvement and audit tool for nurse-to-nurse bedside clinical handover in ward settings.

Redley B, Waugh R.

Appl Nurs Res. 2018 Apr;40:80-89. doi: 10.1016/j.apnr.2017.12.013. Epub 2017 Dec 18.


Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach.

Canto CF, Kalogiros DI, Ptashnyk M, George TS, Waugh R, Bengough AG, Russell J, Dupuy LX.

J Theor Biol. 2018 Jun 14;447:84-97. doi: 10.1016/j.jtbi.2018.03.020. Epub 2018 Mar 17.


ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley.

Okagaki RJ, Haaning A, Bilgic H, Heinen S, Druka A, Bayer M, Waugh R, Muehlbauer GJ.

Plant Physiol. 2018 Apr;176(4):2750-2760. doi: 10.1104/pp.17.01459. Epub 2018 Feb 12.


Finite element modeling to analyze TEER values across silicon nanomembranes.

Khire TS, Nehilla BJ, Getpreecharsawas J, Gracheva ME, Waugh RE, McGrath JL.

Biomed Microdevices. 2018 Jan 5;20(1):11. doi: 10.1007/s10544-017-0251-7.


The repetitive landscape of the 5100 Mbp barley genome.

Wicker T, Schulman AH, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer NM, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer KFX, Gundlach H.

Mob DNA. 2017 Dec 20;8:22. doi: 10.1186/s13100-017-0102-3. eCollection 2017.


The pseudogenes of barley.

Prade VM, Gundlach H, Twardziok S, Chapman B, Tan C, Langridge P, Schulman AH, Stein N, Waugh R, Zhang G, Platzer M, Li C, Spannagl M, Mayer KFX.

Plant J. 2018 Feb;93(3):502-514. doi: 10.1111/tpj.13794. Epub 2018 Jan 7.


Extreme Suppression of Lateral Floret Development by a Single Amino Acid Change in the VRS1 Transcription Factor.

Sakuma S, Lundqvist U, Kakei Y, Thirulogachandar V, Suzuki T, Hori K, Wu J, Tagiri A, Rutten T, Koppolu R, Shimada Y, Houston K, Thomas WTB, Waugh R, Schnurbusch T, Komatsuda T.

Plant Physiol. 2017 Dec;175(4):1720-1731. doi: 10.1104/pp.17.01149. Epub 2017 Nov 3.


Development and Evaluation of a Barley 50k iSelect SNP Array.

Bayer MM, Rapazote-Flores P, Ganal M, Hedley PE, Macaulay M, Plieske J, Ramsay L, Russell J, Shaw PD, Thomas W, Waugh R.

Front Plant Sci. 2017 Oct 17;8:1792. doi: 10.3389/fpls.2017.01792. eCollection 2017.


Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility.

Bull H, Casao MC, Zwirek M, Flavell AJ, Thomas WTB, Guo W, Zhang R, Rapazote-Flores P, Kyriakidis S, Russell J, Druka A, McKim SM, Waugh R.

Nat Commun. 2017 Oct 16;8(1):936. doi: 10.1038/s41467-017-00940-7.


Levels of Intra-specific AFLP Diversity in Tuber-Bearing Potato Species with Different Breeding Systems and Ploidy Levels.

Bryan GJ, McLean K, Waugh R, Spooner DM.

Front Genet. 2017 Sep 21;8:119. doi: 10.3389/fgene.2017.00119. eCollection 2017.


A Genome Wide Association Study of arabinoxylan content in 2-row spring barley grain.

Hassan AS, Houston K, Lahnstein J, Shirley N, Schwerdt JG, Gidley MJ, Waugh R, Little A, Burton RA.

PLoS One. 2017 Aug 3;12(8):e0182537. doi: 10.1371/journal.pone.0182537. eCollection 2017.


Observation of Extensive Chromosome Axis Remodeling during the "Diffuse-Phase" of Meiosis in Large Genome Cereals.

Colas I, Darrier B, Arrieta M, Mittmann SU, Ramsay L, Sourdille P, Waugh R.

Front Plant Sci. 2017 Jul 13;8:1235. doi: 10.3389/fpls.2017.01235. eCollection 2017.


Circulating primitive erythroblasts establish a functional, protein 4.1R-dependent cytoskeletal network prior to enucleating.

Huang YS, Delgadillo LF, Cyr KH, Kingsley PD, An X, McGrath KE, Mohandas N, Conboy JG, Waugh RE, Wan J, Palis J.

Sci Rep. 2017 Jul 12;7(1):5164. doi: 10.1038/s41598-017-05498-4.


Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size.

Guo W, Calixto CPG, Tzioutziou N, Lin P, Waugh R, Brown JWS, Zhang R.

BMC Syst Biol. 2017 Jun 19;11(1):62. doi: 10.1186/s12918-017-0440-2.


Reducing Stomatal Density in Barley Improves Drought Tolerance without Impacting on Yield.

Hughes J, Hepworth C, Dutton C, Dunn JA, Hunt L, Stephens J, Waugh R, Cameron DD, Gray JE.

Plant Physiol. 2017 Jun;174(2):776-787. doi: 10.1104/pp.16.01844. Epub 2017 May 1.


Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.


A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.


Nanoscale physicochemical properties of chain- and step-growth polymerized PEG hydrogels affect cell-material interactions.

Vats K, Marsh G, Harding K, Zampetakis I, Waugh RE, Benoit DS.

J Biomed Mater Res A. 2017 Apr;105(4):1112-1122. doi: 10.1002/jbm.a.36007. Epub 2017 Feb 2.


HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner.

Wendt T, Holme I, Dockter C, Preuß A, Thomas W, Druka A, Waugh R, Hansson M, Braumann I.

PLoS One. 2016 Dec 22;11(12):e0168924. doi: 10.1371/journal.pone.0168924. eCollection 2016.


Alternative Splicing of Barley Clock Genes in Response to Low Temperature.

Calixto CP, Simpson CG, Waugh R, Brown JW.

PLoS One. 2016 Dec 13;11(12):e0168028. doi: 10.1371/journal.pone.0168028. eCollection 2016.


SNP-Based QTL Mapping of 15 Complex Traits in Barley under Rain-Fed and Well-Watered Conditions by a Mixed Modeling Approach.

Mora F, Quitral YA, Matus I, Russell J, Waugh R, Del Pozo A.

Front Plant Sci. 2016 Jun 27;7:909. doi: 10.3389/fpls.2016.00909. eCollection 2016.


Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

Russell J, Mascher M, Dawson IK, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown JW, Schmid K, Kilian B, Muehlbauer GJ, Stein N, Waugh R.

Nat Genet. 2016 Sep;48(9):1024-30. doi: 10.1038/ng.3612. Epub 2016 Jul 18.


Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley.

Mascher M, Schuenemann VJ, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr SH, Green RE, Dawson IK, Russell J, Kilian B, Muehlbauer GJ, Waugh R, Fahima T, Krause J, Weiss E, Stein N.

Nat Genet. 2016 Sep;48(9):1089-93. doi: 10.1038/ng.3611. Epub 2016 Jul 18.


A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10.

Colas I, Macaulay M, Higgins JD, Phillips D, Barakate A, Posch M, Armstrong SJ, Franklin FC, Halpin C, Waugh R, Ramsay L.

New Phytol. 2016 Nov;212(3):693-707. doi: 10.1111/nph.14061. Epub 2016 Jul 8. Erratum in: New Phytol. 2018 Oct;220(1):348.


A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N.

Plant Physiol. 2016 Jun;171(2):1113-27. doi: 10.1104/pp.16.00124. Epub 2016 Apr 14.


A simple approach for bioactive surface calibration using evanescent waves.

Marsh G, Waugh RE.

J Microsc. 2016 Jun;262(3):245-51. doi: 10.1111/jmi.12358. Epub 2015 Dec 21.


Genetic Diversity and Genome Wide Association Study of β-Glucan Content in Tetraploid Wheat Grains.

Marcotuli I, Houston K, Schwerdt JG, Waugh R, Fincher GB, Burton RA, Blanco A, Gadaleta A.

PLoS One. 2016 Apr 5;11(4):e0152590. doi: 10.1371/journal.pone.0152590. eCollection 2016.


The Maltase Involved in Starch Metabolism in Barley Endosperm Is Encoded by a Single Gene.

Andriotis VM, Saalbach G, Waugh R, Field RA, Smith AM.

PLoS One. 2016 Mar 24;11(3):e0151642. doi: 10.1371/journal.pone.0151642. eCollection 2016.


The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation.

Jöst M, Hensel G, Kappel C, Druka A, Sicard A, Hohmann U, Beier S, Himmelbach A, Waugh R, Kumlehn J, Stein N, Lenhard M.

Curr Biol. 2016 Apr 4;26(7):903-9. doi: 10.1016/j.cub.2016.01.047. Epub 2016 Mar 17.


Genomic Selection in Multi-environment Crop Trials.

Oakey H, Cullis B, Thompson R, Comadran J, Halpin C, Waugh R.

G3 (Bethesda). 2016 May 3;6(5):1313-26. doi: 10.1534/g3.116.027524.


The Dynamics of Transcript Abundance during Cellularization of Developing Barley Endosperm.

Zhang R, Tucker MR, Burton RA, Shirley NJ, Little A, Morris J, Milne L, Houston K, Hedley PE, Waugh R, Fincher GB.

Plant Physiol. 2016 Mar;170(3):1549-65. doi: 10.1104/pp.15.01690. Epub 2016 Jan 11.

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