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Items: 13


Machine learning approach for distinguishing malignant and benign lung nodules utilizing standardized perinodular parenchymal features from CT.

Uthoff J, Stephens MJ, Newell JD Jr, Hoffman EA, Larson J, Koehn N, De Stefano FA, Lusk CM, Wenzlaff AS, Watza D, Neslund-Dudas C, Carr LL, Lynch DA, Schwartz AG, Sieren JC.

Med Phys. 2019 Jul;46(7):3207-3216. doi: 10.1002/mp.13592. Epub 2019 Jun 7.


Profiling the Mutational Landscape in Known Driver Genes and Novel Genes in African American Non-Small Cell Lung Cancer Patients.

Lusk CM, Watza D, Dyson G, Craig D, Ratliff V, Wenzlaff AS, Lonardo F, Bollig-Fischer A, Bepler G, Purrington K, Gadgeel S, Schwartz AG.

Clin Cancer Res. 2019 Jul 15;25(14):4300-4308. doi: 10.1158/1078-0432.CCR-18-2439. Epub 2019 Apr 12.


Quantitative Imaging Markers of Lung Function in a Smoking Population Distinguish COPD Subgroups with Differential Lung Cancer Risk.

Lusk CM, Wenzlaff AS, Watza D, Sieren JC, Robinette N, Walworth G, Petrich M, Neslund-Dudas C, Flynn MJ, Song T, Spizarny D, Simoff MJ, Soubani AO, Gadgeel S, Schwartz AG.

Cancer Epidemiol Biomarkers Prev. 2019 Apr;28(4):724-730. doi: 10.1158/1055-9965.EPI-18-0886. Epub 2019 Jan 14.


Identification and Characterization of Synthetic Viability with ERCC1 Deficiency in Response to Interstrand Crosslinks in Lung Cancer.

Heyza JR, Lei W, Watza D, Zhang H, Chen W, Back JB, Schwartz AG, Bepler G, Patrick SM.

Clin Cancer Res. 2019 Apr 15;25(8):2523-2536. doi: 10.1158/1078-0432.CCR-18-3094. Epub 2018 Dec 11.


Prognostic modeling of the immune-centric transcriptome reveals interleukin signaling candidates contributing to differential patient outcomes.

Watza D, Lusk CM, Dyson G, Purrington KS, Chen K, Wenzlaff AS, Ratliff V, Neslund-Dudas C, Bepler G, Schwartz AG.

Carcinogenesis. 2018 Dec 31;39(12):1447-1454. doi: 10.1093/carcin/bgy119.


Transcriptional programs of tumor infiltrating T-cells provide insight into mechanisms of immune response and new targets for immunotherapy.

Watza D, Purrington KS, Chen K, Schwartz AG.

J Thorac Dis. 2017 Nov;9(11):4162-4164. doi: 10.21037/jtd.2017.10.35. No abstract available.


Addressing Underrepresented Populations in Lung Cancer Research: The Hispanic/Latino Lung Cancer Registry Identifies Distinct Mutation Profiles for NSCLC.

Watza D, Schwartz AG.

J Thorac Oncol. 2017 Dec;12(12):1744-1745. doi: 10.1016/j.jtho.2017.09.1960. No abstract available.


Environmental perturbations lead to extensive directional shifts in RNA processing.

Richards AL, Watza D, Findley A, Alazizi A, Wen X, Pai AA, Pique-Regi R, Luca F.

PLoS Genet. 2017 Oct 12;13(10):e1006995. doi: 10.1371/journal.pgen.1006995. eCollection 2017 Oct.


High-throughput allele-specific expression across 250 environmental conditions.

Moyerbrailean GA, Richards AL, Kurtz D, Kalita CA, Davis GO, Harvey CT, Alazizi A, Watza D, Sorokin Y, Hauff N, Zhou X, Wen X, Pique-Regi R, Luca F.

Genome Res. 2016 Dec;26(12):1627-1638. Epub 2016 Oct 19.


Risk of Lung Cancer Associated with COPD Phenotype Based on Quantitative Image Analysis.

Schwartz AG, Lusk CM, Wenzlaff AS, Watza D, Pandolfi S, Mantha L, Cote ML, Soubani AO, Walworth G, Wozniak A, Neslund-Dudas C, Ardisana AA, Flynn MJ, Song T, Spizarny DL, Kvale PA, Chapman RA, Gadgeel SM.

Cancer Epidemiol Biomarkers Prev. 2016 Sep;25(9):1341-7. doi: 10.1158/1055-9965.EPI-16-0176. Epub 2016 Jul 6.


Whole-exome sequencing reveals genetic variability among lung cancer cases subphenotyped for emphysema.

Lusk CM, Wenzlaff AS, Dyson G, Purrington KS, Watza D, Land S, Soubani AO, Gadgeel SM, Schwartz AG.

Carcinogenesis. 2016 Feb;37(2):139-144. doi: 10.1093/carcin/bgv248. Epub 2015 Dec 30.


A high-throughput RNA-seq approach to profile transcriptional responses.

Moyerbrailean GA, Davis GO, Harvey CT, Watza D, Wen X, Pique-Regi R, Luca F.

Sci Rep. 2015 Oct 29;5:14976. doi: 10.1038/srep14976.


Phylogenetic Relationships and Morphological Character Evolution of Photosynthetic Euglenids (Excavata) Inferred from Taxon-rich Analyses of Five Genes.

Karnkowska A, Bennett MS, Watza D, Kim JI, Zakryś B, Triemer RE.

J Eukaryot Microbiol. 2015 May-Jun;62(3):362-73. doi: 10.1111/jeu.12192. Epub 2014 Dec 2.


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