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Items: 20

1.

Effects of Rht-B1 and Ppd-D1 loci on pollinator traits in wheat.

Okada T, Jayasinghe JEARM, Eckermann P, Watson-Haigh NS, Warner P, Hendrikse Y, Baes M, Tucker EJ, Laga H, Kato K, Albertsen M, Wolters P, Fleury D, Baumann U, Whitford R.

Theor Appl Genet. 2019 Jul;132(7):1965-1979. doi: 10.1007/s00122-019-03329-w. Epub 2019 Mar 21.

PMID:
30899967
2.

CRISPR/Cas9-mediated knockout of Ms1 enables the rapid generation of male-sterile hexaploid wheat lines for use in hybrid seed production.

Okada A, Arndell T, Borisjuk N, Sharma N, Watson-Haigh NS, Tucker EJ, Baumann U, Langridge P, Whitford R.

Plant Biotechnol J. 2019 Mar 6. doi: 10.1111/pbi.13106. [Epub ahead of print]

3.

DAWN: a resource for yielding insights into the diversity among wheat genomes.

Watson-Haigh NS, Suchecki R, Kalashyan E, Garcia M, Baumann U.

BMC Genomics. 2018 Dec 17;19(1):941. doi: 10.1186/s12864-018-5228-2.

4.

Best practice data life cycle approaches for the life sciences.

Griffin PC, Khadake J, LeMay KS, Lewis SE, Orchard S, Pask A, Pope B, Roessner U, Russell K, Seemann T, Treloar A, Tyagi S, Christiansen JH, Dayalan S, Gladman S, Hangartner SB, Hayden HL, Ho WWH, Keeble-Gagnère G, Korhonen PK, Neish P, Prestes PR, Richardson MF, Watson-Haigh NS, Wyres KL, Young ND, Schneider MV.

Version 2. F1000Res. 2017 Aug 31 [revised 2018 Jan 1];6:1618. doi: 10.12688/f1000research.12344.2. eCollection 2017.

5.

POTAGE: A Visualisation Tool for Speeding up Gene Discovery in Wheat.

Suchecki R, Watson-Haigh NS, Baumann U.

Sci Rep. 2017 Oct 30;7(1):14315. doi: 10.1038/s41598-017-14591-7.

6.

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017.

7.

Development of a cloud-based Bioinformatics Training Platform.

Revote J, Watson-Haigh NS, Quenette S, Bethwaite B, McGrath A, Shang CA.

Brief Bioinform. 2017 May 1;18(3):537-544. doi: 10.1093/bib/bbw032.

8.

The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance.

Amarasinghe S, Watson-Haigh NS, Gilliham M, Roy S, Baumann U.

Mol Phylogenet Evol. 2016 Jul;100:135-147. doi: 10.1016/j.ympev.2016.03.031. Epub 2016 Apr 1.

PMID:
27044608
9.

Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops.

Watson-Haigh NS, Revote J, Suchecki R, Tyagi S, Corley SM, Shang CA, McGrath A.

Brief Bioinform. 2017 Mar 1;18(2):348-355. doi: 10.1093/bib/bbw013.

10.

Genome-Wide Identification of MicroRNAs in Leaves and the Developing Head of Four Durum Genotypes during Water Deficit Stress.

Liu H, Searle IR, Watson-Haigh NS, Baumann U, Mather DE, Able AJ, Able JA.

PLoS One. 2015 Nov 12;10(11):e0142799. doi: 10.1371/journal.pone.0142799. eCollection 2015.

11.

The Na(+) transporter, TaHKT1;5-D, limits shoot Na(+) accumulation in bread wheat.

Byrt CS, Xu B, Krishnan M, Lightfoot DJ, Athman A, Jacobs AK, Watson-Haigh NS, Plett D, Munns R, Tester M, Gilliham M.

Plant J. 2014 Nov;80(3):516-26. doi: 10.1111/tpj.12651. Epub 2014 Oct 1.

12.

Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Watson-Haigh NS, Shang CA, Haimel M, Kostadima M, Loos R, Deshpande N, Duesing K, Li X, McGrath A, McWilliam S, Michnowicz S, Moolhuijzen P, Quenette S, Revote JN, Tyagi S, Schneider MV.

Brief Bioinform. 2013 Sep;14(5):563-74. doi: 10.1093/bib/bbt022. Epub 2013 Mar 29.

13.

Genetic architecture of gene expression in the chicken.

Stanley D, Watson-Haigh NS, Cowled CJ, Moore RJ.

BMC Genomics. 2013 Jan 16;14:13. doi: 10.1186/1471-2164-14-13.

14.

Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data.

Kadarmideen HN, Watson-Haigh NS.

Bioinformation. 2012;8(18):855-61. doi: 10.6026/97320630008855. Epub 2012 Sep 21.

15.

SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments.

Ajawatanawong P, Atkinson GC, Watson-Haigh NS, Mackenzie B, Baldauf SL.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W340-7. doi: 10.1093/nar/gks561. Epub 2012 Jun 11.

16.

Genetic architecture of gene expression in ovine skeletal muscle.

Kogelman LJ, Byrne K, Vuocolo T, Watson-Haigh NS, Kadarmideen HN, Kijas JW, Oddy HV, Gardner GE, Gondro C, Tellam RL.

BMC Genomics. 2011 Dec 15;12:607. doi: 10.1186/1471-2164-12-607.

17.

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers.

Kadarmideen HN, Watson-Haigh NS, Andronicos NM.

Mol Biosyst. 2011 Jan;7(1):235-46. doi: 10.1039/c0mb00190b. Epub 2010 Nov 11. Erratum in: Mol Biosyst. 2011 Dec;7(12):3376.

PMID:
21072409
18.

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.

Goodswen SJ, Gondro C, Watson-Haigh NS, Kadarmideen HN.

BMC Bioinformatics. 2010 Jun 9;11:311. doi: 10.1186/1471-2105-11-311.

19.

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

Watson-Haigh NS, Kadarmideen HN, Reverter A.

Bioinformatics. 2010 Feb 1;26(3):411-3. doi: 10.1093/bioinformatics/btp674. Epub 2009 Dec 9.

PMID:
20007253
20.

Variation at range margins across multiple spatial scales: environmental temperature, population genetics and metabolomic phenotype.

Kunin WE, Vergeer P, Kenta T, Davey MP, Burke T, Woodward FI, Quick P, Mannarelli ME, Watson-Haigh NS, Butlin R.

Proc Biol Sci. 2009 Apr 22;276(1661):1495-506. doi: 10.1098/rspb.2008.1767. Epub 2009 Feb 25.

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