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Items: 1 to 50 of 67

1.

Statistical Workflow for Feature Selection in Human Metabolomics Data.

Antonelli J, Claggett BL, Henglin M, Kim A, Ovsak G, Kim N, Deng K, Rao K, Tyagi O, Watrous JD, Lagerborg KA, Hushcha PV, Demler OV, Mora S, Niiranen TJ, Pereira AC, Jain M, Cheng S.

Metabolites. 2019 Jul 12;9(7). pii: E143. doi: 10.3390/metabo9070143. Review.

2.

Revisiting the simulation of quantum Turing machines by quantum circuits.

Molina A, Watrous J.

Proc Math Phys Eng Sci. 2019 Jun;475(2226):20180767. doi: 10.1098/rspa.2018.0767. Epub 2019 Jun 12.

PMID:
31293355
3.

A Single Visualization Technique for Displaying Multiple Metabolite-Phenotype Associations.

Henglin M, Niiranen T, Watrous JD, Lagerborg KA, Antonelli J, Claggett BL, Demosthenes EJ, von Jeinsen B, Demler O, Vasan RS, Larson MG, Jain M, Cheng S.

Metabolites. 2019 Jul 2;9(7). pii: E128. doi: 10.3390/metabo9070128.

4.

Microbiota-Produced N-Formyl Peptide fMLF Promotes Obesity-Induced Glucose Intolerance.

Wollam J, Riopel M, Xu YJ, Johnson AMF, Ofrecio JM, Ying W, El Ouarrat D, Chan LS, Han AW, Mahmood NA, Ryan CN, Lee YS, Watrous JD, Chordia MD, Pan D, Jain M, Olefsky JM.

Diabetes. 2019 Jul;68(7):1415-1426. doi: 10.2337/db18-1307. Epub 2019 Apr 22.

PMID:
31010956
5.

Mapping Metabolic Events in the Cancer Cell Cycle Reveals Arginine Catabolism in the Committed SG2M Phase.

Roci I, Watrous JD, Lagerborg KA, Lafranchi L, Lindqvist A, Jain M, Nilsson R.

Cell Rep. 2019 Feb 12;26(7):1691-1700.e5. doi: 10.1016/j.celrep.2019.01.059.

6.

Self-reported Functional Status in US Service Members After Combat-Related Amputation.

Eskridge SL, Clouser MC, McCabe CT, Watrous JR, Galarneau MR.

Am J Phys Med Rehabil. 2019 Jul;98(7):631-635. doi: 10.1097/PHM.0000000000001140.

PMID:
30664528
7.

Directed Non-targeted Mass Spectrometry and Chemical Networking for Discovery of Eicosanoids and Related Oxylipins.

Watrous JD, Niiranen TJ, Lagerborg KA, Henglin M, Xu YJ, Rong J, Sharma S, Vasan RS, Larson MG, Armando A, Mora S, Quehenberger O, Dennis EA, Cheng S, Jain M.

Cell Chem Biol. 2019 Mar 21;26(3):433-442.e4. doi: 10.1016/j.chembiol.2018.11.015. Epub 2019 Jan 17.

PMID:
30661990
8.

Optimizing Assessment of Risk and Protection for Diverse Adolescent Outcomes: Do Risk and Protective Factors for Delinquency and Substance Use Also Predict Risky Sexual Behavior?

Fleming CM, Eisenberg N, Catalano RF, Kosterman R, Cambron C, David Hawkins J, Hobbs T, Berman I, Fleming T, Watrous J.

Prev Sci. 2019 Jul;20(5):788-799. doi: 10.1007/s11121-019-0987-9.

PMID:
30645734
9.

High-Throughput Measure of Bioactive Lipids Using Non-targeted Mass Spectrometry.

Lagerborg KA, Watrous JD, Cheng S, Jain M.

Methods Mol Biol. 2019;1862:17-35. doi: 10.1007/978-1-4939-8769-6_2.

PMID:
30315457
10.

Profiling the Metabolism of Human Cells by Deep 13C Labeling.

Grankvist N, Watrous JD, Lagerborg KA, Lyutvinskiy Y, Jain M, Nilsson R.

Cell Chem Biol. 2018 Nov 15;25(11):1419-1427.e4. doi: 10.1016/j.chembiol.2018.09.004. Epub 2018 Sep 27.

PMID:
30270114
11.

The Wounded Warrior Recovery Project: A Longitudinal Examination of Patient-Reported Outcomes Among Deployment-Injured Military Personnel.

Watrous JR, Dougherty AL, McCabe CT, Sack DI, Galarneau MR.

Mil Med. 2019 Mar 1;184(3-4):84-89. doi: 10.1093/milmed/usy243. No abstract available.

PMID:
30252116
12.

A Web Service Framework for Interactive Analysis of Metabolomics Data.

Lyutvinskiy Y, Watrous JD, Jain M, Nilsson R.

Anal Chem. 2017 Jun 6;89(11):5713-5718. doi: 10.1021/acs.analchem.7b00890. Epub 2017 May 17.

13.

The glutamate/cystine xCT antiporter antagonizes glutamine metabolism and reduces nutrient flexibility.

Shin CS, Mishra P, Watrous JD, Carelli V, D'Aurelio M, Jain M, Chan DC.

Nat Commun. 2017 Apr 21;8:15074. doi: 10.1038/ncomms15074.

14.

Estimation of flux ratios without uptake or release data: Application to serine and methionine metabolism.

Nilsson R, Roci I, Watrous J, Jain M.

Metab Eng. 2017 Sep;43(Pt B):137-146. doi: 10.1016/j.ymben.2017.02.005. Epub 2017 Feb 20.

15.

Visualization, Quantification, and Alignment of Spectral Drift in Population Scale Untargeted Metabolomics Data.

Watrous JD, Henglin M, Claggett B, Lehmann KA, Larson MG, Cheng S, Jain M.

Anal Chem. 2017 Feb 7;89(3):1399-1404. doi: 10.1021/acs.analchem.6b04337. Epub 2017 Jan 26.

16.

A Method for Measuring Metabolism in Sorted Subpopulations of Complex Cell Communities Using Stable Isotope Tracing.

Roci I, Gallart-Ayala H, Watrous J, Jain M, Wheelock CE, Nilsson R.

J Vis Exp. 2017 Feb 4;(120). doi: 10.3791/55011.

17.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N.

Nat Biotechnol. 2016 Aug 9;34(8):828-837. doi: 10.1038/nbt.3597.

18.

Discovery of tanshinone derivatives with anti-MRSA activity via targeted bio-transformation.

He W, Liu M, Huang P, Abdel-Mageed WM, Han J, Watrous JD, Nguyen DD, Wang W, Song F, Dai H, Zhang J, Quinn RJ, Grkovi T, Luo H, Zhang L, Liu X.

Synth Syst Biotechnol. 2016 Jul 1;1(3):187-194. doi: 10.1016/j.synbio.2016.05.002. eCollection 2016 Sep.

19.

Extended non-local games and monogamy-of-entanglement games.

Johnston N, Mittal R, Russo V, Watrous J.

Proc Math Phys Eng Sci. 2016 May;472(2189):20160003.

20.

Metabolite Profiling and Stable Isotope Tracing in Sorted Subpopulations of Mammalian Cells.

Roci I, Gallart-Ayala H, Schmidt A, Watrous J, Jain M, Wheelock CE, Nilsson R.

Anal Chem. 2016 Mar 1;88(5):2707-13. doi: 10.1021/acs.analchem.5b04071. Epub 2016 Feb 17.

PMID:
26855138
21.

Comparative genomics and metabolic profiling of the genus Lysobacter.

de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM.

BMC Genomics. 2015 Nov 23;16:991. doi: 10.1186/s12864-015-2191-z.

22.

Molecular and chemical dialogues in bacteria-protozoa interactions.

Song C, Mazzola M, Cheng X, Oetjen J, Alexandrov T, Dorrestein P, Watrous J, van der Voort M, Raaijmakers JM.

Sci Rep. 2015 Aug 6;5:12837. doi: 10.1038/srep12837.

23.

Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis.

Ivanisevic J, Elias D, Deguchi H, Averell PM, Kurczy M, Johnson CH, Tautenhahn R, Zhu Z, Watrous J, Jain M, Griffin J, Patti GJ, Siuzdak G.

Sci Rep. 2015 Aug 5;5:12757. doi: 10.1038/srep12757.

24.

Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds.

Van Der Voort M, Meijer HJ, Schmidt Y, Watrous J, Dekkers E, Mendes R, Dorrestein PC, Gross H, Raaijmakers JM.

Front Microbiol. 2015 Jul 7;6:693. doi: 10.3389/fmicb.2015.00693. eCollection 2015.

25.

Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.

Oetjen J, Veselkov K, Watrous J, McKenzie JS, Becker M, Hauberg-Lotte L, Kobarg JH, Strittmatter N, Mróz AK, Hoffmann F, Trede D, Palmer A, Schiffler S, Steinhorst K, Aichler M, Goldin R, Guntinas-Lichius O, von Eggeling F, Thiele H, Maedler K, Walch A, Maass P, Dorrestein PC, Takats Z, Alexandrov T.

Gigascience. 2015 May 4;4:20. doi: 10.1186/s13742-015-0059-4. eCollection 2015.

26.

Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil.

Michelsen CF, Watrous J, Glaring MA, Kersten R, Koyama N, Dorrestein PC, Stougaard P.

MBio. 2015 Mar 17;6(2):e00079. doi: 10.1128/mBio.00079-15.

27.

Necessary and sufficient quantum information characterization of Einstein-Podolsky-Rosen steering.

Piani M, Watrous J.

Phys Rev Lett. 2015 Feb 13;114(6):060404. Epub 2015 Feb 12.

28.

Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis.

Bleich R, Watrous JD, Dorrestein PC, Bowers AA, Shank EA.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):3086-91. doi: 10.1073/pnas.1414272112. Epub 2015 Feb 23.

29.

Analysis of folded pulse forming line operation.

Domonkos MT, Watrous J, Parker JV, Cavazos T, Slenes K, Heidger S, Brown D, Wilson D.

Rev Sci Instrum. 2014 Sep;85(9):094708. doi: 10.1063/1.4895768.

PMID:
25273755
30.

Quantitative molecular networking to profile marine cyanobacterial metabolomes.

Winnikoff JR, Glukhov E, Watrous J, Dorrestein PC, Gerwick WH.

J Antibiot (Tokyo). 2014 Jan;67(1):105-12. doi: 10.1038/ja.2013.120. Epub 2013 Nov 27.

31.

Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry.

Watrous J, Roach P, Heath B, Alexandrov T, Laskin J, Dorrestein PC.

Anal Chem. 2013 Nov 5;85(21):10385-91. doi: 10.1021/ac4023154. Epub 2013 Oct 14.

32.

Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome.

Traxler MF, Watrous JD, Alexandrov T, Dorrestein PC, Kolter R.

MBio. 2013 Aug 20;4(4). pii: e00459-13. doi: 10.1128/mBio.00459-13.

33.

MS/MS networking guided analysis of molecule and gene cluster families.

Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BØ, Pogliano K, Gutiérrez M, Dorrestein PC.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2611-20. doi: 10.1073/pnas.1303471110. Epub 2013 Jun 24.

34.

Microbial metabolic exchange in 3D.

Watrous JD, Phelan VV, Hsu CC, Moree WJ, Duggan BM, Alexandrov T, Dorrestein PC.

ISME J. 2013 Apr;7(4):770-80. doi: 10.1038/ismej.2012.155. Epub 2013 Jan 3.

35.

Primer on agar-based microbial imaging mass spectrometry.

Yang JY, Phelan VV, Simkovsky R, Watrous JD, Trial RM, Fleming TC, Wenter R, Moore BS, Golden SS, Pogliano K, Dorrestein PC.

J Bacteriol. 2012 Nov;194(22):6023-8. doi: 10.1128/JB.00823-12. Epub 2012 Jul 20. Review.

36.

The spectral networks paradigm in high throughput mass spectrometry.

Guthals A, Watrous JD, Dorrestein PC, Bandeira N.

Mol Biosyst. 2012 Oct;8(10):2535-44. doi: 10.1039/c2mb25085c. Review.

37.

Mass spectral molecular networking of living microbial colonies.

Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, Kersten RD, van der Voort M, Pogliano K, Gross H, Raaijmakers JM, Moore BS, Laskin J, Bandeira N, Dorrestein PC.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1743-52. doi: 10.1073/pnas.1203689109. Epub 2012 May 14.

38.

Imaging mass spectrometry in microbiology.

Watrous JD, Dorrestein PC.

Nat Rev Microbiol. 2011 Aug 8;9(9):683-94. doi: 10.1038/nrmicro2634. Review.

39.

The evolving field of imaging mass spectrometry and its impact on future biological research.

Watrous JD, Alexandrov T, Dorrestein PC.

J Mass Spectrom. 2011 Feb;46(2):209-22. doi: 10.1002/jms.1876. Epub 2011 Jan 24.

40.

Integrating '-omics' and natural product discovery platforms to investigate metabolic exchange in microbiomes.

Yang JY, Karr JR, Watrous JD, Dorrestein PC.

Curr Opin Chem Biol. 2011 Feb;15(1):79-87. doi: 10.1016/j.cbpa.2010.10.025. Epub 2010 Nov 17. Review.

41.

Capturing bacterial metabolic exchange using thin film desorption electrospray ionization-imaging mass spectrometry.

Watrous J, Hendricks N, Meehan M, Dorrestein PC.

Anal Chem. 2010 Mar 1;82(5):1598-600. doi: 10.1021/ac9027388.

42.

Expansion of the mycobacterial "PUPylome".

Watrous J, Burns K, Liu WT, Patel A, Hook V, Bafna V, Barry CE 3rd, Bark S, Dorrestein PC.

Mol Biosyst. 2010 Feb;6(2):376-85. doi: 10.1039/b916104j. Epub 2009 Nov 16.

43.

Imaging mass spectrometry of natural products.

Esquenazi E, Yang YL, Watrous J, Gerwick WH, Dorrestein PC.

Nat Prod Rep. 2009 Dec;26(12):1521-34. doi: 10.1039/b915674g. Epub 2009 Nov 9. Review.

PMID:
19936384
44.

All entangled states are useful for channel discrimination.

Piani M, Watrous J.

Phys Rev Lett. 2009 Jun 26;102(25):250501. Epub 2009 Jun 24.

PMID:
19659061
45.

Evolution of the thienopyridine class of inhibitors of IkappaB kinase-beta: part I: hit-to-lead strategies.

Morwick T, Berry A, Brickwood J, Cardozo M, Catron K, DeTuri M, Emeigh J, Homon C, Hrapchak M, Jacober S, Jakes S, Kaplita P, Kelly TA, Ksiazek J, Liuzzi M, Magolda R, Mao C, Marshall D, McNeil D, Prokopowicz A 3rd, Sarko C, Scouten E, Sledziona C, Sun S, Watrous J, Wu JP, Cywin CL.

J Med Chem. 2006 May 18;49(10):2898-908.

PMID:
16686533
46.

Bipartite subspaces having no bases distinguishable by local operations and classical communication.

Watrous J.

Phys Rev Lett. 2005 Aug 19;95(8):080505. Epub 2005 Aug 18.

PMID:
16196845
47.

Quantum fingerprinting.

Buhrman H, Cleve R, Watrous J, de Wolf R.

Phys Rev Lett. 2001 Oct 15;87(16):167902. Epub 2001 Sep 26.

PMID:
11690244
48.

A theoretical model for coordinating and documenting patient education.

Watrous J, Zappia P, Arthur C.

J Healthc Qual. 1996 Mar-Apr;18(2):22-5.

PMID:
10157250
49.

Designing an integrated, initial patient assessment.

Zappia P, Watrous J.

Jt Comm Perspect. 1995 Jan-Feb;15(1):13-5. No abstract available.

PMID:
10140366
50.

BIRM 270: a novel inhibitor of arachidonate release that blocks leukotriene B4 and platelet-activating factor biosynthesis in human neutrophils.

Farina PR, Graham AG, Hoffman AF, Watrous JM, Borgeat P, Nadeau M, Hansen G, Dinallo RM, Adams J, Miao CK, et al.

J Pharmacol Exp Ther. 1994 Dec;271(3):1418-26.

PMID:
7996454

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