Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 77

1.

Pedigree-based estimation of human mobile element retrotransposition rates.

Feusier J, Watkins WS, Thomas J, Farrell A, Witherspoon DJ, Baird L, Ha H, Xing J, Jorde LB.

Genome Res. 2019 Oct;29(10):1567-1577. doi: 10.1101/gr.247965.118.

2.

Targeted Gene Sequencing in Children with Crohn's Disease and Their Parents: Implications for Missing Heritability.

Chen JS, Hu F, Kugathasan S, Jorde LB, Nix D, Rutherford A, Denson L, Watkins WS, Prahalad S, Huff C, Guthery SL.

G3 (Bethesda). 2018 Aug 30;8(9):2881-2888. doi: 10.1534/g3.118.200404.

3.

Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands.

Jin SC, Homsy J, Zaidi S, Lu Q, Morton S, DePalma SR, Zeng X, Qi H, Chang W, Sierant MC, Hung WC, Haider S, Zhang J, Knight J, Bjornson RD, Castaldi C, Tikhonoa IR, Bilguvar K, Mane SM, Sanders SJ, Mital S, Russell MW, Gaynor JW, Deanfield J, Giardini A, Porter GA Jr, Srivastava D, Lo CW, Shen Y, Watkins WS, Yandell M, Yost HJ, Tristani-Firouzi M, Newburger JW, Roberts AE, Kim R, Zhao H, Kaltman JR, Goldmuntz E, Chung WK, Seidman JG, Gelb BD, Seidman CE, Lifton RP, Brueckner M.

Nat Genet. 2017 Nov;49(11):1593-1601. doi: 10.1038/ng.3970. Epub 2017 Oct 9.

4.

Extremely low-coverage whole genome sequencing in South Asians captures population genomics information.

Rustagi N, Zhou A, Watkins WS, Gedvilaite E, Wang S, Ramesh N, Muzny D, Gibbs RA, Jorde LB, Yu F, Xing J.

BMC Genomics. 2017 May 22;18(1):396. doi: 10.1186/s12864-017-3767-6.

5.

Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth: a case-control study.

Manuck TA, Watkins WS, Esplin MS, Biggio J, Bukowski R, Parry S, Zhan H, Huang H, Andrews W, Saade G, Sadovsky Y, Reddy UM, Ilekis J, Yandell M, Varner MW, Jorde LB; Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Genomics and Proteomics Network for Preterm Birth Research (GPN-PBR).

BJOG. 2018 Feb;125(3):343-350. doi: 10.1111/1471-0528.14485. Epub 2017 Jan 31.

6.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D.

Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21.

7.

Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia.

Tackney JC, Potter BA, Raff J, Powers M, Watkins WS, Warner D, Reuther JD, Irish JD, O'Rourke DH.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13833-8. doi: 10.1073/pnas.1511903112. Epub 2015 Oct 26.

8.

Global diversity, population stratification, and selection of human copy-number variation.

Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, Coe BP, Baker C, Nordenfelt S, Bamshad M, Jorde LB, Posukh OL, Sahakyan H, Watkins WS, Yepiskoposyan L, Abdullah MS, Bravi CM, Capelli C, Hervig T, Wee JT, Tyler-Smith C, van Driem G, Romero IG, Jha AR, Karachanak-Yankova S, Toncheva D, Comas D, Henn B, Kivisild T, Ruiz-Linares A, Sajantila A, Metspalu E, Parik J, Villems R, Starikovskaya EB, Ayodo G, Beall CM, Di Rienzo A, Hammer MF, Khusainova R, Khusnutdinova E, Klitz W, Winkler C, Labuda D, Metspalu M, Tishkoff SA, Dryomov S, Sukernik R, Patterson N, Reich D, Eichler EE.

Science. 2015 Sep 11;349(6253):aab3761. doi: 10.1126/science.aab3761. Epub 2015 Aug 6.

9.

Clinical and biochemical function of polymorphic NR0B1 GGAA-microsatellites in Ewing sarcoma: a report from the Children's Oncology Group.

Monument MJ, Johnson KM, McIlvaine E, Abegglen L, Watkins WS, Jorde LB, Womer RB, Beeler N, Monovich L, Lawlor ER, Bridge JA, Schiffman JD, Krailo MD, Randall RL, Lessnick SL.

PLoS One. 2014 Aug 5;9(8):e104378. doi: 10.1371/journal.pone.0104378. eCollection 2014.

10.

Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth prevention.

Manuck TA, Watkins WS, Moore B, Esplin MS, Varner MW, Jackson GM, Yandell M, Jorde L.

Am J Obstet Gynecol. 2014 Apr;210(4):321.e1-321.e21. doi: 10.1016/j.ajog.2014.01.013. Epub 2014 Mar 1.

11.

Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians.

Xing J, Wuren T, Simonson TS, Watkins WS, Witherspoon DJ, Wu W, Qin G, Huff CD, Jorde LB, Ge RL.

PLoS Genet. 2013;9(7):e1003634. doi: 10.1371/journal.pgen.1003634. Epub 2013 Jul 18.

12.

Effect of interleukin-6 polymorphism on risk of preterm birth within population strata: a meta-analysis.

Wu W, Clark EA, Stoddard GJ, Watkins WS, Esplin MS, Manuck TA, Xing J, Varner MW, Jorde LB.

BMC Genet. 2013 Apr 25;14:30. doi: 10.1186/1471-2156-14-30.

13.

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.

Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB.

Genome Res. 2013 Jul;23(7):1170-81. doi: 10.1101/gr.148973.112. Epub 2013 Apr 18.

14.

EWS/FLI-responsive GGAA microsatellites exhibit polymorphic differences between European and African populations.

Beck R, Monument MJ, Watkins WS, Smith R, Boucher KM, Schiffman JD, Jorde LB, Randall RL, Lessnick SL.

Cancer Genet. 2012 Jun;205(6):304-12. doi: 10.1016/j.cancergen.2012.04.004.

15.

Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World.

Watkins WS, Xing J, Huff C, Witherspoon DJ, Zhang Y, Perego UA, Woodward SR, Jorde LB.

BMC Genet. 2012 May 20;13:39. doi: 10.1186/1471-2156-13-39.

16.

Crohn's disease and genetic hitchhiking at IBD5.

Huff CD, Witherspoon DJ, Zhang Y, Gatenbee C, Denson LA, Kugathasan S, Hakonarson H, Whiting A, Davis CT, Wu W, Xing J, Watkins WS, Bamshad MJ, Bradfield JP, Bulayeva K, Simonson TS, Jorde LB, Guthery SL.

Mol Biol Evol. 2012 Jan;29(1):101-11. doi: 10.1093/molbev/msr151. Epub 2011 Aug 4.

17.

Maximum-likelihood estimation of recent shared ancestry (ERSA).

Huff CD, Witherspoon DJ, Simonson TS, Xing J, Watkins WS, Zhang Y, Tuohy TM, Neklason DW, Burt RW, Guthery SL, Woodward SR, Jorde LB.

Genome Res. 2011 May;21(5):768-74. doi: 10.1101/gr.115972.110. Epub 2011 Feb 8.

18.

Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes.

Simonson TS, Xing J, Barrett R, Jerah E, Loa P, Zhang Y, Watkins WS, Witherspoon DJ, Huff CD, Woodward S, Mowry B, Jorde LB.

PLoS One. 2011 Jan 31;6(1):e16338. doi: 10.1371/journal.pone.0016338.

19.

Genetic diversity in India and the inference of Eurasian population expansion.

Xing J, Watkins WS, Hu Y, Huff CD, Sabo A, Muzny DM, Bamshad MJ, Gibbs RA, Jorde LB, Yu F.

Genome Biol. 2010;11(11):R113. doi: 10.1186/gb-2010-11-11-r113. Epub 2010 Nov 24.

20.

Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping.

Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB.

Genomics. 2010 Oct;96(4):199-210. doi: 10.1016/j.ygeno.2010.07.004. Epub 2010 Jul 16.

21.

Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.

Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB.

BMC Genomics. 2010 Jun 30;11:410. doi: 10.1186/1471-2164-11-410.

22.

AGT genetic variation, plasma AGT, and blood pressure: An analysis of the Utah Genetic Reference Project pedigrees.

Watkins WS, Rohrwasser A, Peiffer A, Leppert MF, Lalouel JM, Jorde LB.

Am J Hypertens. 2010 Aug;23(8):917-23. doi: 10.1038/ajh.2010.83. Epub 2010 Apr 22.

PMID:
20414195
23.

Limited distribution of a cardiomyopathy-associated variant in India.

Simonson TS, Zhang Y, Huff CD, Xing J, Watkins WS, Witherspoon DJ, Woodward SR, Jorde LB.

Ann Hum Genet. 2010 Mar;74(2):184-8. doi: 10.1111/j.1469-1809.2010.00561.x. Epub 2010 Feb 18.

24.

Alu repeats increase local recombination rates.

Witherspoon DJ, Watkins WS, Zhang Y, Xing J, Tolpinrud WL, Hedges DJ, Batzer MA, Jorde LB.

BMC Genomics. 2009 Nov 16;10:530. doi: 10.1186/1471-2164-10-530.

25.

Genotype-phenotype analysis of angiotensinogen polymorphisms and essential hypertension: the importance of haplotypes.

Watkins WS, Hunt SC, Williams GH, Tolpinrud W, Jeunemaitre X, Lalouel JM, Jorde LB.

J Hypertens. 2010 Jan;28(1):65-75. doi: 10.1097/HJH.0b013e328332031a.

26.

Fine-scaled human genetic structure revealed by SNP microarrays.

Xing J, Watkins WS, Witherspoon DJ, Zhang Y, Guthery SL, Thara R, Mowry BJ, Bulayeva K, Weiss RB, Jorde LB.

Genome Res. 2009 May;19(5):815-25. doi: 10.1101/gr.085589.108.

27.

Genetic variation in South Indian castes: evidence from Y-chromosome, mitochondrial, and autosomal polymorphisms.

Watkins WS, Thara R, Mowry BJ, Zhang Y, Witherspoon DJ, Tolpinrud W, Bamshad MJ, Tirupati S, Padmavati R, Smith H, Nancarrow D, Filippich C, Jorde LB.

BMC Genet. 2008 Dec 12;9:86. doi: 10.1186/1471-2156-9-86.

28.

Strong evidence for a novel schizophrenia risk locus on chromosome 1p31.1 in homogeneous pedigrees from Tamil Nadu, India.

Holliday EG, Nyholt DR, Tirupati S, John S, Ramachandran P, Ramamurti M, Ramadoss AJ, Jeyagurunathan A, Kottiswaran S, Smith HJ, Filippich C, Nertney DA, Nancarrow DJ, Hayward NK, Watkins WS, Jorde LB, Thara R, Mowry BJ.

Am J Psychiatry. 2009 Feb;166(2):206-15. doi: 10.1176/appi.ajp.2008.08030442. Epub 2008 Oct 1. Erratum in: Am J Psychiatry. 2009 Feb;166(2):238.

PMID:
18829870
29.

High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

Xing J, Watkins WS, Zhang Y, Witherspoon DJ, Jorde LB.

Genomics. 2008 Dec;92(6):452-6. doi: 10.1016/j.ygeno.2008.08.007. Epub 2008 Sep 27.

30.

Culture creates genetic structure in the Caucasus: autosomal, mitochondrial, and Y-chromosomal variation in Daghestan.

Marchani EE, Watkins WS, Bulayeva K, Harpending HC, Jorde LB.

BMC Genet. 2008 Jul 17;9:47. doi: 10.1186/1471-2156-9-47.

31.

Microsatellites as EWS/FLI response elements in Ewing's sarcoma.

Gangwal K, Sankar S, Hollenhorst PC, Kinsey M, Haroldsen SC, Shah AA, Boucher KM, Watkins WS, Jorde LB, Graves BJ, Lessnick SL.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10149-54. doi: 10.1073/pnas.0801073105. Epub 2008 Jul 14.

32.

HapMap tagSNP transferability in multiple populations: general guidelines.

Xing J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB.

Genomics. 2008 Jul;92(1):41-51. doi: 10.1016/j.ygeno.2008.03.011. Epub 2008 May 14.

33.

Genetic similarities within and between human populations.

Witherspoon DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB.

Genetics. 2007 May;176(1):351-9. Epub 2007 Mar 4.

34.

Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions.

Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB.

Hum Hered. 2006;62(1):30-46. Epub 2006 Sep 21.

PMID:
17003565
35.

Diversity and divergence among the tribal populations of India.

Watkins WS, Prasad BV, Naidu JM, Rao BB, Bhanu BA, Ramachandran B, Das PK, Gai PB, Reddy PC, Reddy PG, Sethuraman M, Bamshad MJ, Jorde LB.

Ann Hum Genet. 2005 Nov;69(Pt 6):680-92.

36.

Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation.

Shriver MD, Mei R, Parra EJ, Sonpar V, Halder I, Tishkoff SA, Schurr TG, Zhadanov SI, Osipova LP, Brutsaert TD, Friedlaender J, Jorde LB, Watkins WS, Bamshad MJ, Gutierrez G, Loi H, Matsuzaki H, Kittles RA, Argyropoulos G, Fernandez JR, Akey JM, Jones KW.

Hum Genomics. 2005 Jun;2(2):81-9.

37.

Genome-wide analysis of the human Alu Yb-lineage.

Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA.

Hum Genomics. 2004 Mar;1(3):167-78.

38.

Directional migration in the Hindu castes: inferences from mitochondrial, autosomal and Y-chromosomal data.

Wooding S, Ostler C, Prasad BV, Watkins WS, Sung S, Bamshad M, Jorde LB.

Hum Genet. 2004 Aug;115(3):221-9. Epub 2004 Jul 1.

PMID:
15232732
39.

Comprehensive analysis of two Alu Yd subfamilies.

Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA.

J Mol Evol. 2003;57 Suppl 1:S76-89.

PMID:
15008405
40.

Comprehensive analysis of Alu-associated diversity on the human sex chromosomes.

Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA.

Gene. 2003 Oct 23;317(1-2):103-10.

PMID:
14604797
41.

Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

Watkins WS, Rogers AR, Ostler CT, Wooding S, Bamshad MJ, Brassington AM, Carroll ML, Nguyen SV, Walker JA, Prasad BV, Reddy PG, Das PK, Batzer MA, Jorde LB.

Genome Res. 2003 Jul;13(7):1607-18. Epub 2003 Jun 12.

42.

Recently integrated Alu elements and human genomic diversity.

Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA.

Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.

PMID:
12777511
43.

Following the LINEs: an analysis of primate genomic variation at human-specific LINE-1 insertion sites.

Vincent BJ, Myers JS, Ho HJ, Kilroy GE, Walker JA, Watkins WS, Jorde LB, Batzer MA.

Mol Biol Evol. 2003 Aug;20(8):1338-48. Epub 2003 May 30.

PMID:
12777507
44.

LINE-1 preTa elements in the human genome.

Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA.

J Mol Biol. 2003 Feb 28;326(4):1127-46.

PMID:
12589758
45.

Human population genetic structure and inference of group membership.

Bamshad MJ, Wooding S, Watkins WS, Ostler CT, Batzer MA, Jorde LB.

Am J Hum Genet. 2003 Mar;72(3):578-89. Epub 2003 Jan 28.

46.

DNA sequence variation in a 3.7-kb noncoding sequence 5' of the CYP1A2 gene: implications for human population history and natural selection.

Wooding SP, Watkins WS, Bamshad MJ, Dunn DM, Weiss RB, Jorde LB.

Am J Hum Genet. 2002 Sep;71(3):528-42. Epub 2002 Aug 9.

47.

A strong signature of balancing selection in the 5' cis-regulatory region of CCR5.

Bamshad MJ, Mummidi S, Gonzalez E, Ahuja SS, Dunn DM, Watkins WS, Wooding S, Stone AC, Jorde LB, Weiss RB, Ahuja SK.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10539-44. Epub 2002 Jul 29.

48.

A comprehensive analysis of recently integrated human Ta L1 elements.

Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD, Henke J, Henke L, Moran JV, Jorde LB, Batzer MA.

Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.

49.

Mitochondrial DNA variation in Nicobarese Islanders.

Prasad BV, Ricker CE, Watkins WS, Dixon ME, Rao BB, Naidu JM, Jorde LB, Bamshad M.

Hum Biol. 2001 Oct;73(5):715-25.

PMID:
11758691
50.

Population genomics: a bridge from evolutionary history to genetic medicine.

Jorde LB, Watkins WS, Bamshad MJ.

Hum Mol Genet. 2001 Oct 1;10(20):2199-207. Review.

PMID:
11673402

Supplemental Content

Loading ...
Support Center