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Items: 33

1.

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites.

Koirala D, Shao Y, Koldobskaya Y, Fuller JR, Watkins AM, Shelke SA, Pilipenko EV, Das R, Rice PA, Piccirilli JA.

Nat Commun. 2019 Aug 9;10(1):3629. doi: 10.1038/s41467-019-11585-z.

2.

Using Rosetta for RNA homology modeling.

Watkins AM, Rangan R, Das R.

Methods Enzymol. 2019;623:177-207. doi: 10.1016/bs.mie.2019.05.026. Epub 2019 Jun 11.

PMID:
31239046
3.

Structure and ligand binding of the glutamine-II riboswitch.

Huang L, Wang J, Watkins AM, Das R, Lilley DMJ.

Nucleic Acids Res. 2019 Aug 22;47(14):7666-7675. doi: 10.1093/nar/gkz539.

4.
5.

Blind prediction of noncanonical RNA structure at atomic accuracy.

Watkins AM, Geniesse C, Kladwang W, Zakrevsky P, Jaeger L, Das R.

Sci Adv. 2018 May 25;4(5):eaar5316. doi: 10.1126/sciadv.aar5316. eCollection 2018 May.

6.

Rotamer Libraries for the High-Resolution Design of β-Amino Acid Foldamers.

Watkins AM, Craven TW, Renfrew PD, Arora PS, Bonneau R.

Structure. 2017 Nov 7;25(11):1771-1780.e3. doi: 10.1016/j.str.2017.09.005. Epub 2017 Oct 12.

7.

Protein Domain Mimics as Modulators of Protein-Protein Interactions.

Sawyer N, Watkins AM, Arora PS.

Acc Chem Res. 2017 Jun 20;50(6):1313-1322. doi: 10.1021/acs.accounts.7b00130. Epub 2017 May 31. Review.

8.

Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions.

Watkins AM, Bonneau R, Arora PS.

Methods Mol Biol. 2017;1561:291-307. doi: 10.1007/978-1-4939-6798-8_17.

PMID:
28236245
9.

Side-Chain Conformational Preferences Govern Protein-Protein Interactions.

Watkins AM, Bonneau R, Arora PS.

J Am Chem Soc. 2016 Aug 24;138(33):10386-9. doi: 10.1021/jacs.6b04892. Epub 2016 Aug 9.

10.

Protein-Protein Interactions Mediated by Helical Tertiary Structure Motifs.

Watkins AM, Wuo MG, Arora PS.

J Am Chem Soc. 2015 Sep 16;137(36):11622-30. doi: 10.1021/jacs.5b05527. Epub 2015 Sep 4.

11.

The effects of perfluorinated chemicals on adipocyte differentiation in vitro.

Watkins AM, Wood CR, Lin MT, Abbott BD.

Mol Cell Endocrinol. 2015 Jan 15;400:90-101. doi: 10.1016/j.mce.2014.10.020. Epub 2014 Nov 5.

PMID:
25448844
12.

Structure-based inhibition of protein-protein interactions.

Watkins AM, Arora PS.

Eur J Med Chem. 2015 Apr 13;94:480-8. doi: 10.1016/j.ejmech.2014.09.047. Epub 2014 Sep 16. Review.

13.

Anatomy of β-strands at protein-protein interfaces.

Watkins AM, Arora PS.

ACS Chem Biol. 2014 Aug 15;9(8):1747-54. doi: 10.1021/cb500241y. Epub 2014 Jun 9.

14.

Effects of side chains in helix nucleation differ from helix propagation.

Miller SE, Watkins AM, Kallenbach NR, Arora PS.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6636-41. doi: 10.1073/pnas.1322833111. Epub 2014 Apr 21.

15.

HippDB: a database of readily targeted helical protein-protein interactions.

Bergey CM, Watkins AM, Arora PS.

Bioinformatics. 2013 Nov 1;29(21):2806-7. doi: 10.1093/bioinformatics/btt483. Epub 2013 Aug 19.

16.

Testing for departures from additivity in mixtures of perfluoroalkyl acids (PFAAs).

Carr CK, Watkins AM, Wolf CJ, Abbott BD, Lau C, Gennings C.

Toxicology. 2013 Apr 5;306:169-75. doi: 10.1016/j.tox.2013.02.016. Epub 2013 Mar 5.

17.

Effects of perfluorooctanoic acid (PFOA) on expression of peroxisome proliferator-activated receptors (PPAR) and nuclear receptor-regulated genes in fetal and postnatal CD-1 mouse tissues.

Abbott BD, Wood CR, Watkins AM, Tatum-Gibbs K, Das KP, Lau C.

Reprod Toxicol. 2012 Jul;33(4):491-505. doi: 10.1016/j.reprotox.2011.11.005. Epub 2011 Dec 1.

PMID:
22154759
18.

Peroxisome proliferator-activated receptors alpha, Beta, and gamma mRNA and protein expression in human fetal tissues.

Abbott BD, Wood CR, Watkins AM, Das KP, Lau CS.

PPAR Res. 2010;2010. pii: 690907. doi: 10.1155/2010/690907. Epub 2010 Jul 26. Erratum in: PPAR Res. 2010;2010:627284.

19.

Effect of prior exercise on postprandial triglycerides in overweight young women after ingesting a high-carbohydrate meal.

Mitchell JB, Rowe JR, Shah M, Barbee JJ, Watkins AM, Stephens C, Simmons S.

Int J Sport Nutr Exerc Metab. 2008 Feb;18(1):49-65.

PMID:
18272933
20.

Heat shock protein (HSP-72) levels in skeletal muscle following work in heat.

Watkins AM, Cheek DJ, Harvey AE, Goodwin JD, Blair KE, Mitchell JB.

Aviat Space Environ Med. 2007 Sep;78(9):901-5.

PMID:
17891901
21.

Heat acclimation and HSP-72 expression in exercising humans.

Watkins AM, Cheek DJ, Harvey AE, Blair KE, Mitchell JB.

Int J Sports Med. 2008 Apr;29(4):269-76. Epub 2007 Sep 18.

PMID:
17879884
22.

Variations in promoter activity reveal a differential expression and physiology of glutamate transporters by glia in the developing and mature CNS.

Regan MR, Huang YH, Kim YS, Dykes-Hoberg MI, Jin L, Watkins AM, Bergles DE, Rothstein JD.

J Neurosci. 2007 Jun 20;27(25):6607-19.

23.

Analysis of cerebellar Purkinje cells using EAAT4 glutamate transporter promoter reporter in mice generated via bacterial artificial chromosome-mediated transgenesis.

Gincel D, Regan MR, Jin L, Watkins AM, Bergles DE, Rothstein JD.

Exp Neurol. 2007 Jan;203(1):205-12. Epub 2006 Oct 4.

PMID:
17022974
24.

Inhibition of virus-encoded thymidine kinase suppresses herpes simplex virus replication in vitro and in vivo.

Watkins AM, Dunford PJ, Moffatt AM, Wong-Kai-In P, Holland MJ, Pole DS, Thomas GM, Martin J, Roberts NA, Mulqueen MJ.

Antivir Chem Chemother. 1998 Jan;9(1):9-18.

PMID:
9875372
25.

Immune reconstitution in HAART-treated children with AIDS. Highly Active Anti-Retroviral Therapy.

Sharland M, Watkins AM, Dalgleish AG, Cammack N, Westby M.

Lancet. 1998 Aug 15;352(9127):577-8. No abstract available.

PMID:
9716089
26.

Analysis of the flow cytometer stain Hoechst 33342 on human spermatozoa.

Watkins AM, Chan PJ, Kalugdan TH, Patton WC, Jacobson JD, King A.

Mol Hum Reprod. 1996 Sep;2(9):709-12.

PMID:
9239686
27.
28.

Hydrocephalus ex vacuo and clasp thumb deformity due to congenital cytomegalovirus infection.

Fraser SH, O'Keefe RJ, Scurry JP, Watkins AM, Drew JH, Chow CW.

J Paediatr Child Health. 1994 Oct;30(5):450-2.

PMID:
7833087
29.

Alcohol burns in the neonate.

Watkins AM, Keogh EJ.

J Paediatr Child Health. 1992 Aug;28(4):306-8.

PMID:
1497958
30.

Jaundice: clinical practice in 88,000 liveborn infants.

Guaran RL, Drew JH, Watkins AM.

Aust N Z J Obstet Gynaecol. 1992 Aug;32(3):186-92.

PMID:
1445122
31.

Creutzfeldt-Jakob disease and blood transfusion.

Watkins AM.

BMJ. 1991 Jun 22;302(6791):1537. No abstract available.

32.

Blood pressure and cerebral haemorrhage and ischaemia in very low birthweight infants.

Watkins AM, West CR, Cooke RW.

Early Hum Dev. 1989 May;19(2):103-10.

PMID:
2737101
33.

Monitoring of end tidal CO2 in neonatal intensive care.

Watkins AM, Weindling AM.

Arch Dis Child. 1987 Aug;62(8):837-9.

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