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Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth.

Mullins Y, Keogh K, Kenny DA, Kelly A, O' Boyle P, Waters SM.

Sci Rep. 2020 Feb 13;10(1):2613. doi: 10.1038/s41598-020-59412-6.


Fulvestrant plus capivasertib versus placebo after relapse or progression on an aromatase inhibitor in metastatic, oestrogen receptor-positive breast cancer (FAKTION): a multicentre, randomised, controlled, phase 2 trial.

Jones RH, Casbard A, Carucci M, Cox C, Butler R, Alchami F, Madden TA, Bale C, Bezecny P, Joffe J, Moon S, Twelves C, Venkitaraman R, Waters S, Foxley A, Howell SJ.

Lancet Oncol. 2020 Feb 5. pii: S1470-2045(19)30817-4. doi: 10.1016/S1470-2045(19)30817-4. [Epub ahead of print]


Cytomegalovirus burden improves a predictive model identifying measures of vascular risk in renal transplant recipients and healthy adults.

Affandi JS, Lee S, Chih H, Brook E, Waters S, Howson P, Reid CM, Irish A, Price P.

J Med Virol. 2020 Feb 4. doi: 10.1002/jmv.25697. [Epub ahead of print]


The prevalence of loot boxes in mobile and desktop games.

Zendle D, Meyer R, Cairns P, Waters S, Ballou N.

Addiction. 2020 Jan 20. doi: 10.1111/add.14973. [Epub ahead of print]


Investigating temporal microbial dynamics in the rumen of beef calves raised on two farms during early life.

O'Hara E, Kenny DA, McGovern E, Byrne CJ, McCabe MS, Guan LL, Waters SM.

FEMS Microbiol Ecol. 2020 Feb 1;96(2). pii: fiz203. doi: 10.1093/femsec/fiz203.


Reducing the primate pet trade: Actions for primatologists.

Norconk MA, Atsalis S, Tully G, Santillán AM, Waters S, Knott CD, Ross SR, Shanee S, Stiles D.

Am J Primatol. 2020 Jan;82(1):e23079. doi: 10.1002/ajp.23079. Epub 2019 Dec 26.


The Detection of CMV in Saliva Can Mark a Systemic Infection with CMV in Renal Transplant Recipients.

Waters S, Lee S, Lloyd M, Irish A, Price P.

Int J Mol Sci. 2019 Oct 22;20(20). pii: E5230. doi: 10.3390/ijms20205230.


Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response.

Johnston D, Earley B, McCabe MS, Lemon K, Duffy C, McMenamy M, Cosby SL, Kim J, Blackshields G, Taylor JF, Waters SM.

Sci Rep. 2019 Oct 14;9(1):14736. doi: 10.1038/s41598-019-51094-z.


Liver transcriptome profiling of beef steers with divergent growth rate, feed intake, or metabolic body weight phenotypes1.

Mukiibi R, Vinsky M, Keogh K, Fitzsimmons C, Stothard P, Waters SM, Li C.

J Anim Sci. 2019 Nov 4;97(11):4386-4404. doi: 10.1093/jas/skz315.


Deciphering Effects of Uncontrolled Cytomegalovirus Replication on Immune Responses in Cytomegalovirus DNA-Positive Renal Transplant Recipients.

Makwana N, Waters S, Irish A, Howson P, Price P.

Viral Immunol. 2019 Oct;32(8):355-360. doi: 10.1089/vim.2019.0014. Epub 2019 Sep 19.


Targeted Activation of Cystic Fibrosis Transmembrane Conductance Regulator.

Villamizar O, Waters SA, Scott T, Saayman S, Grepo N, Urak R, Davis A, Jaffe A, Morris KV.

Mol Ther. 2019 Oct 2;27(10):1737-1748. doi: 10.1016/j.ymthe.2019.07.002. Epub 2019 Jul 15.


Long-term effects of prior diets, dietary transition and pregnancy on adipose gene expression in dairy heifers.

Wærp HKL, Waters SM, McCabe MS, Cormican P, Salte R.

PLoS One. 2019 Jul 3;14(7):e0218723. doi: 10.1371/journal.pone.0218723. eCollection 2019.


The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency.

Higgins MG, Kenny DA, Fitzsimons C, Blackshields G, Coyle S, McKenna C, McGee M, Morris DW, Waters SM.

BMC Genomics. 2019 Jun 26;20(1):525. doi: 10.1186/s12864-019-5906-8.


Waking the sleeping dragon: gene expression profiling reveals adaptive strategies of the hibernating reptile Pogona vitticeps.

Capraro A, O'Meally D, Waters SA, Patel HR, Georges A, Waters PD.

BMC Genomics. 2019 Jun 6;20(1):460. doi: 10.1186/s12864-019-5750-x.


Nonlinear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains.

Sprague D, Waters SA, Kirk JM, Wang JR, Samollow PB, Waters PD, Calabrese JM.

RNA. 2019 Aug;25(8):1004-1019. doi: 10.1261/rna.069815.118. Epub 2019 May 16.


Identifying chondrogenesis strategies for tissue engineering of articular cartilage.

Chen MJ, Whiteley JP, Please CP, Ehlicke F, Waters SL, Byrne HM.

J Tissue Eng. 2019 Apr 22;10:2041731419842431. doi: 10.1177/2041731419842431. eCollection 2019 Jan-Dec.


Early glucose abnormalities are associated with pulmonary inflammation in young children with cystic fibrosis.

Prentice BJ, Ooi CY, Strachan RE, Hameed S, Ebrahimkhani S, Waters SA, Verge CF, Widger J.

J Cyst Fibros. 2019 Nov;18(6):869-873. doi: 10.1016/j.jcf.2019.03.010. Epub 2019 Apr 26.


Gene co-expression networks contributing to the expression of compensatory growth in metabolically active tissues in cattle.

Keogh K, Kenny DA, Waters SM.

Sci Rep. 2019 Apr 15;9(1):6093. doi: 10.1038/s41598-019-42608-w.


Complex immune responses and molecular reactions to pathogens and disease in a desert reptile (Gopherus agassizii).

Drake KK, Aiello CM, Bowen L, Lewison RL, Esque TC, Nussear KE, Waters SC, Hudson PJ.

Ecol Evol. 2019 Feb 18;9(5):2516-2534. doi: 10.1002/ece3.4897. eCollection 2019 Mar.


Effect of dietary n-3 polyunsaturated fatty acid supplementation and post-insemination plane of nutrition on systemic concentrations of metabolic analytes, progesterone, hepatic gene expression and embryo development and survival in beef heifers.

Doyle DN, Lonergan P, Diskin MG, Pierce KM, Kelly AK, Stanton C, Waters SM, Parr MH, Kenny DA.

Theriogenology. 2019 Mar 15;127:102-113. doi: 10.1016/j.theriogenology.2018.12.037. Epub 2018 Dec 26.


Palbociclib and endocrine therapy in heavily pretreated hormone receptor-positive HER2-negative advanced breast cancer: the UK Compassionate Access Programme experience.

Battisti NML, Kingston B, King J, Denton A, Waters S, Sita-Lumsden A, Rehman F, Stavraka C, Kristeleit H, Sawyer E, Houghton D, Davidson N, Howell S, Choy J, Harper P, Roylance R, Fharat R, Mohammed K, Ring A, Johnston S.

Breast Cancer Res Treat. 2019 Apr;174(3):731-740. doi: 10.1007/s10549-019-05134-x. Epub 2019 Jan 17.


Incorporating social dimensions in planning, managing and evaluating environmental projects.

Goggin CL, Barrett T, Leys J, Summerell G, Gorrod E, Waters S, Littleboy M, Auld TD, Drielsma MJ, Jenkins BR.

Environ Manage. 2019 Feb;63(2):215-232. doi: 10.1007/s00267-018-01131-w. Epub 2019 Jan 11.


Human Primary Epithelial Cell Models: Promising Tools in the Era of Cystic Fibrosis Personalized Medicine.

Awatade NT, Wong SL, Hewson CK, Fawcett LK, Kicic A, Jaffe A, Waters SA.

Front Pharmacol. 2018 Dec 7;9:1429. doi: 10.3389/fphar.2018.01429. eCollection 2018. Review.


Curvature- and fluid-stress-driven tissue growth in a tissue-engineering scaffold pore.

Sanaei P, Cummings LJ, Waters SL, Griffiths IM.

Biomech Model Mechanobiol. 2019 Jun;18(3):589-605. doi: 10.1007/s10237-018-1103-y. Epub 2018 Dec 12.


Canada's global leadership and Indigenous people.

Stime B, Laliberte N, Mackie J, Waters S.

Lancet. 2018 Dec 1;392(10162):2348-2349. doi: 10.1016/S0140-6736(18)32757-0. No abstract available.


Not in front of the kids: Effects of parental suppression on socialization behaviors during cooperative parent-child interactions.

Karnilowicz HR, Waters SF, Mendes WB.

Emotion. 2019 Oct;19(7):1183-1191. doi: 10.1037/emo0000527. Epub 2018 Nov 26.


Correction to: Residual feed intake phenotype and gender affect the expression of key genes of the lipogenesis pathway in subcutaneous adipose tissue of beef cattle.

McKenna C, Porter RK, Keogh KA, Waters SM, McGee M, Kenny DA.

J Anim Sci Biotechnol. 2018 Nov 7;9:84. doi: 10.1186/s40104-018-0300-y. eCollection 2018.


The Fluid Mechanics of Ureteroscope Irrigation.

Williams JG, Turney BW, Rauniyar NP, Harrah TP, Waters SL, Moulton DE.

J Endourol. 2019 Jan;33(1):28-34. doi: 10.1089/end.2018.0707.


Effect of Early Calf-Hood Nutrition on the Transcriptional Regulation of the Hypothalamic-Pituitary-Testicular axis in Holstein-Friesian Bull Calves.

English AM, Byrne CJ, Cormican P, Waters SM, Fair S, Kenny DA.

Sci Rep. 2018 Nov 8;8(1):16577. doi: 10.1038/s41598-018-34611-4.


Blood immune transcriptome analysis of artificially fed dairy calves and naturally suckled beef calves from birth to 7 days of age.

Surlis C, Earley B, McGee M, Keogh K, Cormican P, Blackshields G, Tiernan K, Dunn A, Morrison S, Arguello A, Waters SM.

Sci Rep. 2018 Oct 18;8(1):15461. doi: 10.1038/s41598-018-33627-0.


Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.

Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Muñoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yáñez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, McAllister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, do Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, McEwan NR, Morrisson S, Mayorga OL, Elliott C, Morgavi DP.

Front Microbiol. 2018 Sep 25;9:2161. doi: 10.3389/fmicb.2018.02161. eCollection 2018. Review.


Role of early life nutrition on regulating the hypothalamic–anterior pituitary–testicular axis of the bull

English AM, Kenny DA, Byrne CJ, Sauerwein H, Urh C, Crowe MA, Staub C, Waters SM, Fair S.

Reproduction. 2018 Oct 1;156(4):283-297. doi: 10.1530/REP-17-0671.


Management of Anesthesia and Delivery in Women With Chiari I Malformations.

Waters JFR, OʼNeal MA, Pilato M, Waters S, Larkin JC, Waters JH.

Obstet Gynecol. 2018 Nov;132(5):1180-1184. doi: 10.1097/AOG.0000000000002943.


Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning.

O'Hara E, Kelly A, McCabe MS, Kenny DA, Guan LL, Waters SM.

Sci Rep. 2018 Oct 8;8(1):14901. doi: 10.1038/s41598-018-33122-6.


GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle.

Higgins MG, Fitzsimons C, McClure MC, McKenna C, Conroy S, Kenny DA, McGee M, Waters SM, Morris DW.

Sci Rep. 2018 Sep 24;8(1):14301. doi: 10.1038/s41598-018-32374-6.


RNA-seq analysis of bovine adipose tissue in heifers fed diets differing in energy and protein content.

Wærp HKL, Waters SM, McCabe MS, Cormican P, Salte R.

PLoS One. 2018 Sep 20;13(9):e0201284. doi: 10.1371/journal.pone.0201284. eCollection 2018.


16S rRNA Sequencing Reveals Relationship Between Potent Cellulolytic Genera and Feed Efficiency in the Rumen of Bulls.

McGovern E, Kenny DA, McCabe MS, Fitzsimons C, McGee M, Kelly AK, Waters SM.

Front Microbiol. 2018 Aug 10;9:1842. doi: 10.3389/fmicb.2018.01842. eCollection 2018.


Lattice and continuum modelling of a bioactive porous tissue scaffold.

Krause AL, Beliaev D, Van Gorder RA, Waters SL.

Math Med Biol. 2019 Sep 2;36(3):325-360. doi: 10.1093/imammb/dqy012.


Sharpea and Kandleria are lactic acid producing rumen bacteria that do not change their fermentation products when co-cultured with a methanogen.

Kumar S, Treloar BP, Teh KH, McKenzie CM, Henderson G, Attwood GT, Waters SM, Patchett ML, Janssen PH.

Anaerobe. 2018 Dec;54:31-38. doi: 10.1016/j.anaerobe.2018.07.008. Epub 2018 Jul 25.


Evaluating Established Methods for Rumen 16S rRNA Amplicon Sequencing With Mock Microbial Populations.

McGovern E, Waters SM, Blackshields G, McCabe MS.

Front Microbiol. 2018 Jun 25;9:1365. doi: 10.3389/fmicb.2018.01365. eCollection 2018.


Adaptation and conservation insights from the koala genome.

Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K.

Nat Genet. 2018 Aug;50(8):1102-1111. doi: 10.1038/s41588-018-0153-5. Epub 2018 Jul 2.


Invited review: Improving feed efficiency of beef cattle - the current state of the art and future challenges.

Kenny DA, Fitzsimons C, Waters SM, McGee M.

Animal. 2018 Sep;12(9):1815-1826. doi: 10.1017/S1751731118000976. Epub 2018 May 21. Review.


Transcriptome analyses reveal reduced hepatic lipid synthesis and accumulation in more feed efficient beef cattle.

Mukiibi R, Vinsky M, Keogh KA, Fitzsimmons C, Stothard P, Waters SM, Li C.

Sci Rep. 2018 May 8;8(1):7303. doi: 10.1038/s41598-018-25605-3.


The Methylome of Vertebrate Sex Chromosomes.

Waters SA, Capraro A, McIntyre KL, Marshall Graves JA, Waters PD.

Genes (Basel). 2018 May 1;9(5). pii: E230. doi: 10.3390/genes9050230. Review.


Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls.

English AM, Waters SM, Cormican P, Byrne CJ, Fair S, Kenny DA.

BMC Genomics. 2018 Apr 24;19(1):281. doi: 10.1186/s12864-018-4681-2.


Active and Persistent Cytomegalovirus Infections Affect T Cells in Young Adult HIV Patients Commencing Antiretroviral Therapy.

Ariyanto IA, Estiasari R, Waters S, Wulandari EAT, Fernandez S, Lee S, Price P.

Viral Immunol. 2018 Jul/Aug;31(6):472-479. doi: 10.1089/vim.2018.0014. Epub 2018 Apr 24.


Understanding Human-Animal Relations in the Context of Primate Conservation: A Multispecies Ethnographic Approach in North Morocco.

Waters S, Bell S, Setchell JM.

Folia Primatol (Basel). 2018;89(1):13-29. doi: 10.1159/000480079. Epub 2018 Apr 10.


On the Rocks: Using Discourse Analysis to Examine Relationships between Barbary Macaques (Macaca sylvanus) and People on Gibraltar.

Radford L, Alexander S, Waters S.

Folia Primatol (Basel). 2018;89(1):30-44. doi: 10.1159/000485125. Epub 2018 Apr 10.


Ethnographic Approaches in Primatology.

Dore KM, Radford L, Alexander S, Waters S.

Folia Primatol (Basel). 2018;89(1):5-12. doi: 10.1159/000485693. Epub 2018 Apr 10.


Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine jejunal epithelium.

Keogh K, Waters SM, Cormican P, Kelly AK, Kenny DA.

PLoS One. 2018 Mar 19;13(3):e0194445. doi: 10.1371/journal.pone.0194445. eCollection 2018.

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