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Items: 1 to 50 of 103

1.

Live cell monitoring of double strand breaks in S. cerevisiae.

Waterman DP, Zhou F, Li K, Lee CS, Tsabar M, Eapen VV, Mazzella A, Haber JE.

PLoS Genet. 2019 Mar 1;15(3):e1008001. doi: 10.1371/journal.pgen.1008001. eCollection 2019 Mar.

2.

Postruminal infusion of calcium gluconate increases milk fat production and alters fecal volatile fatty acid profile in lactating dairy cows.

Doelman J, McKnight LL, Carson M, Nichols K, Waterman DF, Metcalf JA.

J Dairy Sci. 2019 Feb;102(2):1274-1280. doi: 10.3168/jds.2018-15148. Epub 2018 Dec 24.

PMID:
30591339
3.

Improving signal strength in serial crystallography with DIALS geometry refinement.

Brewster AS, Waterman DG, Parkhurst JM, Gildea RJ, Young ID, O'Riordan LJ, Yano J, Winter G, Evans G, Sauter NK.

Acta Crystallogr D Struct Biol. 2018 Sep 1;74(Pt 9):877-894. doi: 10.1107/S2059798318009191. Epub 2018 Sep 3.

4.

Electron diffraction data processing with DIALS.

Clabbers MTB, Gruene T, Parkhurst JM, Abrahams JP, Waterman DG.

Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):506-518. doi: 10.1107/S2059798318007726. Epub 2018 May 30.

5.

DIALS: implementation and evaluation of a new integration package.

Winter G, Waterman DG, Parkhurst JM, Brewster AS, Gildea RJ, Gerstel M, Fuentes-Montero L, Vollmar M, Michels-Clark T, Young ID, Sauter NK, Evans G.

Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):85-97. doi: 10.1107/S2059798317017235. Epub 2018 Feb 1.

6.

CCP4i2: the new graphical user interface to the CCP4 program suite.

Potterton L, Agirre J, Ballard C, Cowtan K, Dodson E, Evans PR, Jenkins HT, Keegan R, Krissinel E, Stevenson K, Lebedev A, McNicholas SJ, Nicholls RA, Noble M, Pannu NS, Roth C, Sheldrick G, Skubak P, Turkenburg J, Uski V, von Delft F, Waterman D, Wilson K, Winn M, Wojdyr M.

Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):68-84. doi: 10.1107/S2059798317016035. Epub 2018 Feb 1.

7.

CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles.

Lemos BR, Kaplan AC, Bae JE, Ferrazzoli AE, Kuo J, Anand RP, Waterman DP, Haber JE.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E2040-E2047. doi: 10.1073/pnas.1716855115. Epub 2018 Feb 13. Erratum in: Proc Natl Acad Sci U S A. 2018 May 21;:.

8.

Background modelling of diffraction data in the presence of ice rings.

Parkhurst JM, Thorn A, Vollmar M, Winter G, Waterman DG, Fuentes-Montero L, Gildea RJ, Murshudov GN, Evans G.

IUCrJ. 2017 Aug 8;4(Pt 5):626-638. doi: 10.1107/S2052252517010259. eCollection 2017 Sep 1.

9.

Farrell valve relieves bloating in gastrostomy patient.

Phippen A, Brennan E, Ealing J, Kay S, Waterman D.

BMJ Support Palliat Care. 2017 Sep;7(3):258-260. doi: 10.1136/bmjspcare-2017-001375. Epub 2017 Jul 3.

PMID:
28676497
10.

Management of poorly controlled indolent systemic mastocytosis using narrowband UVB phototherapy.

Husain Z, Waterman D, Ellison K, DeSimone JA.

Cutis. 2017 May;99(5):E30-E33.

PMID:
28632811
11.

A pathway of targeted autophagy is induced by DNA damage in budding yeast.

Eapen VV, Waterman DP, Bernard A, Schiffmann N, Sayas E, Kamber R, Lemos B, Memisoglu G, Ang J, Mazella A, Chuartzman SG, Loewith RJ, Schuldiner M, Denic V, Klionsky DJ, Haber JE.

Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):E1158-E1167. doi: 10.1073/pnas.1614364114. Epub 2017 Feb 2.

12.

Robust background modelling in DIALS.

Parkhurst JM, Winter G, Waterman DG, Fuentes-Montero L, Gildea RJ, Murshudov GN, Evans G.

J Appl Crystallogr. 2016 Oct 21;49(Pt 6):1912-1921. eCollection 2016 Dec 1.

13.

Molecular symmetry-constrained systematic search approach to structure solution of the coiled-coil SRGAP2 F-BARx domain.

Sporny M, Guez-Haddad J, Waterman DG, Isupov MN, Opatowsky Y.

Acta Crystallogr D Struct Biol. 2016 Dec 1;72(Pt 12):1241-1253. Epub 2016 Nov 29.

PMID:
27917825
14.

Structure of photosystem II and substrate binding at room temperature.

Young ID, Ibrahim M, Chatterjee R, Gul S, Fuller F, Koroidov S, Brewster AS, Tran R, Alonso-Mori R, Kroll T, Michels-Clark T, Laksmono H, Sierra RG, Stan CA, Hussein R, Zhang M, Douthit L, Kubin M, de Lichtenberg C, Long Vo P, Nilsson H, Cheah MH, Shevela D, Saracini C, Bean MA, Seuffert I, Sokaras D, Weng TC, Pastor E, Weninger C, Fransson T, Lassalle L, Bräuer P, Aller P, Docker PT, Andi B, Orville AM, Glownia JM, Nelson S, Sikorski M, Zhu D, Hunter MS, Lane TJ, Aquila A, Koglin JE, Robinson J, Liang M, Boutet S, Lyubimov AY, Uervirojnangkoorn M, Moriarty NW, Liebschner D, Afonine PV, Waterman DG, Evans G, Wernet P, Dobbek H, Weis WI, Brunger AT, Zwart PH, Adams PD, Zouni A, Messinger J, Bergmann U, Sauter NK, Kern J, Yachandra VK, Yano J.

Nature. 2016 Dec 15;540(7633):453-457. doi: 10.1038/nature20161. Epub 2016 Nov 21.

15.

The 1.1 Å resolution structure of a periplasmic phosphate-binding protein from Stenotrophomonas maltophilia: a crystallization contaminant identified by molecular replacement using the entire Protein Data Bank.

Keegan R, Waterman DG, Hopper DJ, Coates L, Taylor G, Guo J, Coker AR, Erskine PT, Wood SP, Cooper JB.

Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):933-43. doi: 10.1107/S2059798316010433. Epub 2016 Jul 27.

PMID:
27487824
16.

Asf1 facilitates dephosphorylation of Rad53 after DNA double-strand break repair.

Tsabar M, Waterman DP, Aguilar F, Katsnelson L, Eapen VV, Memisoglu G, Haber JE.

Genes Dev. 2016 May 15;30(10):1211-24. doi: 10.1101/gad.280685.116.

17.

Diffraction-geometry refinement in the DIALS framework.

Waterman DG, Winter G, Gildea RJ, Parkhurst JM, Brewster AS, Sauter NK, Evans G.

Acta Crystallogr D Struct Biol. 2016 Apr;72(Pt 4):558-75. doi: 10.1107/S2059798316002187. Epub 2016 Mar 30.

18.

Proteomic Analysis Identifies Ribosome Reduction as an Effective Proteotoxic Stress Response.

Guerra-Moreno A, Isasa M, Bhanu MK, Waterman DP, Eapen VV, Gygi SP, Hanna J.

J Biol Chem. 2015 Dec 11;290(50):29695-706. doi: 10.1074/jbc.M115.684969. Epub 2015 Oct 21.

19.

Caffeine impairs resection during DNA break repair by reducing the levels of nucleases Sae2 and Dna2.

Tsabar M, Eapen VV, Mason JM, Memisoglu G, Waterman DP, Long MJ, Bishop DK, Haber JE.

Nucleic Acids Res. 2015 Aug 18;43(14):6889-901. doi: 10.1093/nar/gkv520. Epub 2015 May 27.

20.

Kinase dynamics. Using ancient protein kinases to unravel a modern cancer drug's mechanism.

Wilson C, Agafonov RV, Hoemberger M, Kutter S, Zorba A, Halpin J, Buosi V, Otten R, Waterman D, Theobald DL, Kern D.

Science. 2015 Feb 20;347(6224):882-6. doi: 10.1126/science.aaa1823.

21.

New methods for indexing multi-lattice diffraction data.

Gildea RJ, Waterman DG, Parkhurst JM, Axford D, Sutton G, Stuart DI, Sauter NK, Evans G, Winter G.

Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2652-66. doi: 10.1107/S1399004714017039. Epub 2014 Sep 27.

22.

dxtbx: the diffraction experiment toolbox.

Parkhurst JM, Brewster AS, Fuentes-Montero L, Waterman DG, Hattne J, Ashton AW, Echols N, Evans G, Sauter NK, Winter G.

J Appl Crystallogr. 2014 Jul 19;47(Pt 4):1459-1465. eCollection 2014 Aug 1.

23.

Live simian immunodeficiency virus vaccine correlate of protection: local antibody production and concentration on the path of virus entry.

Li Q, Zeng M, Duan L, Voss JE, Smith AJ, Pambuccian S, Shang L, Wietgrefe S, Southern PJ, Reilly CS, Skinner PJ, Zupancic ML, Carlis JV, Piatak M Jr, Waterman D, Reeves RK, Masek-Hammerman K, Derdeyn CA, Alpert MD, Evans DT, Kohler H, Müller S, Robinson J, Lifson JD, Burton DR, Johnson RP, Haase AT.

J Immunol. 2014 Sep 15;193(6):3113-25. doi: 10.4049/jimmunol.1400820. Epub 2014 Aug 18.

24.

The F-BAR protein Hof1 tunes formin activity to sculpt actin cables during polarized growth.

Graziano BR, Yu HY, Alioto SL, Eskin JA, Ydenberg CA, Waterman DP, Garabedian M, Goode BL.

Mol Biol Cell. 2014 Jun;25(11):1730-43. doi: 10.1091/mbc.E14-03-0850. Epub 2014 Apr 9.

25.

The importance of being fragrant.

Waterman D, Norton SA.

JAMA Dermatol. 2013 Dec;149(12):1413. doi: 10.1001/jamadermatol.2013.7556. No abstract available.

PMID:
24352723
26.

Cuz1/Ynl155w, a zinc-dependent ubiquitin-binding protein, protects cells from metalloid-induced proteotoxicity.

Hanna J, Waterman D, Isasa M, Elsasser S, Shi Y, Gygi S, Finley D.

J Biol Chem. 2014 Jan 17;289(3):1876-85. doi: 10.1074/jbc.M113.534032. Epub 2013 Dec 2.

27.

The caudate: a key node in the neuronal network imbalance of insomnia?

Stoffers D, Altena E, van der Werf YD, Sanz-Arigita EJ, Voorn TA, Astill RG, Strijers RL, Waterman D, Van Someren EJ.

Brain. 2014 Feb;137(Pt 2):610-20. doi: 10.1093/brain/awt329. Epub 2013 Nov 26.

28.

Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography.

Foadi J, Aller P, Alguel Y, Cameron A, Axford D, Owen RL, Armour W, Waterman DG, Iwata S, Evans G.

Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1617-32. doi: 10.1107/S0907444913012274. Epub 2013 Jul 20.

29.

S-Adenosyl-S-carboxymethyl-L-homocysteine: a novel cofactor found in the putative tRNA-modifying enzyme CmoA.

Byrne RT, Whelan F, Aller P, Bird LE, Dowle A, Lobley CM, Reddivari Y, Nettleship JE, Owens RJ, Antson AA, Waterman DG.

Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1090-8. doi: 10.1107/S0907444913004939. Epub 2013 May 15.

30.

Spg5 protein regulates the proteasome in quiescence.

Hanna J, Waterman D, Boselli M, Finley D.

J Biol Chem. 2012 Oct 5;287(41):34400-9. doi: 10.1074/jbc.M112.390294. Epub 2012 Aug 17.

31.

Structure and activity of a novel archaeal β-CASP protein with N-terminal KH domains.

Silva AP, Chechik M, Byrne RT, Waterman DG, Ng CL, Dodson EJ, Koonin EV, Antson AA, Smits C.

Structure. 2011 May 11;19(5):622-32. doi: 10.1016/j.str.2011.03.002.

32.

Estimation of errors in diffraction data measured by CCD area detectors.

Waterman D, Evans G.

J Appl Crystallogr. 2010 Oct 1;43(Pt 6):1356-1371. eCollection 2010 Dec 1.

33.

Spectroscopic and statistical methods in metabonomics.

Waterman DS, Bonner FW, Lindon JC.

Bioanalysis. 2009 Dec;1(9):1559-78. doi: 10.4155/bio.09.143. Review.

PMID:
21083104
34.

A qualitative study exploring perceptions and experiences of patients and clinicians of palliative medicine outpatient clinics in different settings.

Cawley D, Waterman D, Roberts D, Caress A.

Palliat Med. 2011 Jan;25(1):52-61. doi: 10.1177/0269216310375998. Epub 2010 Aug 18.

PMID:
20719815
35.

Structure of the Methanothermobacter thermautotrophicus exosome RNase PH ring.

Ng CL, Waterman DG, Antson AA, Ortiz-Lombardía M.

Acta Crystallogr D Biol Crystallogr. 2010 May;66(Pt 5):522-8. doi: 10.1107/S0907444910002908. Epub 2010 Apr 21.

PMID:
20445227
36.

Swallowing problems and dementia in acute hospital settings: practical guidance for the management of dysphagia.

Smith HA, Kindell J, Baldwin RC, Waterman D, Makin AJ.

Clin Med (Lond). 2009 Dec;9(6):544-8. Review.

37.

The influence of EDTA and citrate anticoagulant addition to human plasma on information recovery from NMR-based metabolic profiling studies.

Barton RH, Waterman D, Bonner FW, Holmes E, Clarke R; Procardis Consortium, Nicholson JK, Lindon JC.

Mol Biosyst. 2010 Jan;6(1):215-24. doi: 10.1039/b907021d. Epub 2009 Sep 28.

PMID:
20024083
38.

Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein.

Ng CL, Waterman DG, Koonin EV, Walters AD, Chong JP, Isupov MN, Lebedev AA, Bunka DH, Stockley PG, Ortiz-Lombardía M, Antson AA.

BMC Struct Biol. 2009 May 19;9:32. doi: 10.1186/1472-6807-9-32.

39.

Expression, purification, crystallization and preliminary X-ray studies of the TAN1 orthologue from Methanothermobacter thermautotrophicus.

Silva AP, Byrne RT, Chechik M, Smits C, Waterman DG, Antson AA.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Nov 1;64(Pt 11):1083-6. doi: 10.1107/S1744309108034039. Epub 2008 Oct 31.

40.

Application of high-throughput technologies to a structural proteomics-type analysis of Bacillus anthracis.

Au K, Berrow NS, Blagova E, Boucher IW, Boyle MP, Brannigan JA, Carter LG, Dierks T, Folkers G, Grenha R, Harlos K, Kaptein R, Kalliomaa AK, Levdikov VM, Meier C, Milioti N, Moroz O, Müller A, Owens RJ, Rzechorzek N, Sainsbury S, Stuart DI, Walter TS, Waterman DG, Wilkinson AJ, Wilson KS, Zaccai N, Esnouf RM, Fogg MJ.

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1267-75. Epub 2006 Sep 19.

PMID:
17001104
41.

Crystal structure of Bacillus anthracis ThiI, a tRNA-modifying enzyme containing the predicted RNA-binding THUMP domain.

Waterman DG, Ortiz-Lombardía M, Fogg MJ, Koonin EV, Antson AA.

J Mol Biol. 2006 Feb 10;356(1):97-110. Epub 2005 Nov 22.

PMID:
16343540
42.

Precision in transient electric birefringence measurements for colloids.

Jennings BR, Rudd PJ, Waterman DR.

J Colloid Interface Sci. 2005 Aug 1;288(1):304-7.

PMID:
15927592
44.

Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS.

Halket JM, Waterman D, Przyborowska AM, Patel RK, Fraser PD, Bramley PM.

J Exp Bot. 2005 Jan;56(410):219-43. Epub 2004 Dec 23. Review.

PMID:
15618298
45.

European experience with a novel noninvasive sensor for intra-amniotic or extra-amniotic evaluation of fetal oxygen saturation.

Hasenburg A, Bäuerle M, Waterman D, Würstlein R, Moberg K, Kleiber S, Grab D, Kieback DG.

J Soc Gynecol Investig. 2003 Sep;10(6):347-51.

PMID:
12969777
47.
48.

Effect of bovine somatotropin on reproductive function in lactating dairy cows.

Waterman DF, Silvia WJ, Hemken RW, Heersche G Jr, Swenson TS, Eggert RG.

Theriogenology. 1993 Nov;40(5):1015-28.

PMID:
16727384
49.

Copper status and requirement during the dry period and early lactation in multiparous Holstein cows.

Xin Z, Waterman DF, Hemken RW, Harmon RJ.

J Dairy Sci. 1993 Sep;76(9):2711-6.

50.

EEG spectral power analysis of phasic and tonic REM sleep in young and older male subjects.

Waterman D, Elton M, Hofman W, Woestenburg JC, Kok A.

J Sleep Res. 1993 Mar;2(1):21-27.

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