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Items: 1 to 50 of 89

1.

The Rapid Methylation of T-DNAs Upon Agrobacterium Inoculation in Plant Leaves.

Philips JG, Dudley KJ, Waterhouse PM, Hellens RP.

Front Plant Sci. 2019 Mar 15;10:312. doi: 10.3389/fpls.2019.00312. eCollection 2019.

2.

The Rise and Rise of Nicotiana benthamiana: A Plant for All Reasons.

Bally J, Jung H, Mortimer C, Naim F, Philips JG, Hellens R, Bombarely A, Goodin MM, Waterhouse PM.

Annu Rev Phytopathol. 2018 Aug 25;56:405-426. doi: 10.1146/annurev-phyto-080417-050141. Review.

PMID:
30149789
3.

A conditional silencing suppression system for transient expression.

Reis RS, Litholdo CG Jr, Bally J, Roberts TH, Waterhouse PM.

Sci Rep. 2018 Jun 21;8(1):9426. doi: 10.1038/s41598-018-27778-3.

4.

Improved insect-proofing: expressing double-stranded RNA in chloroplasts.

Bally J, Fishilevich E, Bowling AJ, Pence HE, Narva KE, Waterhouse PM.

Pest Manag Sci. 2018 Aug;74(8):1751-1758. doi: 10.1002/ps.4870. Epub 2018 Mar 7. Review.

5.

The phenotypic and molecular assessment of the non-conserved Arabidopsis MICRORNA163/S-ADENOSYL-METHYLTRANSFERASE regulatory module during biotic stress.

Litholdo CG Jr, Eamens AL, Waterhouse PM.

Mol Genet Genomics. 2018 Apr;293(2):503-523. doi: 10.1007/s00438-017-1399-9. Epub 2017 Dec 1.

PMID:
29196849
6.

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition.

Hart-Smith G, Reis RS, Waterhouse PM, Wilkins MR.

Front Plant Sci. 2017 Sep 27;8:1669. doi: 10.3389/fpls.2017.01669. eCollection 2017.

7.

The Luteovirus P4 Movement Protein Is a Suppressor of Systemic RNA Silencing.

Fusaro AF, Barton DA, Nakasugi K, Jackson C, Kalischuk ML, Kawchuk LM, Vaslin MFS, Correa RL, Waterhouse PM.

Viruses. 2017 Oct 10;9(10). pii: E294. doi: 10.3390/v9100294.

8.

Live Cell Imaging Reveals the Relocation of dsRNA Binding Proteins Upon Viral Infection.

Barton DA, Roovers EF, Gouil Q, da Fonseca GC, Reis RS, Jackson C, Overall RL, Fusaro AF, Waterhouse PM.

Mol Plant Microbe Interact. 2017 Jun;30(6):435-443. doi: 10.1094/MPMI-02-17-0035-R. Epub 2017 May 1.

9.

The widely used Nicotiana benthamiana 16c line has an unusual T-DNA integration pattern including a transposon sequence.

Philips JG, Naim F, Lorenc MT, Dudley KJ, Hellens RP, Waterhouse PM.

PLoS One. 2017 Feb 23;12(2):e0171311. doi: 10.1371/journal.pone.0171311. eCollection 2017.

10.

In-Plant Protection against Helicoverpa armigera by Production of Long hpRNA in Chloroplasts.

Bally J, McIntyre GJ, Doran RL, Lee K, Perez A, Jung H, Naim F, Larrinua IM, Narva KE, Waterhouse PM.

Front Plant Sci. 2016 Sep 29;7:1453. eCollection 2016.

11.

Proteomic Identification of Putative MicroRNA394 Target Genes in Arabidopsis thaliana Identifies Major Latex Protein Family Members Critical for Normal Development.

Litholdo CG Jr, Parker BL, Eamens AL, Larsen MR, Cordwell SJ, Waterhouse PM.

Mol Cell Proteomics. 2016 Jun;15(6):2033-47. doi: 10.1074/mcp.M115.053124. Epub 2016 Apr 11.

12.

Unusual RNA plant virus integration in the soybean genome leads to the production of small RNAs.

da Fonseca GC, de Oliveira LFV, de Morais GL, Abdelnor RV, Nepomuceno AL, Waterhouse PM, Farinelli L, Margis R.

Plant Sci. 2016 May;246:62-69. doi: 10.1016/j.plantsci.2016.01.011. Epub 2016 Feb 11.

PMID:
26993236
13.

Chimeric DCL1-Partnering Proteins Provide Insights into the MicroRNA Pathway.

Reis RS, Eamens AL, Roberts TH, Waterhouse PM.

Front Plant Sci. 2016 Jan 6;6:1201. doi: 10.3389/fpls.2015.01201. eCollection 2015.

14.

The Emerging World of Small ORFs.

Hellens RP, Brown CM, Chisnall MAW, Waterhouse PM, Macknight RC.

Trends Plant Sci. 2016 Apr;21(4):317-328. doi: 10.1016/j.tplants.2015.11.005. Epub 2015 Dec 10. Review.

PMID:
26684391
15.

Stable expression of silencing-suppressor protein enhances the performance and longevity of an engineered metabolic pathway.

Naim F, Shrestha P, Singh SP, Waterhouse PM, Wood CC.

Plant Biotechnol J. 2016 Jun;14(6):1418-26. doi: 10.1111/pbi.12506. Epub 2015 Dec 2.

16.

Missing Pieces in the Puzzle of Plant MicroRNAs.

Reis RS, Eamens AL, Waterhouse PM.

Trends Plant Sci. 2015 Nov;20(11):721-728. doi: 10.1016/j.tplants.2015.08.003. Epub 2015 Oct 3. Review.

PMID:
26442682
17.

MicroRNA Regulatory Mechanisms Play Different Roles in Arabidopsis.

Reis RS, Hart-Smith G, Eamens AL, Wilkins MR, Waterhouse PM.

J Proteome Res. 2015 Nov 6;14(11):4743-51. doi: 10.1021/acs.jproteome.5b00616. Epub 2015 Oct 1.

PMID:
26387911
18.

Plant biology: Coding in non-coding RNAs.

Waterhouse PM, Hellens RP.

Nature. 2015 Apr 2;520(7545):41-2. doi: 10.1038/nature14378. Epub 2015 Mar 25. No abstract available.

PMID:
25807488
19.

Mobile gene silencing in Arabidopsis is regulated by hydrogen peroxide.

Liang D, White RG, Waterhouse PM.

PeerJ. 2014 Dec 23;2:e701. doi: 10.7717/peerj.701. eCollection 2014.

20.

The extremophile Nicotiana benthamiana has traded viral defence for early vigour.

Bally J, Nakasugi K, Jia F, Jung H, Ho SY, Wong M, Paul CM, Naim F, Wood CC, Crowhurst RN, Hellens RP, Dale JL, Waterhouse PM.

Nat Plants. 2015 Nov 2;1:15165. doi: 10.1038/nplants.2015.165.

PMID:
27251536
21.

Gene regulation by translational inhibition is determined by Dicer partnering proteins.

Reis RS, Hart-Smith G, Eamens AL, Wilkins MR, Waterhouse PM.

Nat Plants. 2015 Feb 9;1:14027. doi: 10.1038/nplants.2014.27.

PMID:
27246880
22.

Complete genomic sequence of a Rubus yellow net virus isolate and detection of genome-wide pararetrovirus-derived small RNAs.

Kalischuk ML, Fusaro AF, Waterhouse PM, Pappu HR, Kawchuk LM.

Virus Res. 2013 Dec 26;178(2):306-13. doi: 10.1016/j.virusres.2013.09.026. Epub 2013 Sep 25.

23.

Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines.

Allen RS, Nakasugi K, Doran RL, Millar AA, Waterhouse PM.

Front Plant Sci. 2013 Sep 13;4:362. doi: 10.3389/fpls.2013.00362. eCollection 2013.

24.

The use of artificial microRNA technology to control gene expression in Arabidopsis thaliana.

Eamens AL, McHale M, Waterhouse PM.

Methods Mol Biol. 2014;1062:211-24. doi: 10.1007/978-1-62703-580-4_11.

PMID:
24057368
25.

A 22-nt artificial microRNA mediates widespread RNA silencing in Arabidopsis.

McHale M, Eamens AL, Finnegan EJ, Waterhouse PM.

Plant J. 2013 Nov;76(3):519-29. doi: 10.1111/tpj.12306. Epub 2013 Oct 3.

26.

De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana.

Nakasugi K, Crowhurst RN, Bally J, Wood CC, Hellens RP, Waterhouse PM.

PLoS One. 2013;8(3):e59534. doi: 10.1371/journal.pone.0059534. Epub 2013 Mar 28.

27.

Small RNA sequencing of Potato leafroll virus-infected plants reveals an additional subgenomic RNA encoding a sequence-specific RNA-binding protein.

Hwang YT, Kalischuk M, Fusaro AF, Waterhouse PM, Kawchuk L.

Virology. 2013 Apr 10;438(2):61-9. doi: 10.1016/j.virol.2012.12.012. Epub 2013 Feb 21.

28.

Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets.

Loss-Morais G, Waterhouse PM, Margis R.

Biol Direct. 2013 Feb 12;8:6. doi: 10.1186/1745-6150-8-6.

29.

Advanced engineering of lipid metabolism in Nicotiana benthamiana using a draft genome and the V2 viral silencing-suppressor protein.

Naim F, Nakasugi K, Crowhurst RN, Hilario E, Zwart AB, Hellens RP, Taylor JM, Waterhouse PM, Wood CC.

PLoS One. 2012;7(12):e52717. doi: 10.1371/journal.pone.0052717. Epub 2012 Dec 26.

30.

C. elegans RNA-dependent RNA polymerases rrf-1 and ego-1 silence Drosophila transgenes by differing mechanisms.

Duan G, Saint RB, Helliwell CA, Behm CA, Wang MB, Waterhouse PM, Gordon KH.

Cell Mol Life Sci. 2013 Apr;70(8):1469-81. doi: 10.1007/s00018-012-1218-8. Epub 2012 Dec 8.

PMID:
23224429
31.

DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana.

Eamens AL, Wook Kim K, Waterhouse PM.

Plant Signal Behav. 2012 Oct 1;7(10):1224-9. doi: 10.4161/psb.21518. Epub 2012 Aug 20.

32.

Isolation and analysis of small RNAs from virus-infected plants.

Curtin SJ, Zsögön A, Watson JM, Waterhouse PM.

Methods Mol Biol. 2012;894:173-89. doi: 10.1007/978-1-61779-882-5_12.

PMID:
22678580
33.

Modeling antiviral resistance in plants.

Anderssen RS, Waterhouse PM.

Methods Mol Biol. 2012;894:139-54. doi: 10.1007/978-1-61779-882-5_10.

PMID:
22678578
34.

Gene silencing in Arabidopsis spreads from the root to the shoot, through a gating barrier, by template-dependent, nonvascular, cell-to-cell movement.

Liang D, White RG, Waterhouse PM.

Plant Physiol. 2012 Jul;159(3):984-1000. doi: 10.1104/pp.112.197129. Epub 2012 May 11.

35.

DRB2 is required for microRNA biogenesis in Arabidopsis thaliana.

Eamens AL, Kim KW, Curtin SJ, Waterhouse PM.

PLoS One. 2012;7(4):e35933. doi: 10.1371/journal.pone.0035933. Epub 2012 Apr 24.

36.

The Enamovirus P0 protein is a silencing suppressor which inhibits local and systemic RNA silencing through AGO1 degradation.

Fusaro AF, Correa RL, Nakasugi K, Jackson C, Kawchuk L, Vaslin MF, Waterhouse PM.

Virology. 2012 May 10;426(2):178-87. doi: 10.1016/j.virol.2012.01.026. Epub 2012 Feb 22.

37.

Vectors and methods for hairpin RNA and artificial microRNA-mediated gene silencing in plants.

Eamens AL, Waterhouse PM.

Methods Mol Biol. 2011;701:179-97. doi: 10.1007/978-1-61737-957-4_10.

PMID:
21181531
38.

Efficient silencing of endogenous microRNAs using artificial microRNAs in Arabidopsis thaliana.

Eamens AL, Agius C, Smith NA, Waterhouse PM, Wang MB.

Mol Plant. 2011 Jan;4(1):157-70. doi: 10.1093/mp/ssq061. Epub 2010 Oct 13.

39.

Rapid match-searching for gene silencing assessment.

Horn ME, Waterhouse PM.

Bioinformatics. 2010 Aug 15;26(16):1932-7. doi: 10.1093/bioinformatics/btq318. Epub 2010 Jul 2.

PMID:
20601440
40.

Expression of Caenorhabditis elegans RNA-directed RNA polymerase in transgenic Drosophila melanogaster does not affect morphological development.

Duan G, Saint RB, Helliwell CA, Behm CA, Waterhouse PM, Gordon KH.

Transgenic Res. 2010 Dec;19(6):1121-8. doi: 10.1007/s11248-010-9372-y. Epub 2010 Feb 6.

PMID:
20140643
41.

The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Eamens AL, Smith NA, Curtin SJ, Wang MB, Waterhouse PM.

RNA. 2009 Dec;15(12):2219-35. doi: 10.1261/rna.1646909. Epub 2009 Oct 27.

42.

miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2.

Pase L, Layton JE, Kloosterman WP, Carradice D, Waterhouse PM, Lieschke GJ.

Blood. 2009 Feb 19;113(8):1794-804. doi: 10.1182/blood-2008-05-155812. Epub 2008 Oct 10.

43.

The roles of plant dsRNA-binding proteins in RNAi-like pathways.

Curtin SJ, Watson JM, Smith NA, Eamens AL, Blanchard CL, Waterhouse PM.

FEBS Lett. 2008 Aug 6;582(18):2753-60. doi: 10.1016/j.febslet.2008.07.004. Epub 2008 Jul 14.

44.

RNA silencing in plants: yesterday, today, and tomorrow.

Eamens A, Wang MB, Smith NA, Waterhouse PM.

Plant Physiol. 2008 Jun;147(2):456-68. doi: 10.1104/pp.108.117275. Review. No abstract available.

45.

Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants.

Wang MB, Helliwell CA, Wu LM, Waterhouse PM, Peacock WJ, Dennis ES.

RNA. 2008 May;14(5):903-13. doi: 10.1261/rna.760908. Epub 2008 Mar 26.

46.

RNAi for insect-proof plants.

Gordon KH, Waterhouse PM.

Nat Biotechnol. 2007 Nov;25(11):1231-2. No abstract available.

PMID:
17989682
47.

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis.

Brosnan CA, Mitter N, Christie M, Smith NA, Waterhouse PM, Carroll BJ.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14741-6. Epub 2007 Sep 4.

48.

Cloning and characterization of microRNAs from Brassica napus.

Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL.

FEBS Lett. 2007 Aug 7;581(20):3848-56. Epub 2007 Jul 16.

49.

RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway.

Fusaro AF, Matthew L, Smith NA, Curtin SJ, Dedic-Hagan J, Ellacott GA, Watson JM, Wang MB, Brosnan C, Carroll BJ, Waterhouse PM.

EMBO Rep. 2006 Nov;7(11):1168-75. Epub 2006 Oct 13.

50.

Small RNA viruses of insects: expression in plants and RNA silencing.

Gordon KH, Waterhouse PM.

Adv Virus Res. 2006;68:459-502. Review.

PMID:
16997020

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