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Items: 1 to 50 of 55

1.

Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport.

Shima T, Morikawa M, Kaneshiro J, Kambara T, Kamimura S, Yagi T, Iwamoto H, Uemura S, Shigematsu H, Shirouzu M, Ichimura T, Watanabe TM, Nitta R, Okada Y, Hirokawa N.

J Cell Biol. 2018 Dec 3;217(12):4164-4183. doi: 10.1083/jcb.201711178. Epub 2018 Oct 8.

PMID:
30297389
2.

Raman spectral signature reflects transcriptomic features of antibiotic resistance in Escherichia coli.

Germond A, Ichimura T, Horinouchi T, Fujita H, Furusawa C, Watanabe TM.

Commun Biol. 2018 Jul 2;1:85. doi: 10.1038/s42003-018-0093-8. eCollection 2018.

3.

Single cell analysis reveals a biophysical aspect of collective cell-state transition in embryonic stem cell differentiation.

Okamoto K, Germond A, Fujita H, Furusawa C, Okada Y, Watanabe TM.

Sci Rep. 2018 Aug 10;8(1):11965. doi: 10.1038/s41598-018-30461-2.

4.

Cell type discrimination based on image features of molecular component distribution.

Germond A, Ichimura T, Chiu LD, Fujita K, Watanabe TM, Fujita H.

Sci Rep. 2018 Aug 6;8(1):11726. doi: 10.1038/s41598-018-30276-1.

5.

Validation of Common Housekeeping Genes as Reference for qPCR Gene Expression Analysis During iPS Reprogramming Process.

Panina Y, Germond A, Masui S, Watanabe TM.

Sci Rep. 2018 Jun 7;8(1):8716. doi: 10.1038/s41598-018-26707-8.

6.

Myosin X is recruited to nascent focal adhesions at the leading edge and induces multi-cycle filopodial elongation.

He K, Sakai T, Tsukasaki Y, Watanabe TM, Ikebe M.

Sci Rep. 2017 Oct 20;7(1):13685. doi: 10.1038/s41598-017-06147-6.

7.

The use of a genetically encoded molecular crowding sensor in various biological phenomena.

Machiyama H, Morikawa TJ, Okamoto K, Watanabe TM, Fujita H.

Biophys Physicobiol. 2017 Aug 19;14:119-125. doi: 10.2142/biophysico.14.0_119. eCollection 2017.

8.

In vivo analysis of protein crowding within the nuclear pore complex in interphase and mitosis.

Konishi HA, Asai S, Watanabe TM, Yoshimura SH.

Sci Rep. 2017 Jul 18;7(1):5709. doi: 10.1038/s41598-017-05959-w.

9.

Raman spectroscopy as a tool for ecology and evolution.

Germond A, Kumar V, Ichimura T, Moreau J, Furusawa C, Fujita H, Watanabe TM.

J R Soc Interface. 2017 Jun;14(131). pii: 20170174. doi: 10.1098/rsif.2017.0174. Review.

10.

A novel c-Src recruitment pathway from the cytosol to focal adhesions.

Machiyama H, Yamaguchi T, Watanabe TM, Fujita H.

FEBS Lett. 2017 Jul;591(13):1940-1946. doi: 10.1002/1873-3468.12696. Epub 2017 Jun 10.

11.

Design and development of genetically encoded fluorescent sensors to monitor intracellular chemical and physical parameters.

Germond A, Fujita H, Ichimura T, Watanabe TM.

Biophys Rev. 2016 Jun;8(2):121-138. doi: 10.1007/s12551-016-0195-9. Epub 2016 Apr 29. Review.

12.

Human myosin VIIa is a very slow processive motor protein on various cellular actin structures.

Sato O, Komatsu S, Sakai T, Tsukasaki Y, Tanaka R, Mizutani T, Watanabe TM, Ikebe R, Ikebe M.

J Biol Chem. 2017 Jun 30;292(26):10950-10960. doi: 10.1074/jbc.M116.765966. Epub 2017 May 15.

13.

Activated full-length myosin-X moves processively on filopodia with large steps toward diverse two-dimensional directions.

Sato O, Jung HS, Komatsu S, Tsukasaki Y, Watanabe TM, Homma K, Ikebe M.

Sci Rep. 2017 Mar 13;7:44237. doi: 10.1038/srep44237.

14.

Non-label immune cell state prediction using Raman spectroscopy.

Ichimura T, Chiu LD, Fujita K, Machiyama H, Yamaguchi T, Watanabe TM, Fujita H.

Sci Rep. 2016 Nov 23;6:37562. doi: 10.1038/srep37562.

15.

Simultaneous nano-tracking of multiple motor proteins via spectral discrimination of quantum dots.

Kakizuka T, Ikezaki K, Kaneshiro J, Fujita H, Watanabe TM, Ichimura T.

Biomed Opt Express. 2016 Jun 2;7(7):2475-93. doi: 10.1364/BOE.7.002475. eCollection 2016 Jul 1.

16.

Full control of polarization state with a pair of electro-optic modulators for polarization-resolved optical microscopy: erratum.

Kaneshiro J, Watanabe TM, Fujita H, Ichimura T.

Appl Opt. 2016 May 20;55(15):4192. doi: 10.1364/AO.55.004192.

PMID:
27411149
17.

Dependence of fluorescent protein brightness on protein concentration in solution and enhancement of it.

Morikawa TJ, Fujita H, Kitamura A, Horio T, Yamamoto J, Kinjo M, Sasaki A, Machiyama H, Yoshizawa K, Ichimura T, Imada K, Nagai T, Watanabe TM.

Sci Rep. 2016 Mar 9;6:22342. doi: 10.1038/srep22342.

18.

Full control of polarization state with a pair of electro-optic modulators for polarization-resolved optical microscopy.

Kaneshiro J, Watanabe TM, Fujita H, Ichimura T.

Appl Opt. 2016 Feb 10;55(5):1082-9. doi: 10.1364/AO.55.001082.

PMID:
26906380
19.

Predictive diagnosis of the risk of breast cancer recurrence after surgery by single-particle quantum dot imaging.

Gonda K, Miyashita M, Higuchi H, Tada H, Watanabe TM, Watanabe M, Ishida T, Ohuchi N.

Sci Rep. 2015 Sep 22;5:14322. doi: 10.1038/srep14322.

20.

SH3 domain of c-Src governs its dynamics at focal adhesions and the cell membrane.

Machiyama H, Yamaguchi T, Sawada Y, Watanabe TM, Fujita H.

FEBS J. 2015 Oct;282(20):4034-55. doi: 10.1111/febs.13404. Epub 2015 Sep 11.

21.

Visualizing the appearance and disappearance of the attractor of differentiation using Raman spectral imaging.

Ichimura T, Chiu LD, Fujita K, Machiyama H, Kawata S, Watanabe TM, Fujita H.

Sci Rep. 2015 Jun 16;5:11358. doi: 10.1038/srep11358.

22.

Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging.

Takai A, Nakano M, Saito K, Haruno R, Watanabe TM, Ohyanagi T, Jin T, Okada Y, Nagai T.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4352-6. doi: 10.1073/pnas.1418468112. Epub 2015 Mar 23.

23.

Gene dynamics of core transcription factors for pluripotency in embryonic stem cells.

David BG, Okamoto K, Kakizuka T, Ichimura T, Watanabe TM, Fujita H.

J Biosci Bioeng. 2015 Apr;119(4):406-9. doi: 10.1016/j.jbiosc.2014.09.011. Epub 2014 Nov 3.

PMID:
25441442
24.

Nano-scale measurement of biomolecules by optical microscopy and semiconductor nanoparticles.

Ichimura T, Jin T, Fujita H, Higuchi H, Watanabe TM.

Front Physiol. 2014 Jul 29;5:273. doi: 10.3389/fphys.2014.00273. eCollection 2014. Review.

25.

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Susaki EA, Tainaka K, Perrin D, Kishino F, Tawara T, Watanabe TM, Yokoyama C, Onoe H, Eguchi M, Yamaguchi S, Abe T, Kiyonari H, Shimizu Y, Miyawaki A, Yokota H, Ueda HR.

Cell. 2014 Apr 24;157(3):726-39. doi: 10.1016/j.cell.2014.03.042. Epub 2014 Apr 17.

26.

Visualizing cell state transition using Raman spectroscopy.

Ichimura T, Chiu LD, Fujita K, Kawata S, Watanabe TM, Yanagida T, Fujita H.

PLoS One. 2014 Jan 7;9(1):e84478. doi: 10.1371/journal.pone.0084478. eCollection 2014.

27.

Culturing of mouse and human cells on soft substrates promote the expression of stem cell markers.

Higuchi S, Watanabe TM, Kawauchi K, Ichimura T, Fujita H.

J Biosci Bioeng. 2014 Jun;117(6):749-55. doi: 10.1016/j.jbiosc.2013.11.011. Epub 2013 Dec 17.

PMID:
24360205
28.

Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.

Watanabe TM, Imada K, Yoshizawa K, Nishiyama M, Kato C, Abe F, Morikawa TJ, Kinoshita M, Fujita H, Yanagida T.

PLoS One. 2013 Aug 27;8(8):e73212. doi: 10.1371/journal.pone.0073212. eCollection 2013.

29.

Four-dimensional spatial nanometry of single particles in living cells using polarized quantum rods.

Watanabe TM, Fujii F, Jin T, Umemoto E, Miyasaka M, Fujita H, Yanagida T.

Biophys J. 2013 Aug 6;105(3):555-64. doi: 10.1016/j.bpj.2013.07.001.

30.

Rab6a releases LIS1 from a dynein idling complex and activates dynein for retrograde movement.

Yamada M, Kumamoto K, Mikuni S, Arai Y, Kinjo M, Nagai T, Tsukasaki Y, Watanabe TM, Fukui M, Jin M, Toba S, Hirotsune S.

Nat Commun. 2013;4:2033. doi: 10.1038/ncomms3033.

PMID:
23783758
31.

Improving spinning disk confocal microscopy by preventing pinhole cross-talk for intravital imaging.

Shimozawa T, Yamagata K, Kondo T, Hayashi S, Shitamukai A, Konno D, Matsuzaki F, Takayama J, Onami S, Nakayama H, Kosugi Y, Watanabe TM, Fujita K, Mimori-Kiyosue Y.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3399-404. doi: 10.1073/pnas.1216696110. Epub 2013 Feb 11. Erratum in: Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6240.

32.

Distinct modulated pupil function system for real-time imaging of living cells.

Watanabe TM, Tsukasaki Y, Fujita H, Ichimura T, Saitoh T, Akira S, Yanagida T.

PLoS One. 2012;7(9):e44028. doi: 10.1371/journal.pone.0044028. Epub 2012 Sep 4.

33.

Multilayered, core/shell nanoprobes based on magnetic ferric oxide particles and quantum dots for multimodality imaging of breast cancer tumors.

Ma Q, Nakane Y, Mori Y, Hasegawa M, Yoshioka Y, Watanabe TM, Gonda K, Ohuchi N, Jin T.

Biomaterials. 2012 Nov;33(33):8486-94. doi: 10.1016/j.biomaterials.2012.07.051. Epub 2012 Aug 17.

PMID:
22906608
34.

Atg9 vesicles are an important membrane source during early steps of autophagosome formation.

Yamamoto H, Kakuta S, Watanabe TM, Kitamura A, Sekito T, Kondo-Kakuta C, Ichikawa R, Kinjo M, Ohsumi Y.

J Cell Biol. 2012 Jul 23;198(2):219-33. doi: 10.1083/jcb.201202061.

35.

Engineering strain-sensitive yellow fluorescent protein.

Ichimura T, Fujita H, Yoshizawa K, Watanabe TM.

Chem Commun (Camb). 2012 Aug 14;48(63):7871-3. doi: 10.1039/c2cc32541a. Epub 2012 Jul 2.

PMID:
22751284
36.

Chromatin plasticity as a differentiation index during muscle differentiation of C2C12 myoblasts.

Watanabe TM, Higuchi S, Kawauchi K, Tsukasaki Y, Ichimura T, Fujita H.

Biochem Biophys Res Commun. 2012 Feb 24;418(4):742-7. doi: 10.1016/j.bbrc.2012.01.091. Epub 2012 Jan 28.

PMID:
22306010
37.

Real-time nanoscopy by using blinking enhanced quantum dots.

Watanabe TM, Fukui S, Jin T, Fujii F, Yanagida T.

Biophys J. 2010 Oct 6;99(7):L50-2. doi: 10.1016/j.bpj.2010.07.036.

38.

Antibody-protein A conjugated quantum dots for multiplexed imaging of surface receptors in living cells.

Jin T, Tiwari DK, Tanaka S, Inouye Y, Yoshizawa K, Watanabe TM.

Mol Biosyst. 2010 Nov;6(11):2325-31. doi: 10.1039/c0mb00056f. Epub 2010 Sep 10.

PMID:
20835432
39.

Mechanical characterization of one-headed myosin-V using optical tweezers.

Watanabe TM, Iwane AH, Tanaka H, Ikebe M, Yanagida T.

PLoS One. 2010 Aug 18;5(8):e12224. doi: 10.1371/journal.pone.0012224.

40.

Identification of three distinct functional sites of insulin-mediated GLUT4 trafficking in adipocytes using quantitative single molecule imaging.

Fujita H, Hatakeyama H, Watanabe TM, Sato M, Higuchi H, Kanzaki M.

Mol Biol Cell. 2010 Aug 1;21(15):2721-31. doi: 10.1091/mbc.E10-01-0029. Epub 2010 Jun 2.

41.

Single molecular observation of self-regulated kinesin motility.

Watanabe TM, Yanagida T, Iwane AH.

Biochemistry. 2010 Jun 8;49(22):4654-61. doi: 10.1021/bi9021582.

42.

Myosin-X induces filopodia by multiple elongation mechanism.

Watanabe TM, Tokuo H, Gonda K, Higuchi H, Ikebe M.

J Biol Chem. 2010 Jun 18;285(25):19605-14. doi: 10.1074/jbc.M109.093864. Epub 2010 Apr 13.

43.

In vivo nano-imaging of membrane dynamics in metastatic tumor cells using quantum dots.

Gonda K, Watanabe TM, Ohuchi N, Higuchi H.

J Biol Chem. 2010 Jan 22;285(4):2750-7. doi: 10.1074/jbc.M109.075374. Epub 2009 Nov 16.

44.

Anterior ciliary circulation from the horizontal rectus muscles.

Johnson MS, Christiansen SP, Rath PP, Watanabe TM, Merten G, Bothun ED, Anderson JS.

Strabismus. 2009 Jan-Mar;17(1):45-8. doi: 10.1080/09273970802678180.

PMID:
19301194
45.

Synthesis and Characterization of Anti-HER2 Antibody Conjugated CdSe/CdZnS Quantum Dots for Fluorescence Imaging of Breast Cancer Cells.

Tiwari DK, Tanaka S, Inouye Y, Yoshizawa K, Watanabe TM, Jin T.

Sensors (Basel). 2009;9(11):9332-64. doi: 10.3390/s91109332. Epub 2009 Nov 19.

46.

Human myosin Vc is a low duty ratio nonprocessive motor.

Watanabe S, Watanabe TM, Sato O, Awata J, Homma K, Umeki N, Higuchi H, Ikebe R, Ikebe M.

J Biol Chem. 2008 Apr 18;283(16):10581-92. Epub 2007 Dec 12.

47.

Three-dimensional nanometry of vesicle transport in living cells using dual-focus imaging optics.

Watanabe TM, Sato T, Gonda K, Higuchi H.

Biochem Biophys Res Commun. 2007 Jul 20;359(1):1-7. Epub 2007 May 4.

PMID:
17512495
48.

Stepwise movements in vesicle transport of HER2 by motor proteins in living cells.

Watanabe TM, Higuchi H.

Biophys J. 2007 Jun 1;92(11):4109-20. Epub 2007 Mar 16.

49.

Input-output relationship in galvanotactic response of Dictyostelium cells.

Sato MJ, Ueda M, Takagi H, Watanabe TM, Yanagida T, Ueda M.

Biosystems. 2007 Apr;88(3):261-72. Epub 2006 Nov 10.

PMID:
17184899
50.

Reduction in nonfluorescence state of quantum dots on an immunofluorescence staining.

Li-Shishido S, Watanabe TM, Tada H, Higuchi H, Ohuchi N.

Biochem Biophys Res Commun. 2006 Dec 8;351(1):7-13. Epub 2006 Oct 9.

PMID:
17055452

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