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Items: 1 to 50 of 52

1.

PAT - Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3D Micrographs.

Skibbe H, Reisert M, Nakae K, Watakabe A, Hata J, Mizukami H, Okano H, Yamamori T, Ishii S.

IEEE Trans Med Imaging. 2018 Jul 13. doi: 10.1109/TMI.2018.2855736. [Epub ahead of print]

PMID:
30010551
2.

Cortical networks of the mouse brain elaborate within the gray matter.

Watakabe A, Hirokawa J.

Brain Struct Funct. 2018 Jul 9. doi: 10.1007/s00429-018-1710-5. [Epub ahead of print]

PMID:
29987506
3.

Two-photon imaging of neuronal activity in motor cortex of marmosets during upper-limb movement tasks.

Ebina T, Masamizu Y, Tanaka YR, Watakabe A, Hirakawa R, Hirayama Y, Hira R, Terada SI, Koketsu D, Hikosaka K, Mizukami H, Nambu A, Sasaki E, Yamamori T, Matsuzaki M.

Nat Commun. 2018 May 14;9(1):1879. doi: 10.1038/s41467-018-04286-6.

4.

Single-cell bioluminescence imaging of deep tissue in freely moving animals.

Iwano S, Sugiyama M, Hama H, Watakabe A, Hasegawa N, Kuchimaru T, Tanaka KZ, Takahashi M, Ishida Y, Hata J, Shimozono S, Namiki K, Fukano T, Kiyama M, Okano H, Kizaka-Kondoh S, McHugh TJ, Yamamori T, Hioki H, Maki S, Miyawaki A.

Science. 2018 Feb 23;359(6378):935-939. doi: 10.1126/science.aaq1067.

PMID:
29472486
5.

Silencing of FUS in the common marmoset (Callithrix jacchus) brain via stereotaxic injection of an adeno-associated virus encoding shRNA.

Endo K, Ishigaki S, Masamizu Y, Fujioka Y, Watakabe A, Yamamori T, Hatanaka N, Nambu A, Okado H, Katsuno M, Watanabe H, Matsuzaki M, Sobue G.

Neurosci Res. 2018 May;130:56-64. doi: 10.1016/j.neures.2017.08.006. Epub 2017 Aug 24.

PMID:
28842245
6.

3D reconstruction of brain section images for creating axonal projection maps in marmosets.

Abe H, Tani T, Mashiko H, Kitamura N, Miyakawa N, Mimura K, Sakai K, Suzuki W, Kurotani T, Mizukami H, Watakabe A, Yamamori T, Ichinohe N.

J Neurosci Methods. 2017 Jul 15;286:102-113. doi: 10.1016/j.jneumeth.2017.04.016. Epub 2017 May 31.

PMID:
28577985
7.

Distinct roles for primate caudate dopamine D1 and D2 receptors in visual discrimination learning revealed using shRNA knockdown.

Takaji M, Takemoto A, Yokoyama C, Watakabe A, Mizukami H, Ozawa K, Onoe H, Nakamura K, Yamamori T.

Sci Rep. 2016 Nov 2;6:35809. doi: 10.1038/srep35809.

8.

Application of viral vectors to the study of neural connectivities and neural circuits in the marmoset brain.

Watakabe A, Sadakane O, Hata K, Ohtsuka M, Takaji M, Yamamori T.

Dev Neurobiol. 2017 Mar;77(3):354-372. doi: 10.1002/dneu.22459. Epub 2016 Oct 26. Review.

9.

Distribution and Structure of Synapses on Medial Vestibular Nuclear Neurons Targeted by Cerebellar Flocculus Purkinje Cells and Vestibular Nerve in Mice: Light and Electron Microscopy Studies.

Matsuno H, Kudoh M, Watakabe A, Yamamori T, Shigemoto R, Nagao S.

PLoS One. 2016 Oct 6;11(10):e0164037. doi: 10.1371/journal.pone.0164037. eCollection 2016.

10.

In situ hybridization analyses of claustrum-enriched genes in marmosets.

Watakabe A.

J Comp Neurol. 2017 Apr 15;525(6):1442-1458. doi: 10.1002/cne.24021. Epub 2016 May 6.

PMID:
27098836
11.

Long-Term Two-Photon Calcium Imaging of Neuronal Populations with Subcellular Resolution in Adult Non-human Primates.

Sadakane O, Masamizu Y, Watakabe A, Terada S, Ohtsuka M, Takaji M, Mizukami H, Ozawa K, Kawasaki H, Matsuzaki M, Yamamori T.

Cell Rep. 2015 Dec 1;13(9):1989-99. doi: 10.1016/j.celrep.2015.10.050. Epub 2015 Nov 19.

12.

In Vivo Two-Photon Imaging of Dendritic Spines in Marmoset Neocortex

Sadakane O, Watakabe A, Ohtsuka M, Takaji M, Sasaki T, Kasai M, Isa T, Kato G, Nabekura J, Mizukami H, Ozawa K, Kawasaki H, Yamamori T.

eNeuro. 2015 Sep 17;2(4). pii: ENEURO.0019-15.2015. doi: 10.1523/ENEURO.0019-15.2015. eCollection 2015 Jul-Aug.

13.

Simultaneous visualization of extrinsic and intrinsic axon collaterals in Golgi-like detail for mouse corticothalamic and corticocortical cells: a double viral infection method.

Watakabe A, Takaji M, Kato S, Kobayashi K, Mizukami H, Ozawa K, Ohsawa S, Matsui R, Watanabe D, Yamamori T.

Front Neural Circuits. 2014 Sep 17;8:110. doi: 10.3389/fncir.2014.00110. eCollection 2014.

14.

Comparative analyses of adeno-associated viral vector serotypes 1, 2, 5, 8 and 9 in marmoset, mouse and macaque cerebral cortex.

Watakabe A, Ohtsuka M, Kinoshita M, Takaji M, Isa K, Mizukami H, Ozawa K, Isa T, Yamamori T.

Neurosci Res. 2015 Apr;93:144-57. doi: 10.1016/j.neures.2014.09.002. Epub 2014 Sep 18.

15.

Characterization of claustral neurons by comparative gene expression profiling and dye-injection analyses.

Watakabe A, Ohsawa S, Ichinohe N, Rockland KS, Yamamori T.

Front Syst Neurosci. 2014 May 23;8:98. doi: 10.3389/fnsys.2014.00098. eCollection 2014.

16.

mRNA expression profile of serotonin receptor subtypes and distribution of serotonergic terminations in marmoset brain.

Shukla R, Watakabe A, Yamamori T.

Front Neural Circuits. 2014 May 19;8:52. doi: 10.3389/fncir.2014.00052. eCollection 2014.

17.

DNA methylation and methyl-binding proteins control differential gene expression in distinct cortical areas of macaque monkey.

Hata K, Mizukami H, Sadakane O, Watakabe A, Ohtsuka M, Takaji M, Kinoshita M, Isa T, Ozawa K, Yamamori T.

J Neurosci. 2013 Dec 11;33(50):19704-14. doi: 10.1523/JNEUROSCI.2355-13.2013.

18.

Assessment of reasons for referral and activities of hospital palliative care teams using a standard format: a multicenter 1000 case description.

Sasahara T, Watakabe A, Aruga E, Fujimoto K, Higashi K, Hisahara K, Hori N, Ikenaga M, Izawa T, Kanai Y, Kinoshita H, Kobayakawa M, Kobayashi K, Kohara H, Namba M, Nozaki-Taguchi N, Osaka I, Saito M, Sekine R, Shinjo T, Suga A, Tokuno Y, Yamamoto R, Yomiya K, Morita T.

J Pain Symptom Manage. 2014 Mar;47(3):579-587.e6. doi: 10.1016/j.jpainsymman.2013.04.009. Epub 2013 Aug 21.

PMID:
23972575
19.

Monocular inhibition reveals temporal and spatial changes in gene expression in the primary visual cortex of marmoset.

Nakagami Y, Watakabe A, Yamamori T.

Front Neural Circuits. 2013 Apr 9;7:43. doi: 10.3389/fncir.2013.00043. eCollection 2013.

20.

The determinants of patients in a palliative care unit being discharged home in Japan.

Amano K, Nishiuchi Y, Baba M, Kawasaki M, Nakajima S, Wakayama H, Watakabe A, Kunimoto H, Morita T.

Am J Hosp Palliat Care. 2014 May;31(3):244-6. doi: 10.1177/1049909113484384. Epub 2013 Apr 2.

PMID:
23552663
21.

Visualization of cortical projection neurons with retrograde TET-off lentiviral vector.

Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T.

PLoS One. 2012;7(10):e46157. doi: 10.1371/journal.pone.0046157. Epub 2012 Oct 5.

22.

Genetic dissection of the circuit for hand dexterity in primates.

Kinoshita M, Matsui R, Kato S, Hasegawa T, Kasahara H, Isa K, Watakabe A, Yamamori T, Nishimura Y, Alstermark B, Watanabe D, Kobayashi K, Isa T.

Nature. 2012 Jul 12;487(7406):235-8. doi: 10.1038/nature11206.

PMID:
22722837
23.

Area-specific substratification of deep layer neurons in the rat cortex.

Watakabe A, Hirokawa J, Ichinohe N, Ohsawa S, Kaneko T, Rockland KS, Yamamori T.

J Comp Neurol. 2012 Nov 1;520(16):3553-73. doi: 10.1002/cne.23160.

PMID:
22678985
24.

Altered layer-specific gene expression in cortical samples from patients with temporal lobe epilepsy.

Rossini L, Moroni RF, Tassi L, Watakabe A, Yamamori T, Spreafico R, Garbelli R.

Epilepsia. 2011 Oct;52(10):1928-37. doi: 10.1111/j.1528-1167.2011.03246.x. Epub 2011 Aug 29.

25.

Fluorescent in situ hybridization technique for cell type identification and characterization in the central nervous system.

Watakabe A, Komatsu Y, Ohsawa S, Yamamori T.

Methods. 2010 Dec;52(4):367-74. doi: 10.1016/j.ymeth.2010.07.003. Epub 2010 Jul 14. Review.

PMID:
20637287
26.

Serotonin modulates fast-spiking interneuron and synchronous activity in the rat prefrontal cortex through 5-HT1A and 5-HT2A receptors.

Puig MV, Watakabe A, Ushimaru M, Yamamori T, Kawaguchi Y.

J Neurosci. 2010 Feb 10;30(6):2211-22. doi: 10.1523/JNEUROSCI.3335-09.2010.

27.

Prefrontal-enriched SLIT1 expression in Old World monkey cortex established during the postnatal development.

Sasaki T, Komatsu Y, Watakabe A, Sawada K, Yamamori T.

Cereb Cortex. 2010 Oct;20(10):2496-510. doi: 10.1093/cercor/bhp319. Epub 2010 Feb 1.

28.

Layer-specific genes reveal a rudimentary laminar pattern in human nodular heterotopia.

Garbelli R, Rossini L, Moroni RF, Watakabe A, Yamamori T, Tassi L, Bramerio M, Russo GL, Frassoni C, Spreafico R.

Neurology. 2009 Sep 8;73(10):746-53. doi: 10.1212/WNL.0b013e3181af3397. Epub 2009 Jun 17.

PMID:
19535771
29.

Paraneoplastic antigen-like 5 gene (PNMA5) is preferentially expressed in the association areas in a primate specific manner.

Takaji M, Komatsu Y, Watakabe A, Hashikawa T, Yamamori T.

Cereb Cortex. 2009 Dec;19(12):2865-79. doi: 10.1093/cercor/bhp062. Epub 2009 Apr 14.

30.

Expression of ErbB4 in substantia nigra dopamine neurons of monkeys and humans.

Zheng Y, Watakabe A, Takada M, Kakita A, Namba H, Takahashi H, Yamamori T, Nawa H.

Prog Neuropsychopharmacol Biol Psychiatry. 2009 Jun 15;33(4):701-6. doi: 10.1016/j.pnpbp.2009.03.021. Epub 2009 Mar 29.

PMID:
19336245
31.

Comparative molecular neuroanatomy of mammalian neocortex: what can gene expression tell us about areas and layers?

Watakabe A.

Dev Growth Differ. 2009 Apr;51(3):343-54. doi: 10.1111/j.1440-169X.2008.01085.x. Epub 2009 Feb 16. Review.

PMID:
19222526
32.

Expression of layer-specific markers in the adult neocortex of BCNU-Treated rat, a model of cortical dysplasia.

Moroni RF, Inverardi F, Regondi MC, Watakabe A, Yamamori T, Spreafico R, Frassoni C.

Neuroscience. 2009 Mar 17;159(2):682-91. doi: 10.1016/j.neuroscience.2008.12.064. Epub 2009 Jan 10.

PMID:
19174181
33.

Differential expression patterns of occ1-related genes in adult monkey visual cortex.

Takahata T, Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.

Cereb Cortex. 2009 Aug;19(8):1937-51. doi: 10.1093/cercor/bhn220. Epub 2008 Dec 10.

34.

Enriched expression of serotonin 1B and 2A receptor genes in macaque visual cortex and their bidirectional modulatory effects on neuronal responses.

Watakabe A, Komatsu Y, Sadakane O, Shimegi S, Takahata T, Higo N, Tochitani S, Hashikawa T, Naito T, Osaki H, Sakamoto H, Okamoto M, Ishikawa A, Hara S, Akasaki T, Sato H, Yamamori T.

Cereb Cortex. 2009 Aug;19(8):1915-28. doi: 10.1093/cercor/bhn219. Epub 2008 Dec 4.

35.

Analysis of area-specific expression patterns of RORbeta, ER81 and Nurr1 mRNAs in rat neocortex by double in situ hybridization and cortical box method.

Hirokawa J, Watakabe A, Ohsawa S, Yamamori T.

PLoS One. 2008 Sep 25;3(9):e3266. doi: 10.1371/journal.pone.0003266.

36.

Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation.

Lyckman AW, Horng S, Leamey CA, Tropea D, Watakabe A, Van Wart A, McCurry C, Yamamori T, Sur M.

Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9409-14. doi: 10.1073/pnas.0710172105. Epub 2008 Jul 7.

37.
38.

Comparative analysis of layer-specific genes in Mammalian neocortex.

Watakabe A, Ichinohe N, Ohsawa S, Hashikawa T, Komatsu Y, Rockland KS, Yamamori T.

Cereb Cortex. 2007 Aug;17(8):1918-33. Epub 2006 Oct 25.

PMID:
17065549
39.

Binding and complementary expression patterns of semaphorin 3E and plexin D1 in the mature neocortices of mice and monkeys.

Watakabe A, Ohsawa S, Hashikawa T, Yamamori T.

J Comp Neurol. 2006 Nov 10;499(2):258-73.

PMID:
16977617
40.

Gene expression profiling of primate neocortex: molecular neuroanatomy of cortical areas.

Watakabe A, Komatsu Y, Nawa H, Yamamori T.

Genes Brain Behav. 2006;5 Suppl 1:38-43. Review.

41.

Activity-dependent expression of occ1 in excitatory neurons is a characteristic feature of the primate visual cortex.

Takahata T, Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.

Cereb Cortex. 2006 Jul;16(7):929-40. Epub 2005 Sep 8.

PMID:
16151175
42.

A voltage-gated potassium channel, Kv3.1b, is expressed by a subpopulation of large pyramidal neurons in layer 5 of the macaque monkey cortex.

Ichinohe N, Watakabe A, Miyashita T, Yamamori T, Hashikawa T, Rockland KS.

Neuroscience. 2004;129(1):179-85.

PMID:
15489040
43.

Retinol-binding protein gene is highly expressed in higher-order association areas of the primate neocortex.

Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.

Cereb Cortex. 2005 Jan;15(1):96-108. Epub 2004 Jun 24.

PMID:
15217901
44.

Similarity and variation in gene expression among human cerebral cortical subregions revealed by DNA macroarrays: technical consideration of RNA expression profiling from postmortem samples.

Watakabe A, Sugai T, Nakaya N, Wakabayashi K, Takahashi H, Yamamori T, Nawa H.

Brain Res Mol Brain Res. 2001 Mar 31;88(1-2):74-82.

PMID:
11295233
45.

Growth/differentiation factor 7 is preferentially expressed in the primary motor area of the monkey neocortex.

Watakabe A, Fujita H, Hayashi M, Yamamori T.

J Neurochem. 2001 Mar;76(5):1455-64. Erratum in: J Neurochem 2001 Jun;77(5):1422.

47.

N-tropomodulin: a novel isoform of tropomodulin identified as the major binding protein to brain tropomyosin.

Watakabe A, Kobayashi R, Helfman DM.

J Cell Sci. 1996 Sep;109 ( Pt 9):2299-310.

48.
49.

Polypurine sequences within a downstream exon function as a splicing enhancer.

Tanaka K, Watakabe A, Shimura Y.

Mol Cell Biol. 1994 Feb;14(2):1347-54.

50.

The role of exon sequences in splice site selection.

Watakabe A, Tanaka K, Shimura Y.

Genes Dev. 1993 Mar;7(3):407-18.

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