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Items: 37

1.

6S RNA, a Global Regulator of Transcription.

Wassarman KM.

Microbiol Spectr. 2018 May;6(3). doi: 10.1128/microbiolspec.RWR-0019-2018. Review.

2.

6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.

Chen J, Wassarman KM, Feng S, Leon K, Feklistov A, Winkelman JT, Li Z, Walz T, Campbell EA, Darst SA.

Mol Cell. 2017 Oct 19;68(2):388-397.e6. doi: 10.1016/j.molcel.2017.09.006. Epub 2017 Oct 5.

3.

Targeted mutagenesis of intergenic regions in the Neisseria gonorrhoeae gonococcal genetic island reveals multiple regulatory mechanisms controlling type IV secretion.

Ramsey ME, Bender T, Klimowicz AK, Hackett KT, Yamamoto A, Jolicoeur A, Callaghan MM, Wassarman KM, van der Does C, Dillard JP.

Mol Microbiol. 2015 Sep;97(6):1168-85. doi: 10.1111/mmi.13094. Epub 2015 Jul 17.

4.

NilD CRISPR RNA contributes to Xenorhabdus nematophila colonization of symbiotic host nematodes.

Veesenmeyer JL, Andersen AW, Lu X, Hussa EA, Murfin KE, Chaston JM, Dillman AR, Wassarman KM, Sternberg PW, Goodrich-Blair H.

Mol Microbiol. 2014 Sep;93(5):1026-42. doi: 10.1111/mmi.12715. Epub 2014 Aug 6.

5.

6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond.

Cavanagh AT, Wassarman KM.

Annu Rev Microbiol. 2014;68:45-60. doi: 10.1146/annurev-micro-092611-150135. Epub 2014 Apr 10. Review.

PMID:
24742053
6.

Global regulation of transcription by a small RNA: a quantitative view.

Nitzan M, Wassarman KM, Biham O, Margalit H.

Biophys J. 2014 Mar 4;106(5):1205-14. doi: 10.1016/j.bpj.2014.01.025.

7.

Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli.

Cabrera-Ostertag IJ, Cavanagh AT, Wassarman KM.

Nucleic Acids Res. 2013 Aug;41(15):7501-11. doi: 10.1093/nar/gkt517. Epub 2013 Jun 12.

8.

6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis.

Cavanagh AT, Wassarman KM.

J Bacteriol. 2013 May;195(9):2079-86. doi: 10.1128/JB.00050-13. Epub 2013 Mar 1.

9.

Native gel electrophoresis to study the binding and release of RNA polymerase by 6S RNA.

Wassarman KM.

Methods Mol Biol. 2012;905:259-71. doi: 10.1007/978-1-61779-949-5_17.

PMID:
22736010
10.

Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis.

Cavanagh AT, Sperger JM, Wassarman KM.

Nucleic Acids Res. 2012 Mar;40(5):2234-46. doi: 10.1093/nar/gkr1003. Epub 2011 Nov 18.

11.

Regulation by small RNAs in bacteria: expanding frontiers.

Storz G, Vogel J, Wassarman KM.

Mol Cell. 2011 Sep 16;43(6):880-91. doi: 10.1016/j.molcel.2011.08.022. Review.

12.

6S RNA regulation of relA alters ppGpp levels in early stationary phase.

Cavanagh AT, Chandrangsu P, Wassarman KM.

Microbiology. 2010 Dec;156(Pt 12):3791-800. doi: 10.1099/mic.0.043992-0. Epub 2010 Sep 9.

13.

Global approaches for finding small RNA and small open reading frame functions.

Wassarman KM, Kiley PJ.

J Bacteriol. 2010 Jan;192(1):26-8. doi: 10.1128/JB.01316-09. No abstract available.

14.

6S RNA binding to Esigma(70) requires a positively charged surface of sigma(70) region 4.2.

Klocko AD, Wassarman KM.

Mol Microbiol. 2009 Jul;73(2):152-64. doi: 10.1111/j.1365-2958.2009.06758.x. Epub 2009 Jun 16.

15.

Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70.

Cavanagh AT, Klocko AD, Liu X, Wassarman KM.

Mol Microbiol. 2008 Mar;67(6):1242-56. doi: 10.1111/j.1365-2958.2008.06117.x. Epub 2008 Jan 15.

16.

6S RNA: a regulator of transcription.

Wassarman KM.

Mol Microbiol. 2007 Sep;65(6):1425-31. Epub 2007 Aug 21. Review.

17.

6S RNA: a small RNA regulator of transcription.

Wassarman KM.

Curr Opin Microbiol. 2007 Apr;10(2):164-8. Epub 2007 Mar 23. Review.

PMID:
17383220
18.

Regulating bacterial transcription with small RNAs.

Storz G, Opdyke JA, Wassarman KM.

Cold Spring Harb Symp Quant Biol. 2006;71:269-73. Review.

PMID:
17381306
19.

Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.

Wassarman KM, Saecker RM.

Science. 2006 Dec 8;314(5805):1601-3.

20.

6S RNA regulation of pspF transcription leads to altered cell survival at high pH.

Trotochaud AE, Wassarman KM.

J Bacteriol. 2006 Jun;188(11):3936-43.

21.

An abundance of RNA regulators.

Storz G, Altuvia S, Wassarman KM.

Annu Rev Biochem. 2005;74:199-217. Review.

PMID:
15952886
22.

A highly conserved 6S RNA structure is required for regulation of transcription.

Trotochaud AE, Wassarman KM.

Nat Struct Mol Biol. 2005 Apr;12(4):313-9. Epub 2005 Mar 27.

PMID:
15793584
23.

RNA regulators of transcription.

Wassarman KM.

Nat Struct Mol Biol. 2004 Sep;11(9):803-4. No abstract available.

PMID:
15332076
24.

6S RNA function enhances long-term cell survival.

Trotochaud AE, Wassarman KM.

J Bacteriol. 2004 Aug;186(15):4978-85.

25.

Global analysis of small RNA and mRNA targets of Hfq.

Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S.

Mol Microbiol. 2003 Nov;50(4):1111-24.

26.

Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs.

Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, Wassarman KM.

Cold Spring Harb Symp Quant Biol. 2001;66:353-62. Review. No abstract available.

PMID:
12762038
27.
28.

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs.

Zhang A, Wassarman KM, Ortega J, Steven AC, Storz G.

Mol Cell. 2002 Jan;9(1):11-22.

29.

Identification of novel small RNAs using comparative genomics and microarrays.

Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S.

Genes Dev. 2001 Jul 1;15(13):1637-51.

30.

6S RNA regulates E. coli RNA polymerase activity.

Wassarman KM, Storz G.

Cell. 2000 Jun 9;101(6):613-23.

31.

Early neocortical regionalization in the absence of thalamic innervation.

Miyashita-Lin EM, Hevner R, Wassarman KM, Martinez S, Rubenstein JL.

Science. 1999 Aug 6;285(5429):906-9.

32.

Small RNAs in Escherichia coli.

Wassarman KM, Zhang A, Storz G.

Trends Microbiol. 1999 Jan;7(1):37-45. Review.

PMID:
10068996
33.

Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA.

Matsumoto K, Wassarman KM, Wolffe AP.

EMBO J. 1998 Apr 1;17(7):2107-21.

34.

Specification of the anterior hindbrain and establishment of a normal mid/hindbrain organizer is dependent on Gbx2 gene function.

Wassarman KM, Lewandoski M, Campbell K, Joyner AL, Rubenstein JL, Martinez S, Martin GR.

Development. 1997 Aug;124(15):2923-34.

35.
36.

Association with terminal exons in pre-mRNAs: a new role for the U1 snRNP?

Wassarman KM, Steitz JA.

Genes Dev. 1993 Apr;7(4):647-59.

37.

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