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Items: 30

1.

The genetic prehistory of the Andean highlands 7000 years BP though European contact.

Lindo J, Haas R, Hofman C, Apata M, Moraga M, Verdugo RA, Watson JT, Viviano Llave C, Witonsky D, Beall C, Warinner C, Novembre J, Aldenderfer M, Di Rienzo A.

Sci Adv. 2018 Nov 8;4(11):eaau4921. doi: 10.1126/sciadv.aau4921. eCollection 2018 Nov.

2.

Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe.

Jeong C, Wilkin S, Amgalantugs T, Bouwman AS, Taylor WTT, Hagan RW, Bromage S, Tsolmon S, Trachsel C, Grossmann J, Littleton J, Makarewicz CA, Krigbaum J, Burri M, Scott A, Davaasambuu G, Wright J, Irmer F, Myagmar E, Boivin N, Robbeets M, Rühli FJ, Krause J, Frohlich B, Hendy J, Warinner C.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11248-E11255. doi: 10.1073/pnas.1813608115. Epub 2018 Nov 5.

3.

Proteomic evidence of dietary sources in ancient dental calculus.

Hendy J, Warinner C, Bouwman A, Collins MJ, Fiddyment S, Fischer R, Hagan R, Hofman CA, Holst M, Chaves E, Klaus L, Larson G, Mackie M, McGrath K, Mundorff AZ, Radini A, Rao H, Trachsel C, Velsko IM, Speller CF.

Proc Biol Sci. 2018 Jul 18;285(1883). pii: 20180977. doi: 10.1098/rspb.2018.0977.

4.

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research.

Velsko IM, Frantz LAF, Herbig A, Larson G, Warinner C.

mSystems. 2018 Jul 17;3(4). pii: e00080-18. doi: 10.1128/mSystems.00080-18. eCollection 2018 Jul-Aug.

5.

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin.

Mann AE, Sabin S, Ziesemer K, Vågene ÅJ, Schroeder H, Ozga AT, Sankaranarayanan K, Hofman CA, Fellows Yates JA, Salazar-García DC, Frohlich B, Aldenderfer M, Hoogland M, Read C, Milner GR, Stone AC, Lewis CM Jr, Krause J, Hofman C, Bos KI, Warinner C.

Sci Rep. 2018 Jun 29;8(1):9822. doi: 10.1038/s41598-018-28091-9.

6.

Author Correction: A guide to ancient protein studies.

Hendy J, Welker F, Demarchi B, Speller C, Warinner C, Collins MJ.

Nat Ecol Evol. 2018 Jul;2(7):1190. doi: 10.1038/s41559-018-0590-7.

PMID:
29867101
7.

A guide to ancient protein studies.

Hendy J, Welker F, Demarchi B, Speller C, Warinner C, Collins MJ.

Nat Ecol Evol. 2018 May;2(5):791-799. doi: 10.1038/s41559-018-0510-x. Epub 2018 Mar 26. Review. Erratum in: Nat Ecol Evol. 2018 Jul;2(7):1190.

PMID:
29581591
8.

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico.

Vågene ÅJ, Herbig A, Campana MG, Robles García NM, Warinner C, Sabin S, Spyrou MA, Andrades Valtueña A, Huson D, Tuross N, Bos KI, Krause J.

Nat Ecol Evol. 2018 Mar;2(3):520-528. doi: 10.1038/s41559-017-0446-6. Epub 2018 Jan 15.

PMID:
29335577
9.
10.

Successful reconstruction of whole mitochondrial genomes from ancient Central America and Mexico.

Morales-Arce AY, Hofman CA, Duggan AT, Benfer AK, Katzenberg MA, McCafferty G, Warinner C.

Sci Rep. 2017 Dec 22;7(1):18100. doi: 10.1038/s41598-017-18356-0.

11.

The dental calculus metabolome in modern and historic samples.

Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K, Lewis CM Jr, Martinez JBR, Chaves E, Coon JJ, Larson G, Warinner C.

Metabolomics. 2017;13(11):134. doi: 10.1007/s11306-017-1270-3. Epub 2017 Oct 3.

12.

A Robust Framework for Microbial Archaeology.

Warinner C, Herbig A, Mann A, Fellows Yates JA, Weiß CL, Burbano HA, Orlando L, Krause J.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:321-356. doi: 10.1146/annurev-genom-091416-035526. Epub 2017 Apr 26. Review.

13.

Dental Calculus and the Evolution of the Human Oral Microbiome.

Warinner C.

J Calif Dent Assoc. 2016 Jul;44(7):411-20. Review.

PMID:
27514153
14.

Insights into human evolution from ancient and contemporary microbiome studies.

Schnorr SL, Sankaranarayanan K, Lewis CM Jr, Warinner C.

Curr Opin Genet Dev. 2016 Dec;41:14-26. doi: 10.1016/j.gde.2016.07.003. Epub 2016 Aug 6. Review.

15.

Oral microbiome diversity among Cheyenne and Arapaho individuals from Oklahoma.

Ozga AT, Sankaranarayanan K, Tito RY, Obregon-Tito AJ, Foster MW, Tallbull G, Spicer P, Warinner CG, Lewis CM Jr.

Am J Phys Anthropol. 2016 Oct;161(2):321-7. doi: 10.1002/ajpa.23033. Epub 2016 Jun 30.

PMID:
27357925
16.

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc.

Jeong C, Ozga AT, Witonsky DB, Malmström H, Edlund H, Hofman CA, Hagan RW, Jakobsson M, Lewis CM, Aldenderfer MS, Di Rienzo A, Warinner C.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7485-90. doi: 10.1073/pnas.1520844113. Epub 2016 Jun 20.

17.

Corrigendum: Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2016 Jun 2;6:27163. doi: 10.1038/srep27163. No abstract available.

18.

Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus.

Ozga AT, Nieves-Colón MA, Honap TP, Sankaranarayanan K, Hofman CA, Milner GR, Lewis CM Jr, Stone AC, Warinner C.

Am J Phys Anthropol. 2016 Jun;160(2):220-8. doi: 10.1002/ajpa.22960. Epub 2016 Mar 16.

19.

Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma.

Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, Gaffney PM, Jervis LL, Cox D, Stephens L, Foster M, Tallbull G, Spicer P, Lewis CM.

Curr Biol. 2015 Dec 21;25(24):3161-9. doi: 10.1016/j.cub.2015.10.060. Epub 2015 Dec 6.

20.

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2015 Nov 13;5:16498. doi: 10.1038/srep16498. Erratum in: Sci Rep. 2016 Jun 02;6:27163.

21.

Subsistence strategies in traditional societies distinguish gut microbiomes.

Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM.

Nat Commun. 2015 Mar 25;6:6505. doi: 10.1038/ncomms7505.

22.

Ancient human microbiomes.

Warinner C, Speller C, Collins MJ, Lewis CM Jr.

J Hum Evol. 2015 Feb;79:125-36. doi: 10.1016/j.jhevol.2014.10.016. Epub 2015 Jan 3.

23.

A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome.

Warinner C, Speller C, Collins MJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130376. doi: 10.1098/rstb.2013.0376. Review.

24.

Direct evidence of milk consumption from ancient human dental calculus.

Warinner C, Hendy J, Speller C, Cappellini E, Fischer R, Trachsel C, Arneborg J, Lynnerup N, Craig OE, Swallow DM, Fotakis A, Christensen RJ, Olsen JV, Liebert A, Montalva N, Fiddyment S, Charlton S, Mackie M, Canci A, Bouwman A, Rühli F, Gilbert MT, Collins MJ.

Sci Rep. 2014 Nov 27;4:7104. doi: 10.1038/srep07104.

25.

Post mortem DNA degradation of human tissue experimentally mummified in salt.

Shved N, Haas C, Papageorgopoulou C, Akguel G, Paulsen K, Bouwman A, Warinner C, Rühli F.

PLoS One. 2014 Oct 22;9(10):e110753. doi: 10.1371/journal.pone.0110753. eCollection 2014.

26.

A lack of crowding? Body size does not decrease with density for two behavior-manipulating parasites.

Weinersmith KL, Warinner CB, Tan V, Harris DJ, Mora AB, Kuris AM, Lafferty KD, Hechinger RF.

Integr Comp Biol. 2014 Jul;54(2):184-92. doi: 10.1093/icb/icu081. Epub 2014 Jun 15.

PMID:
24935987
27.

Pathogens and host immunity in the ancient human oral cavity.

Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM Jr, Collins MJ, Gilbert MT, Rühli F, Cappellini E.

Nat Genet. 2014 Apr;46(4):336-44. doi: 10.1038/ng.2906. Epub 2014 Feb 23.

28.

Ancient DNA analysis reveals high frequency of European lactase persistence allele (T-13910) in medieval central europe.

Krüttli A, Bouwman A, Akgül G, Della Casa P, Rühli F, Warinner C.

PLoS One. 2014 Jan 23;9(1):e86251. doi: 10.1371/journal.pone.0086251. eCollection 2014.

29.

Brief communication: tissue isotopic enrichment associated with growth depression in a pig: implications for archaeology and ecology.

Warinner C, Tuross N.

Am J Phys Anthropol. 2010 Mar;141(3):486-93. doi: 10.1002/ajpa.21222.

PMID:
20052664
30.

Organic oxygen and hydrogen isotopes in a porcine controlled dietary study.

Tuross N, Warinner C, Kirsanow K, Kester C.

Rapid Commun Mass Spectrom. 2008 Jun;22(11):1741-5. doi: 10.1002/rcm.3556.

PMID:
18446769

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