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Items: 47

1.

Oral transfer of chemical cues, growth proteins and hormones in social insects.

LeBoeuf AC, Waridel P, Brent CS, Gonçalves AN, Menin L, Ortiz D, Riba-Grognuz O, Koto A, Soares ZG, Privman E, Miska EA, Benton R, Keller L.

Elife. 2019 Aug 19;8. pii: e51082. doi: 10.7554/eLife.51082.

2.

Molecular evolution of juvenile hormone esterase-like proteins in a socially exchanged fluid.

LeBoeuf AC, Cohanim AB, Stoffel C, Brent CS, Waridel P, Privman E, Keller L, Benton R.

Sci Rep. 2018 Dec 13;8(1):17830. doi: 10.1038/s41598-018-36048-1.

3.

The conserved threonine-rich region of the HCF-1PRO repeat activates promiscuous OGT:UDP-GlcNAc glycosylation and proteolysis activities.

Kapuria V, Röhrig UF, Waridel P, Lammers F, Borodkin VS, van Aalten DMF, Zoete V, Herr W.

J Biol Chem. 2018 Nov 16;293(46):17754-17768. doi: 10.1074/jbc.RA118.004185. Epub 2018 Sep 17.

4.

A phosphorylation switch turns a positive regulator of phototropism into an inhibitor of the process.

Schumacher P, Demarsy E, Waridel P, Petrolati LA, Trevisan M, Fankhauser C.

Nat Commun. 2018 Jun 19;9(1):2403. doi: 10.1038/s41467-018-04752-1.

5.

Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins.

Debelyy MO, Waridel P, Quadroni M, Schneiter R, Conzelmann A.

PLoS One. 2017 Oct 26;12(10):e0186840. doi: 10.1371/journal.pone.0186840. eCollection 2017.

6.

MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications.

Martín-Campos T, Mylonas R, Masselot A, Waridel P, Petricevic T, Xenarios I, Quadroni M.

J Proteome Res. 2017 Aug 4;16(8):3092-3101. doi: 10.1021/acs.jproteome.7b00194. Epub 2017 Jul 6.

PMID:
28636386
7.

AoS28D, a proline-Xaa carboxypeptidase secreted by Aspergillus oryzae.

Salamin K, Eugster PJ, Jousson O, Waridel P, Grouzmann E, Monod M.

Appl Microbiol Biotechnol. 2017 May;101(10):4129-4137. doi: 10.1007/s00253-017-8186-8. Epub 2017 Feb 22.

PMID:
28229206
8.

Oral transfer of chemical cues, growth proteins and hormones in social insects.

LeBoeuf AC, Waridel P, Brent CS, Gonçalves AN, Menin L, Ortiz D, Riba-Grognuz O, Koto A, Soares ZG, Privman E, Miska EA, Benton R, Keller L.

Elife. 2016 Nov 29;5. pii: e20375. doi: 10.7554/eLife.20375. Erratum in: Elife. 2019 Aug 19;8:.

9.

RNA Sequencing-Based Genome Reannotation of the Dermatophyte Arthroderma benhamiae and Characterization of Its Secretome and Whole Gene Expression Profile during Infection.

Tran VD, De Coi N, Feuermann M, Schmid-Siegert E, Băguţ ET, Mignon B, Waridel P, Peter C, Pradervand S, Pagni M, Monod M.

mSystems. 2016 Aug 2;1(4). pii: e00036-16. eCollection 2016 Jul-Aug.

10.

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.

Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Dulić V, Naef F, Gachon F.

Cell Metab. 2017 Jan 10;25(1):102-117. doi: 10.1016/j.cmet.2016.10.003. Epub 2016 Nov 3.

11.

Proteome-Wide Effect of 17-β-Estradiol and Lipoxin A4 in an Endometriotic Epithelial Cell Line.

Sobel JA, Waridel P, Gori I, Quadroni M, Canny GO.

Front Endocrinol (Lausanne). 2016 Jan 6;6:192. doi: 10.3389/fendo.2015.00192. eCollection 2015.

12.

Multigenerational effects of the anticancer drug tamoxifen and its metabolite 4-hydroxy-tamoxifen on Daphnia pulex.

Borgatta M, Waridel P, Decosterd LA, Buclin T, Chèvre N.

Sci Total Environ. 2016 Mar 1;545-546:21-9. doi: 10.1016/j.scitotenv.2015.11.155. Epub 2015 Dec 30.

PMID:
26745289
13.

Distinct OGT-Binding Sites Promote HCF-1 Cleavage.

Bhuiyan T, Waridel P, Kapuria V, Zoete V, Herr W.

PLoS One. 2015 Aug 25;10(8):e0136636. doi: 10.1371/journal.pone.0136636. eCollection 2015.

14.

The anticancer drug metabolites endoxifen and 4-hydroxy-tamoxifen induce toxic effects on Daphnia pulex in a two-generation study.

Borgatta M, Decosterd LA, Waridel P, Buclin T, Chèvre N.

Sci Total Environ. 2015 Jul 1;520:232-40. doi: 10.1016/j.scitotenv.2015.03.040. Epub 2015 Mar 25.

PMID:
25817760
15.

The Pseudomonas aeruginosa antimetabolite L -2-amino-4-methoxy-trans-3-butenoic acid (AMB) is made from glutamate and two alanine residues via a thiotemplate-linked tripeptide precursor.

Rojas Murcia N, Lee X, Waridel P, Maspoli A, Imker HJ, Chai T, Walsh CT, Reimmann C.

Front Microbiol. 2015 Mar 12;6:170. doi: 10.3389/fmicb.2015.00170. eCollection 2015.

16.

Hsp90 inhibition induces both protein-specific and global changes in the ubiquitinome.

Quadroni M, Potts A, Waridel P.

J Proteomics. 2015 Apr 29;120:215-29. doi: 10.1016/j.jprot.2015.02.020. Epub 2015 Mar 14.

PMID:
25782750
17.

Shotgun ecotoxicoproteomics of Daphnia pulex: biochemical effects of the anticancer drug tamoxifen.

Borgatta M, Hernandez C, Decosterd LA, Chèvre N, Waridel P.

J Proteome Res. 2015 Jan 2;14(1):279-91. doi: 10.1021/pr500916m. Epub 2014 Nov 13.

PMID:
25350372
18.

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.

Mauvoisin D, Wang J, Jouffe C, Martin E, Atger F, Waridel P, Quadroni M, Gachon F, Naef F.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):167-72. doi: 10.1073/pnas.1314066111. Epub 2013 Dec 16.

19.

A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor.

Fierro-Monti I, Racle J, Hernandez C, Waridel P, Hatzimanikatis V, Quadroni M.

PLoS One. 2013 Nov 27;8(11):e80423. doi: 10.1371/journal.pone.0080423. eCollection 2013.

20.

Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes.

Hernandez C, Waridel P, Quadroni M.

Curr Top Med Chem. 2014;14(3):425-34. Review.

PMID:
24304320
21.

Proteomic and transcriptomic profiling of Staphylococcus aureus surface LPXTG-proteins: correlation with agr genotypes and adherence phenotypes.

Ythier M, Resch G, Waridel P, Panchaud A, Gfeller A, Majcherczyk P, Quadroni M, Moreillon P.

Mol Cell Proteomics. 2012 Nov;11(11):1123-39. doi: 10.1074/mcp.M111.014191. Epub 2012 Jul 25.

22.

UV radiation induces genome-mediated, site-specific cleavage in viral proteins.

Wigginton KR, Menin L, Sigstam T, Gannon G, Cascella M, Hamidane HB, Tsybin YO, Waridel P, Kohn T.

Chembiochem. 2012 Apr 16;13(6):837-45. doi: 10.1002/cbic.201100601. Epub 2012 Mar 13.

PMID:
22416020
23.

Evidence for a new post-translational modification in Staphylococcus aureus: hydroxymethylation of asparagine and glutamine.

Waridel P, Ythier M, Gfeller A, Moreillon P, Quadroni M.

J Proteomics. 2012 Mar 16;75(6):1742-51. doi: 10.1016/j.jprot.2011.12.014. Epub 2011 Dec 20.

PMID:
22207155
24.

Identification of novel secreted proteases during extracellular proteolysis by dermatophytes at acidic pH.

Sriranganadane D, Waridel P, Salamin K, Feuermann M, Mignon B, Staib P, Neuhaus JM, Quadroni M, Monod M.

Proteomics. 2011 Nov;11(22):4422-33. doi: 10.1002/pmic.201100234. Epub 2011 Oct 17.

PMID:
21919205
25.

Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma.

Valsesia A, Rimoldi D, Martinet D, Ibberson M, Benaglio P, Quadroni M, Waridel P, Gaillard M, Pidoux M, Rapin B, Rivolta C, Xenarios I, Simpson AJ, Antonarakis SE, Beckmann JS, Jongeneel CV, Iseli C, Stevenson BJ.

PLoS One. 2011 Apr 8;6(4):e18369. doi: 10.1371/journal.pone.0018369.

26.

Secreted glutamic protease rescues aspartic protease Pep deficiency in Aspergillus fumigatus during growth in acidic protein medium.

Sriranganadane D, Reichard U, Salamin K, Fratti M, Jousson O, Waridel P, Quadroni M, Neuhaus JM, Monod M.

Microbiology. 2011 May;157(Pt 5):1541-50. doi: 10.1099/mic.0.048603-0. Epub 2011 Feb 24.

PMID:
21349972
27.

O-GlcNAc transferase catalyzes site-specific proteolysis of HCF-1.

Capotosti F, Guernier S, Lammers F, Waridel P, Cai Y, Jin J, Conaway JW, Conaway RC, Herr W.

Cell. 2011 Feb 4;144(3):376-88. doi: 10.1016/j.cell.2010.12.030.

28.

Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.

Tran BQ, Hernandez C, Waridel P, Potts A, Barblan J, Lisacek F, Quadroni M.

J Proteome Res. 2011 Feb 4;10(2):800-11. doi: 10.1021/pr100951t. Epub 2010 Dec 20.

PMID:
21166477
29.

Aspergillus protein degradation pathways with different secreted protease sets at neutral and acidic pH.

Sriranganadane D, Waridel P, Salamin K, Reichard U, Grouzmann E, Neuhaus JM, Quadroni M, Monod M.

J Proteome Res. 2010 Jul 2;9(7):3511-9. doi: 10.1021/pr901202z.

PMID:
20486678
30.

Xenopus meiotic microtubule-associated interactome.

Gache V, Waridel P, Winter C, Juhem A, Schroeder M, Shevchenko A, Popov AV.

PLoS One. 2010 Feb 17;5(2):e9248. doi: 10.1371/journal.pone.0009248.

31.

Glycation isotopic labeling with 13C-reducing sugars for quantitative analysis of glycated proteins in human plasma.

Priego-Capote F, Scherl A, Müller M, Waridel P, Lisacek F, Sanchez JC.

Mol Cell Proteomics. 2010 Mar;9(3):579-92. doi: 10.1074/mcp.M900439-MCP200. Epub 2009 Nov 6.

32.

Accelerated digestion for high-throughput proteomics analysis of whole bacterial proteomes.

Vaezzadeh AR, Deshusses JM, Waridel P, François P, Zimmermann-Ivol CG, Lescuyer P, Schrenzel J, Hochstrasser DF.

J Microbiol Methods. 2010 Jan;80(1):56-62. doi: 10.1016/j.mimet.2009.10.019. Epub 2009 Nov 12.

PMID:
19913576
33.

Metabolic labeling and protein linearization technology allow the study of proteins secreted by cultured cells in serum-containing media.

Colzani M, Waridel P, Laurent J, Faes E, Rüegg C, Quadroni M.

J Proteome Res. 2009 Oct;8(10):4779-88. doi: 10.1021/pr900476b.

PMID:
19711906
34.

Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification.

Junqueira M, Spirin V, Santana Balbuena T, Waridel P, Surendranath V, Kryukov G, Adzhubei I, Thomas H, Sunyaev S, Shevchenko A.

J Proteome Res. 2008 Aug;7(8):3382-95. doi: 10.1021/pr800140v. Epub 2008 Jun 18.

35.

Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS).

Colzani M, Schütz F, Potts A, Waridel P, Quadroni M.

Mol Cell Proteomics. 2008 May;7(5):927-37. doi: 10.1074/mcp.M700440-MCP200. Epub 2007 Dec 28.

36.

Purification and mass spectrometry identification of microtubule-binding proteins from Xenopus egg extracts.

Gache V, Waridel P, Luche S, Shevchenko A, Popov AV.

Methods Mol Med. 2007;137:29-43.

37.

Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.

Waridel P, Frank A, Thomas H, Surendranath V, Sunyaev S, Pevzner P, Shevchenko A.

Proteomics. 2007 Jul;7(14):2318-29.

PMID:
17623296
38.

Comprehensive analysis of proteins secreted by Trichophyton rubrum and Trichophyton violaceum under in vitro conditions.

Giddey K, Monod M, Barblan J, Potts A, Waridel P, Zaugg C, Quadroni M.

J Proteome Res. 2007 Aug;6(8):3081-92. Epub 2007 Jul 10.

PMID:
17622167
39.
40.

Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.

Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A.

J Proteome Res. 2006 Sep;5(9):2448-56.

PMID:
16944958
41.

Sequence similarity-based proteomics in insects: characterization of the larvae venom of the Brazilian moth Cerodirphia speciosa.

Shevchenko A, de Sousa MM, Waridel P, Bittencourt ST, de Sousa MV, Shevchenko A.

J Proteome Res. 2005 May-Jun;4(3):862-9.

PMID:
15952733
42.
43.
44.

ent-Labdane diterpenes from the aquatic plant Potamogeton pectinatus.

Waridel P, Wolfender JL, Lachavanne JB, Hostettmann K.

Phytochemistry. 2003 Dec;64(7):1309-17.

PMID:
14599530
45.

Evaluation of quadrupole time-of-flight tandem mass spectrometry and ion-trap multiple-stage mass spectrometry for the differentiation of C-glycosidic flavonoid isomers.

Waridel P, Wolfender JL, Ndjoko K, Hobby KR, Major HJ, Hostettmann K.

J Chromatogr A. 2001 Aug 10;926(1):29-41.

PMID:
11554416
46.

Latency of cathepsin B secreted by human colon carcinoma cells is not linked to secretion of cystatin C and is relieved by neutrophil elastase.

Keppler D, Waridel P, Abrahamson M, Bachmann D, Berdoz J, Sordat B.

Biochim Biophys Acta. 1994 May 25;1226(2):117-25.

PMID:
8204657
47.

Neutrophil functions during hemodialysis.

Markert M, Waridel PA, Heierli C, Wauters JP.

Contrib Nephrol. 1988;62:99-108. No abstract available.

PMID:
3359783

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