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Items: 1 to 50 of 257

1.

Quantitative In vivo MRI Assessment of Structural Asymmetries and Sexual Dimorphism of Transient Fetal Compartments in the Human Brain.

Vasung L, Rollins CK, Yun HJ, Velasco-Annis C, Zhang J, Wagstyl K, Evans A, Warfield SK, Feldman HA, Grant PE, Gholipour A.

Cereb Cortex. 2019 Oct 11. pii: bhz200. doi: 10.1093/cercor/bhz200. [Epub ahead of print]

PMID:
31602456
2.

Fetal Echoplanar Imaging: Promises and Challenges.

Afacan O, Estroff JA, Yang E, Barnewolt CE, Connolly SA, Parad RB, Mulkern RV, Warfield SK, Gholipour A.

Top Magn Reson Imaging. 2019 Oct;28(5):245-254. doi: 10.1097/RMR.0000000000000219.

PMID:
31592991
3.

Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia.

Taquet M, Jankovski A, Rensonnet G, Jacobs D, des Rieux A, Macq B, Warfield SK, Scherrer B.

Sci Rep. 2019 Sep 25;9(1):13874. doi: 10.1038/s41598-019-50432-5.

4.

Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection.

Hashemi SR, Salehi SSM, Erdogmus D, Prabhu SP, Warfield SK, Gholipour A.

IEEE Access. 2019;7:721-1735. doi: 10.1109/ACCESS.2018.2886371. Epub 2018 Dec 12.

PMID:
31528523
5.

Rapid measurement and correction of spatiotemporal B0 field changes using FID navigators and a multi-channel reference image.

Wallace TE, Afacan O, Kober T, Warfield SK.

Magn Reson Med. 2019 Aug 29. doi: 10.1002/mrm.27957. [Epub ahead of print]

PMID:
31463976
6.

Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study.

Prohl AK, Scherrer B, Tomas-Fernandez X, Filip-Dhima R, Kapur K, Velasco-Annis C, Clancy S, Carmody E, Dean M, Valle M, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK.

Front Integr Neurosci. 2019 Jul 17;13:24. doi: 10.3389/fnint.2019.00024. eCollection 2019.

7.

Biomechanical modeling and computer simulation of the brain during neurosurgery.

Miller K, Joldes GR, Bourantas G, Warfield SK, Hyde DE, Kikinis R, Wittek A.

Int J Numer Method Biomed Eng. 2019 Oct;35(10):e3250. doi: 10.1002/cnm.3250. Epub 2019 Sep 5. Review.

PMID:
31400252
8.

Retrospective correction of head motion using measurements from an electromagnetic tracker.

Afacan O, Wallace TE, Warfield SK.

Magn Reson Med. 2019 Aug 10. doi: 10.1002/mrm.27934. [Epub ahead of print]

PMID:
31400036
9.

White matter mean diffusivity correlates with myelination in tuberous sclerosis complex.

Peters JM, Struyven RR, Prohl AK, Vasung L, Stajduhar A, Taquet M, Bushman JJ, Lidov H, Singh JM, Scherrer B, Madsen JR, Prabhu SP, Sahin M, Afacan O, Warfield SK.

Ann Clin Transl Neurol. 2019 Jul;6(7):1178-1190. doi: 10.1002/acn3.793. Epub 2019 Jun 23.

10.

Resting-State fMRI Networks in Children with Tuberous Sclerosis Complex.

Ahtam B, Dehaes M, Sliva DD, Peters JM, Krueger DA, Bebin EM, Northrup H, Wu JY, Warfield SK, Sahin M, Grant PE; TACERN Study Group.

J Neuroimaging. 2019 Jul 14. doi: 10.1111/jon.12653. [Epub ahead of print]

PMID:
31304656
11.

Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex.

Peters JM, Hyde DE, Chu CJ, Boom M, Scherrer B, Madsen JR, Stone SS, Ouaalam H, Prabhu SP, Sahin M, Warfield SK.

J Clin Neurophysiol. 2019 Jun 28. doi: 10.1097/WNP.0000000000000615. [Epub ahead of print]

PMID:
31261349
12.

Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation.

Joldes G, Bourantas G, Zwick B, Chowdhury H, Wittek A, Agrawal S, Mountris K, Hyde D, Warfield SK, Miller K.

Med Image Anal. 2019 Aug;56:152-171. doi: 10.1016/j.media.2019.06.004. Epub 2019 Jun 12.

PMID:
31229760
13.

Perioperatively Inhaled Hydrogen Gas Diminishes Neurologic Injury Following Experimental Circulatory Arrest in Swine.

Cole AR, Perry DA, Raza A, Nedder AP, Pollack E, Regan WL, van den Bosch SJ, Polizzotti BD, Yang E, Davila D, Afacan O, Warfield SK, Ou Y, Sefton B, Everett AD, Neil JJ, Lidov HGW, Mayer JE, Kheir JN.

JACC Basic Transl Sci. 2019 Mar 27;4(2):176-187. doi: 10.1016/j.jacbts.2018.11.006. eCollection 2019 Apr.

14.

Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning.

Sourati J, Gholipour A, Dy JG, Tomas-Fernandez X, Kurugol S, Warfield SK.

IEEE Trans Med Imaging. 2019 Mar 27. doi: 10.1109/TMI.2019.2907805. [Epub ahead of print]

PMID:
30932833
15.

A registration method for improving quantitative assessment in probabilistic diffusion tractography.

Waugh JL, Kuster JK, Makhlouf ML, Levenstein JM, Multhaupt-Buell TJ, Warfield SK, Sharma N, Blood AJ.

Neuroimage. 2019 Apr 1;189:288-306. doi: 10.1016/j.neuroimage.2018.12.057. Epub 2019 Jan 3.

16.

AUTOMATIC RENAL SEGMENTATION IN DCE-MRI USING CONVOLUTIONAL NEURAL NETWORKS.

Haghighi M, Warfield SK, Kurugol S.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1534-1537. doi: 10.1109/ISBI.2018.8363865. Epub 2018 May 24.

17.

Semi-Automated Extraction of Crohns Disease MR Imaging Markers using a 3D Residual CNN with Distance Prior.

Lamash Y, Kurugol S, Warfield SK.

Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep;11045:218-226. doi: 10.1007/978-3-030-00889-5_25. Epub 2018 Sep 20.

18.

Active Deep Learning with Fisher Information for Patch-wise Semantic Segmentation.

Sourati J, Gholipour A, Dy JG, Kurugol S, Warfield SK.

Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep;11045:83-91. doi: 10.1007/978-3-030-00889-5_10. Epub 2018 Sep 20.

19.

Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition.

Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A.

Magn Reson Med. 2019 May;81(5):3314-3329. doi: 10.1002/mrm.27613. Epub 2018 Nov 16.

PMID:
30443929
20.

Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex.

Peters JM, Prohl A, Kapur K, Nath A, Scherrer B, Clancy S, Prabhu SP, Sahin M, Franz DN, Warfield SK, Krueger DA.

Pediatr Neurol. 2019 Jan;90:24-30. doi: 10.1016/j.pediatrneurol.2018.10.005. Epub 2018 Oct 18.

PMID:
30424962
21.

Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome.

Srivastava S, Scherrer B, Prohl AK, Filip-Dhima R, Kapur K, Kolevzon A, Buxbaum JD, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Warfield SK, Sahin M; Developmental Synaptopathies Consortium.

Pediatr Neurol. 2019 Jan;90:37-43. doi: 10.1016/j.pediatrneurol.2018.09.008. Epub 2018 Sep 21.

PMID:
30396833
22.

Curved planar reformatting and convolutional neural network-based segmentation of the small bowel for visualization and quantitative assessment of pediatric Crohn's disease from MRI.

Lamash Y, Kurugol S, Freiman M, Perez-Rossello JM, Callahan MJ, Bousvaros A, Warfield SK.

J Magn Reson Imaging. 2019 Jun;49(6):1565-1576. doi: 10.1002/jmri.26330. Epub 2018 Oct 24.

PMID:
30353957
23.

Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations.

Rensonnet G, Scherrer B, Girard G, Jankovski A, Warfield SK, Macq B, Thiran JP, Taquet M.

Neuroimage. 2019 Jan 1;184:964-980. doi: 10.1016/j.neuroimage.2018.09.076. Epub 2018 Sep 30.

PMID:
30282007
24.

Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease.

Ortinau CM, Rollins CK, Gholipour A, Yun HJ, Marshall M, Gagoski B, Afacan O, Friedman K, Tworetzky W, Warfield SK, Newburger JW, Inder TE, Grant PE, Im K.

Cereb Cortex. 2018 Oct 1. doi: 10.1093/cercor/bhy235. [Epub ahead of print]

PMID:
30272144
25.

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C.

Sci Rep. 2018 Sep 12;8(1):13650. doi: 10.1038/s41598-018-31911-7.

26.

Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images.

Khan S, Vasung L, Marami B, Rollins CK, Afacan O, Ortinau CM, Yang E, Warfield SK, Gholipour A.

Neuroimage. 2019 Jan 15;185:593-608. doi: 10.1016/j.neuroimage.2018.08.030. Epub 2018 Aug 30. Review.

27.

Head motion measurement and correction using FID navigators.

Wallace TE, Afacan O, Waszak M, Kober T, Warfield SK.

Magn Reson Med. 2019 Jan;81(1):258-274. doi: 10.1002/mrm.27381. Epub 2018 Jul 29.

PMID:
30058216
28.

Changes in neonatal regional brain volume associated with preterm birth and perinatal factors.

Alexander B, Kelly CE, Adamson C, Beare R, Zannino D, Chen J, Murray AL, Loh WY, Matthews LG, Warfield SK, Anderson PJ, Doyle LW, Seal ML, Spittle AJ, Cheong JLY, Thompson DK.

Neuroimage. 2019 Jan 15;185:654-663. doi: 10.1016/j.neuroimage.2018.07.021. Epub 2018 Jul 21.

PMID:
30016676
29.

Presurgical language fMRI: Technical practices in epilepsy surgical planning.

Benjamin CFA, Dhingra I, Li AX, Blumenfeld H, Alkawadri R, Bickel S, Helmstaedter C, Meletti S, Bronen RA, Warfield SK, Peters JM, Reutens D, Połczyńska MM, Hirsch LJ, Spencer DD.

Hum Brain Mapp. 2018 Oct;39(10):4032-4042. doi: 10.1002/hbm.24229. Epub 2018 Jul 1.

30.

Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex.

Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK.

Cereb Cortex. 2018 Oct 1;28(10):3665-3672. doi: 10.1093/cercor/bhx247.

31.

Fetal Neuropathology in Zika Virus-Infected Pregnant Female Rhesus Monkeys.

Martinot AJ, Abbink P, Afacan O, Prohl AK, Bronson R, Hecht JL, Borducchi EN, Larocca RA, Peterson RL, Rinaldi W, Ferguson M, Didier PJ, Weiss D, Lewis MG, De La Barrera RA, Yang E, Warfield SK, Barouch DH.

Cell. 2018 May 17;173(5):1111-1122.e10. doi: 10.1016/j.cell.2018.03.019. Epub 2018 Mar 29.

32.

Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex.

Srivastava S, Prohl AK, Scherrer B, Kapur K, Krueger DA, Warfield SK, Sahin M; TACERN Study Group.

Neurology. 2018 Apr 24;90(17):e1493-e1500. doi: 10.1212/WNL.0000000000005352. Epub 2018 Mar 23.

33.

Presurgical language fMRI: Clinical practices and patient outcomes in epilepsy surgical planning.

Benjamin CFA, Li AX, Blumenfeld H, Constable RT, Alkawadri R, Bickel S, Helmstaedter C, Meletti S, Bronen R, Warfield SK, Peters JM, Reutens D, Połczyńska M, Spencer DD, Hirsch LJ.

Hum Brain Mapp. 2018 Jul;39(7):2777-2785. doi: 10.1002/hbm.24039. Epub 2018 Mar 12.

34.

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices.

Kurugol S, Marami B, Afacan O, Warfield SK, Gholipour A.

Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017). 2017;10555:75-85. doi: 10.1007/978-3-319-67564-0_8. Epub 2017 Sep 9.

35.

Differential Rates of Perinatal Maturation of Human Primary and Nonprimary Auditory Cortex.

Monson BB, Eaton-Rosen Z, Kapur K, Liebenthal E, Brownell A, Smyser CD, Rogers CE, Inder TE, Warfield SK, Neil JJ.

eNeuro. 2018 Jan 16;5(1). pii: ENEURO.0380-17.2017. doi: 10.1523/ENEURO.0380-17.2017. eCollection 2018 Jan-Feb.

36.

Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST.

Velasco-Annis C, Akhondi-Asl A, Stamm A, Warfield SK.

J Neuroimaging. 2018 Mar;28(2):162-172. doi: 10.1111/jon.12483. Epub 2017 Nov 14.

PMID:
29134725
37.

Localization of stereo-electroencephalography signals using a finite difference complete electrode model.

Hyde DE, Tomas-Fernandez X, Stone SS, Peters J, Warfield SK.

Conf Proc IEEE Eng Med Biol Soc. 2017 Jul;2017:3600-3603. doi: 10.1109/EMBC.2017.8037636.

PMID:
29060677
38.

Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI.

Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil JJ, Warfield SK.

Neuroimage. 2017 Nov 15;162:65-72. doi: 10.1016/j.neuroimage.2017.08.013. Epub 2017 Aug 8.

39.

Assessing the validity of the approximation of diffusion-weighted-MRI signals from crossing fascicles by sums of signals from single fascicles.

Rensonnet G, Scherrer B, Warfield SK, Macq B, Taquet M.

Magn Reson Med. 2018 Apr;79(4):2332-2345. doi: 10.1002/mrm.26832. Epub 2017 Jul 16.

40.

Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison.

Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, Dougherty RF, Sakaie K, Wheeler-Kingshott C, Warfield SK, Witzel T, Wald LL, Raya JG, Alexander DC.

NMR Biomed. 2017 Sep;30(9). doi: 10.1002/nbm.3734. Epub 2017 Jun 23.

41.

Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation.

Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK.

Med Image Anal. 2017 Jul;39:124-132. doi: 10.1016/j.media.2017.04.006. Epub 2017 May 3.

42.

Evaluation of Numerical Techniques for Solving the Current Injection Problem in Biological Tissues.

Hyde DE, Dannhauer M, Warfield SK, MacLeod R, Brooks DH.

Proc IEEE Int Symp Biomed Imaging. 2016 Apr;2016:876-880. doi: 10.1109/ISBI.2016.7493405. Epub 2016 Jun 16.

43.

Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis.

Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A.

Neuroimage. 2017 Aug 1;156:475-488. doi: 10.1016/j.neuroimage.2017.04.033. Epub 2017 Apr 19.

44.

Automated template-based brain localization and extraction for fetal brain MRI reconstruction.

Tourbier S, Velasco-Annis C, Taimouri V, Hagmann P, Meuli R, Warfield SK, Bach Cuadra M, Gholipour A.

Neuroimage. 2017 Jul 15;155:460-472. doi: 10.1016/j.neuroimage.2017.04.004. Epub 2017 Apr 11.

45.

A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth.

Gholipour A, Rollins CK, Velasco-Annis C, Ouaalam A, Akhondi-Asl A, Afacan O, Ortinau CM, Clancy S, Limperopoulos C, Yang E, Estroff JA, Warfield SK.

Sci Rep. 2017 Mar 28;7(1):476. doi: 10.1038/s41598-017-00525-w.

46.

Heavy Prenatal Alcohol Exposure is Related to Smaller Corpus Callosum in Newborn MRI Scans.

Jacobson SW, Jacobson JL, Molteno CD, Warton CMR, Wintermark P, Hoyme HE, De Jong G, Taylor P, Warton F, Lindinger NM, Carter RC, Dodge NC, Grant E, Warfield SK, Zöllei L, van der Kouwe AJW, Meintjes EM.

Alcohol Clin Exp Res. 2017 May;41(5):965-975. doi: 10.1111/acer.13363. Epub 2017 Apr 3.

47.

Reduced thalamic volume in patients with Electrical Status Epilepticus in Sleep.

Sánchez Fernández I, Peters JM, Akhondi-Asl A, Klehm J, Warfield SK, Loddenkemper T.

Epilepsy Res. 2017 Feb;130:74-80. doi: 10.1016/j.eplepsyres.2017.01.010. Epub 2017 Jan 27.

PMID:
28160673
48.

A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans.

Jia Y, Gholipour A, He Z, Warfield SK.

IEEE Trans Med Imaging. 2017 May;36(5):1182-1193. doi: 10.1109/TMI.2017.2656907. Epub 2017 Jan 23.

49.

Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects.

Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A.

Med Image Comput Comput Assist Interv. 2016 Oct;9902:544-552. doi: 10.1007/978-3-319-46726-9_63. Epub 2016 Oct 2.

50.

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions.

Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C.

IEEE Trans Med Imaging. 2017 May;36(5):1106-1115. doi: 10.1109/TMI.2016.2646920. Epub 2017 Jan 9.

PMID:
28092527

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