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Items: 41

1.

Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters.

Pan SC, Ward DV, Yin Y, Hu Y, Elfawal MA, Clark RE, Aroian RV.

Sci Rep. 2019 May 27;9(1):7868. doi: 10.1038/s41598-019-44301-4.

2.

Alzheimer's Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway.

Haran JP, Bhattarai SK, Foley SE, Dutta P, Ward DV, Bucci V, McCormick BA.

MBio. 2019 May 7;10(3). pii: e00632-19. doi: 10.1128/mBio.00632-19.

3.

Integration of genomic and clinical data augments surveillance of healthcare-acquired infections.

Ward DV, Hoss AG, Kolde R, van Aggelen HC, Loving J, Smith SA, Mack DA, Kathirvel R, Halperin JA, Buell DJ, Wong BE, Ashworth JL, Fortunato-Habib MM, Xu L, Barton BA, Lazar P, Carmona JJ, Mathew J, Salgo IS, Gross BD, Ellison RT.

Infect Control Hosp Epidemiol. 2019 Jun;40(6):649-655. doi: 10.1017/ice.2019.75. Epub 2019 Apr 23.

PMID:
31012399
4.

The influence of payor status on outcomes associated with surgical repair of upper gastrointestinal perforations due to peptic ulcer disease in the United States.

Daniel VT, Ayturk D, Ward DV, McCormick BA, Santry HP.

Am J Surg. 2019 Jan;217(1):121-125. doi: 10.1016/j.amjsurg.2018.06.025. Epub 2018 Jul 2.

PMID:
30017307
5.

Variability of indoor fungal microbiome of green and non-green low-income homes in Cincinnati, Ohio.

Coombs K, Taft D, Ward DV, Green BJ, Chew GL, Shamsaei B, Meller J, Indugula R, Reponen T.

Sci Total Environ. 2018 Jan 1;610-611:212-218. doi: 10.1016/j.scitotenv.2017.07.274. Epub 2017 Aug 10.

PMID:
28803198
6.

Intestinal organoids model human responses to infection by commensal and Shiga toxin producing Escherichia coli.

Karve SS, Pradhan S, Ward DV, Weiss AA.

PLoS One. 2017 Jun 14;12(6):e0178966. doi: 10.1371/journal.pone.0178966. eCollection 2017.

7.

Correction: Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice.

Lowe PP, Gyongyosi B, Satishchandran A, Iracheta-Vellve A, Ambade A, Cho Y, Kodys K, Catalano D, Ward DV, Szabo G.

PLoS One. 2017 May 31;12(5):e0179070. doi: 10.1371/journal.pone.0179070. eCollection 2017.

8.

Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease.

Grander C, Adolph TE, Wieser V, Lowe P, Wrzosek L, Gyongyosi B, Ward DV, Grabherr F, Gerner RR, Pfister A, Enrich B, Ciocan D, Macheiner S, Mayr L, Drach M, Moser P, Moschen AR, Perlemuter G, Szabo G, Cassard AM, Tilg H.

Gut. 2018 May;67(5):891-901. doi: 10.1136/gutjnl-2016-313432. Epub 2017 May 26.

PMID:
28550049
9.

Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice.

Lowe PP, Gyongyosi B, Satishchandran A, Iracheta-Vellve A, Ambade A, Kodys K, Catalano D, Ward DV, Szabo G.

PLoS One. 2017 Mar 28;12(3):e0174544. doi: 10.1371/journal.pone.0174544. eCollection 2017. Erratum in: PLoS One. 2017 May 31;12 (5):e0179070.

10.

Strain-level microbial epidemiology and population genomics from shotgun metagenomics.

Scholz M, Ward DV, Pasolli E, Tolio T, Zolfo M, Asnicar F, Truong DT, Tett A, Morrow AL, Segata N.

Nat Methods. 2016 May;13(5):435-8. doi: 10.1038/nmeth.3802. Epub 2016 Mar 21.

PMID:
26999001
11.

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants.

Ward DV, Scholz M, Zolfo M, Taft DH, Schibler KR, Tett A, Segata N, Morrow AL.

Cell Rep. 2016 Mar 29;14(12):2912-24. doi: 10.1016/j.celrep.2016.03.015. Epub 2016 Mar 17.

12.

Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota.

Lugli GA, Milani C, Turroni F, Tremblay D, Ferrario C, Mancabelli L, Duranti S, Ward DV, Ossiprandi MC, Moineau S, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Jul;18(7):2196-213. doi: 10.1111/1462-2920.13154. Epub 2016 Jan 18.

PMID:
26627180
13.

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.

Milani C, Lugli GA, Duranti S, Turroni F, Mancabelli L, Ferrario C, Mangifesta M, Hevia A, Viappiani A, Scholz M, Arioli S, Sanchez B, Lane J, Ward DV, Hickey R, Mora D, Segata N, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2015 Oct 28;5:15782. doi: 10.1038/srep15782.

14.

Center Variation in Intestinal Microbiota Prior to Late-Onset Sepsis in Preterm Infants.

Taft DH, Ambalavanan N, Schibler KR, Yu Z, Newburg DS, Deshmukh H, Ward DV, Morrow AL.

PLoS One. 2015 Jun 25;10(6):e0130604. doi: 10.1371/journal.pone.0130604. eCollection 2015.

15.

16S community profiling identifies proton pump inhibitor related differences in gastric, lung, and oropharyngeal microflora.

Rosen R, Hu L, Amirault J, Khatwa U, Ward DV, Onderdonk A.

J Pediatr. 2015 Apr;166(4):917-23. doi: 10.1016/j.jpeds.2014.12.067. Epub 2015 Feb 4.

16.

Intestinal microbiota of preterm infants differ over time and between hospitals.

Taft DH, Ambalavanan N, Schibler KR, Yu Z, Newburg DS, Ward DV, Morrow AL.

Microbiome. 2014 Oct 1;2:36. doi: 10.1186/2049-2618-2-36. eCollection 2014.

17.

Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques.

Shen Z, Sheh A, Young SK, Abouelliel A, Ward DV, Earl AM, Fox JG.

Genome Announc. 2014 Sep 11;2(5). pii: e00857-14. doi: 10.1128/genomeA.00857-14.

18.

16S rRNA gene survey of microbial communities in Winogradsky columns.

Rundell EA, Banta LM, Ward DV, Watts CD, Birren B, Esteban DJ.

PLoS One. 2014 Aug 7;9(8):e104134. doi: 10.1371/journal.pone.0104134. eCollection 2014.

19.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

20.

Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice.

Wannemuehler MJ, Overstreet AM, Ward DV, Phillips GJ.

Genome Announc. 2014 Apr 10;2(2). pii: e00287-14. doi: 10.1128/genomeA.00287-14.

21.

Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter.

Greenwood C, Morrow AL, Lagomarcino AJ, Altaye M, Taft DH, Yu Z, Newburg DS, Ward DV, Schibler KR.

J Pediatr. 2014 Jul;165(1):23-9. doi: 10.1016/j.jpeds.2014.01.010. Epub 2014 Feb 13.

22.

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants.

Morrow AL, Lagomarcino AJ, Schibler KR, Taft DH, Yu Z, Wang B, Altaye M, Wagner M, Gevers D, Ward DV, Kennedy MA, Huttenhower C, Newburg DS.

Microbiome. 2013 Apr 16;1(1):13. doi: 10.1186/2049-2618-1-13.

23.

Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence.

Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D.

J Bacteriol. 2014 Mar;196(5):920-30. doi: 10.1128/JB.01091-13. Epub 2013 Dec 13.

24.

The success of acinetobacter species; genetic, metabolic and virulence attributes.

Peleg AY, de Breij A, Adams MD, Cerqueira GM, Mocali S, Galardini M, Nibbering PH, Earl AM, Ward DV, Paterson DL, Seifert H, Dijkshoorn L.

PLoS One. 2012;7(10):e46984. doi: 10.1371/journal.pone.0046984. Epub 2012 Oct 29.

25.

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.

Genome Biol. 2012 Apr 16;13(9):R79. doi: 10.1186/gb-2012-13-9-r79.

26.

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ.

PLoS One. 2012;7(6):e39242. doi: 10.1371/journal.pone.0039242. Epub 2012 Jun 29.

27.

Serine/threonine phosphatase Stp1 contributes to reduced susceptibility to vancomycin and virulence in Staphylococcus aureus.

Cameron DR, Ward DV, Kostoulias X, Howden BP, Moellering RC Jr, Eliopoulos GM, Peleg AY.

J Infect Dis. 2012 Jun;205(11):1677-87. doi: 10.1093/infdis/jis252. Epub 2012 Apr 5.

28.

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.

Giannoukos G, Ciulla DM, Huang K, Haas BJ, Izard J, Levin JZ, Livny J, Earl AM, Gevers D, Ward DV, Nusbaum C, Birren BW, Gnirke A.

Genome Biol. 2012;13(3):R23. doi: 10.1186/gb-2012-13-3-r23.

29.

Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus.

Peleg AY, Miyakis S, Ward DV, Earl AM, Rubio A, Cameron DR, Pillai S, Moellering RC Jr, Eliopoulos GM.

PLoS One. 2012;7(1):e28316. doi: 10.1371/journal.pone.0028316. Epub 2012 Jan 6.

30.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

31.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

32.

Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis.

Zella GC, Hait EJ, Glavan T, Gevers D, Ward DV, Kitts CL, Korzenik JR.

Inflamm Bowel Dis. 2011 May;17(5):1092-100. doi: 10.1002/ibd.21460. Epub 2010 Sep 15.

PMID:
20845425
33.

A catalog of reference genomes from the human microbiome.

Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D.

Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605.

34.

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung.

Gawronski JD, Wong SM, Giannoukos G, Ward DV, Akerley BJ.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16422-7. doi: 10.1073/pnas.0906627106. Epub 2009 Sep 4.

35.

Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies.

Ward DV, Draper O, Zupan JR, Zambryski PC.

Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11493-500. Epub 2002 Aug 12.

36.

Agrobacterium VirE2 gets the VIP1 treatment in plant nuclear import.

Ward DV, Zupan JR, Zambryski PC.

Trends Plant Sci. 2002 Jan;7(1):1-3. No abstract available.

PMID:
11804814
37.

The six functions of Agrobacterium VirE2.

Ward DV, Zambryski PC.

Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):385-6. No abstract available.

38.
39.

Regeneration of soybean (Glycine max L. Merr.) from cultured primary leaf tissue.

Wright MS, Ward DV, Hinchee MA, Carnes MG, Kaufman RJ.

Plant Cell Rep. 1987 Apr;6(2):83-9. doi: 10.1007/BF00276659.

PMID:
24248483
40.

Where have all the patients gone?

Ward DV.

Nurs Times. 1980 Aug 28;76(35):1536-7. No abstract available.

PMID:
6902272
41.

The effects of abate, an organophosphorous insecticide, on marsh fiddler crab populations.

Ward DV, Howes BL.

Bull Environ Contam Toxicol. 1974 Dec;12(6):694-7. No abstract available.

PMID:
4141912

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