Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 36

1.

The genome of cowpea (Vigna unguiculata [L.] Walp.).

Lonardi S, Muñoz-Amatriaín M, Liang Q, Shu S, Wanamaker SI, Lo S, Tanskanen J, Schulman AH, Zhu T, Luo MC, Alhakami H, Ounit R, Hasan AM, Verdier J, Roberts PA, Santos JRP, Ndeve A, Doležel J, Vrána J, Hokin SA, Farmer AD, Cannon SB, Close TJ.

Plant J. 2019 Jun;98(5):767-782. doi: 10.1111/tpj.14349.

2.

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps.

Pan W, Wanamaker SI, Ah-Fong AMV, Judelson HS, Lonardi S.

Bioinformatics. 2018 Jul 1;34(13):i43-i51. doi: 10.1093/bioinformatics/bty255.

3.

A multi-parent advanced generation inter-cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.).

Huynh BL, Ehlers JD, Huang BE, Muñoz-Amatriaín M, Lonardi S, Santos JRP, Ndeve A, Batieno BJ, Boukar O, Cisse N, Drabo I, Fatokun C, Kusi F, Agyare RY, Guo YN, Herniter I, Lo S, Wanamaker SI, Xu S, Close TJ, Roberts PA.

Plant J. 2018 Mar;93(6):1129-1142. doi: 10.1111/tpj.13827. Epub 2018 Feb 24.

4.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

5.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

6.

Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.

7.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

8.

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.

Lonardi S, Mirebrahim H, Wanamaker S, Alpert M, Ciardo G, Duma D, Close TJ.

Bioinformatics. 2015 Sep 15;31(18):2972-80. doi: 10.1093/bioinformatics/btv311. Epub 2015 May 20.

PMID:
25995232
9.

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

Ounit R, Wanamaker S, Close TJ, Lonardi S.

BMC Genomics. 2015 Mar 25;16:236. doi: 10.1186/s12864-015-1419-2.

10.

Genetic mapping and legume synteny of aphid resistance in African cowpea (Vigna unguiculata L. Walp.) grown in California.

Huynh BL, Ehlers JD, Ndeve A, Wanamaker S, Lucas MR, Close TJ, Roberts PA.

Mol Breed. 2015;35:36. Epub 2015 Jan 21.

11.

Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp].

Pottorff M, Roberts PA, Close TJ, Lonardi S, Wanamaker S, Ehlers JD.

BMC Genomics. 2014 May 1;15:328. doi: 10.1186/1471-2164-15-328.

12.

Combinatorial pooling enables selective sequencing of the barley gene space.

Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ.

PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4.

13.

Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum race 3 in cowpea [Vigna unguiculata (L.) Walp].

Pottorff M, Wanamaker S, Ma YQ, Ehlers JD, Roberts PA, Close TJ.

PLoS One. 2012;7(7):e41600. doi: 10.1371/journal.pone.0041600. Epub 2012 Jul 31.

14.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.

Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, Cheng J, Correll M, Duarte M, Fan C, Feltkamp MC, Ficarro SB, Franchi R, Garg BK, Gulbahce N, Hao T, Holthaus AM, James R, Korkhin A, Litovchick L, Mar JC, Pak TR, Rabello S, Rubio R, Shen Y, Singh S, Spangle JM, Tasan M, Wanamaker S, Webber JT, Roecklein-Canfield J, Johannsen E, Barabási AL, Beroukhim R, Kieff E, Cusick ME, Hill DE, Münger K, Marto JA, Quackenbush J, Roth FP, DeCaprio JA, Vidal M.

Nature. 2012 Jul 26;487(7408):491-5. doi: 10.1038/nature11288.

15.

ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction.

Hu Z, Ehlers JD, Roberts PA, Close TJ, Lucas MR, Wanamaker S, Xu S.

BMC Genet. 2012 Feb 23;13:9. doi: 10.1186/1471-2156-13-9.

16.

Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava.

Ferguson ME, Hearne SJ, Close TJ, Wanamaker S, Moskal WA, Town CD, de Young J, Marri PR, Rabbi IY, de Villiers EP.

Theor Appl Genet. 2012 Mar;124(4):685-95. doi: 10.1007/s00122-011-1739-9. Epub 2011 Nov 9.

PMID:
22069119
17.

Development and implementation of high-throughput SNP genotyping in barley.

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R.

BMC Genomics. 2009 Dec 4;10:582. doi: 10.1186/1471-2164-10-582.

18.

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs.

Muchero W, Diop NN, Bhat PR, Fenton RD, Wanamaker S, Pottorff M, Hearne S, Cisse N, Fatokun C, Ehlers JD, Roberts PA, Close TJ.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18159-64. doi: 10.1073/pnas.0905886106. Epub 2009 Oct 13.

19.

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.

Kim SH, Bhat PR, Cui X, Walia H, Xu J, Wanamaker S, Ismail AM, Wilson C, Close TJ.

BMC Plant Biol. 2009 May 29;9:65. doi: 10.1186/1471-2229-9-65.

20.

Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of barley (Hordeum vulgare L.).

Tommasini L, Svensson JT, Rodriguez EM, Wahid A, Malatrasi M, Kato K, Wanamaker S, Resnik J, Close TJ.

Funct Integr Genomics. 2008 Nov;8(4):387-405. doi: 10.1007/s10142-008-0081-z. Epub 2008 May 30.

PMID:
18512091
21.

Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array.

Das S, Bhat PR, Sudhakar C, Ehlers JD, Wanamaker S, Roberts PA, Cui X, Close TJ.

BMC Genomics. 2008 Feb 28;9:107. doi: 10.1186/1471-2164-9-107.

22.

HarvEST.

Close TJ, Wanamaker S, Roose ML, Lyon M.

Methods Mol Biol. 2007;406:161-77. No abstract available.

PMID:
18287692
23.

Mapping translocation breakpoints using a wheat microarray.

Bhat PR, Lukaszewski A, Cui X, Xu J, Svensson JT, Wanamaker S, Waines JG, Close TJ.

Nucleic Acids Res. 2007;35(9):2936-43. Epub 2007 Apr 16.

24.

Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.

Rostoks N, Mudie S, Cardle L, Russell J, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM, Hedley PE, Liu H, Morris J, Close TJ, Marshall DF, Waugh R.

Mol Genet Genomics. 2005 Dec;274(5):515-27. Epub 2005 Oct 22.

PMID:
16244872
25.

Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage.

Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Zeng L, Wanamaker SI, Mandal J, Xu J, Cui X, Close TJ.

Plant Physiol. 2005 Oct;139(2):822-35. Epub 2005 Sep 23.

26.

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.

Cui X, Xu J, Asghar R, Condamine P, Svensson JT, Wanamaker S, Stein N, Roose M, Close TJ.

Bioinformatics. 2005 Oct 15;21(20):3852-8. Epub 2005 Aug 23.

PMID:
16118260
27.

Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.).

Zhang D, Choi DW, Wanamaker S, Fenton RD, Chin A, Malatrasi M, Turuspekov Y, Walia H, Akhunov ED, Kianian P, Otto C, Simons K, Deal KR, Echenique V, Stamova B, Ross K, Butler GE, Strader L, Verhey SD, Johnson R, Altenbach S, Kothari K, Tanaka C, Shah MM, Laudencia-Chingcuanco D, Han P, Miller RE, Crossman CC, Chao S, Lazo GR, Klueva N, Gustafson JP, Kianian SF, Dubcovsky J, Walker-Simmons MK, Gill KS, Dvorák J, Anderson OD, Sorrells ME, McGuire PE, Qualset CO, Nguyen HT, Close TJ.

Genetics. 2004 Oct;168(2):595-608.

28.

A new resource for cereal genomics: 22K barley GeneChip comes of age.

Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP.

Plant Physiol. 2004 Mar;134(3):960-8.

29.

Ultrasound evaluation of blunt abdominal trauma: program implementation, initial experience, and learning curve.

Thomas B, Falcone RE, Vasquez D, Santanello S, Townsend M, Hockenberry S, Innes J, Wanamaker S.

J Trauma. 1997 Mar;42(3):384-8; discussion 388-90.

PMID:
9095104
30.

Laparoscopic vs. open wedge biopsy of the liver.

Falcone RE, Wanamaker SR, Barnes F, Baxter CG, Santanello SA.

J Laparoendosc Surg. 1993 Aug;3(4):325-9.

PMID:
8268501
31.

Colorectal trauma: primary repair or anastomosis with intracolonic bypass vs. ostomy.

Falcone RE, Wanamaker SR, Santanello SA, Carey LC.

Dis Colon Rectum. 1992 Oct;35(10):957-63.

PMID:
1395983
32.

Physician review improves hospital DRG reimbursement in injury.

Falcone RE, Wanamaker SR, Monk J, Carey LC, Valenziano C.

J Trauma. 1992 Sep;33(3):370-3; discussion 373-4.

PMID:
1404504
33.

Preoperative serum creatinine as a predictor of survival in perforated gastroduodenal ulcer.

Ferrara JJ, Wanamaker S, Carey LC.

Am Surg. 1985 Oct;51(10):551-5.

PMID:
4051330
34.

Use of the EEA stapling instrument for control of bleeding esophageal varices.

Wanamaker SR, Cooperman M, Carey LC.

Surgery. 1983 Oct;94(4):620-6.

PMID:
6604952
35.

Synthesis of beta-L-fucopyranosyl phosphate and L-fucofuranosyl phosphates by the MacDonald procedure.

Prihar HS, Tsai JH, Wanamaker SR, Duber SJ, Behrman EJ.

Carbohydr Res. 1977 Jul;56(2):315-24.

PMID:
902265
36.

Thrombocytopenia associated with long-term levodopa therapy.

Wanamaker WM, Wanamaker SJ, Celesia GG, Koeller AA.

JAMA. 1976 May 17;235(20):2217-9.

PMID:
946847

Supplemental Content

Loading ...
Support Center